Wall clock time and date at job start Tue Mar 31 2020 06:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47244 * 2 1 4 4 N 1.46901 * 109.46661 * 179.97438 * 3 2 1 5 5 C 1.46906 * 110.99681 * 169.99903 * 4 3 2 6 6 C 1.53242 * 109.33730 * 187.25246 * 5 4 3 7 7 N 1.47080 * 108.52053 * 306.16696 * 6 5 4 8 8 C 1.34777 * 120.88393 * 231.18783 * 7 6 5 9 9 O 1.21288 * 119.99593 * 0.02562 * 8 7 6 10 10 C 1.50697 * 120.00369 * 180.02562 * 8 7 6 11 11 C 1.52997 * 109.47466 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47291 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47116 * 59.99479 * 18 16 14 20 20 H 1.48490 * 109.47381 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46756 * 300.00079 * 18 16 14 22 22 C 1.47083 * 118.23602 * 51.46453 * 7 6 5 23 23 C 1.46898 * 111.00098 * 294.29727 * 4 3 2 24 24 H 1.09003 * 109.46909 * 59.99673 * 1 2 3 25 25 H 1.08996 * 109.47297 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46994 * 300.00402 * 1 2 3 27 27 H 1.08998 * 109.46994 * 239.99598 * 2 1 3 28 28 H 1.09000 * 109.46761 * 119.99818 * 2 1 3 29 29 H 1.08998 * 109.47453 * 59.99879 * 3 2 1 30 30 H 1.09000 * 109.47093 * 299.99614 * 3 2 1 31 31 H 1.08998 * 109.49162 * 67.29455 * 5 4 3 32 32 H 1.08993 * 109.51615 * 307.22651 * 5 4 3 33 33 H 1.09000 * 109.62497 * 186.46160 * 6 5 4 34 34 H 1.08993 * 109.62991 * 65.88399 * 6 5 4 35 35 H 1.09002 * 109.47120 * 59.99760 * 10 8 7 36 36 H 1.08998 * 109.46862 * 300.00562 * 10 8 7 37 37 H 1.09002 * 109.47153 * 59.99773 * 11 10 8 38 38 H 1.09001 * 109.46832 * 299.99964 * 11 10 8 39 39 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 40 40 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 41 41 H 1.09001 * 109.47109 * 299.99380 * 13 12 11 42 42 H 1.09002 * 109.47508 * 59.99571 * 13 12 11 43 43 H 0.97000 * 119.99425 * 180.02562 * 17 16 14 44 44 H 1.09002 * 109.63083 * 68.24728 * 22 7 6 45 45 H 1.09003 * 109.62649 * 188.82850 * 22 7 6 46 46 H 1.09003 * 109.49537 * 292.71141 * 23 4 3 47 47 H 1.09004 * 109.48981 * 52.78984 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4423 0.0006 5 6 4.0357 2.7929 -0.2375 6 6 5.5567 2.7214 -0.4097 7 7 6.1267 2.0282 0.7556 8 6 7.1450 2.5698 1.4529 9 8 7.6032 3.6430 1.1222 10 6 7.7143 1.8420 2.6433 11 6 8.8504 2.6675 3.2504 12 6 9.4287 1.9282 4.4587 13 6 10.5644 2.7540 5.0661 14 6 11.1337 2.0262 6.2566 15 1 10.7259 1.0704 6.5508 16 6 12.1751 2.5805 6.9702 17 7 12.6720 3.7442 6.6117 18 14 12.8812 1.6780 8.4455 19 1 13.4051 0.3573 8.0135 20 1 13.9834 2.4796 9.0351 21 1 11.8159 1.4798 9.4609 22 6 5.5600 0.7253 1.1360 23 6 4.0349 0.8782 1.2509 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 3.7954 3.4320 0.6121 32 1 3.5863 3.2048 -1.1411 33 1 5.9659 3.7298 -0.4721 34 1 5.7968 2.1690 -1.3180 35 1 8.0983 0.8722 2.3267 36 1 6.9323 1.6973 3.3887 37 1 8.4660 3.6371 3.5671 38 1 9.6325 2.8125 2.5052 39 1 8.6468 1.7828 5.2041 40 1 9.8132 0.9589 4.1416 41 1 11.3465 2.8998 4.3210 42 1 10.1796 3.7233 5.3833 43 1 13.4049 4.1340 7.1135 44 1 5.8004 -0.0154 0.3734 45 1 5.9713 0.4134 2.0961 46 1 3.7946 1.5440 2.0798 47 1 3.5849 -0.0990 1.4265 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588314664.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:46 Heat of formation + Delta-G solvation = -58.098332 kcal Electronic energy + Delta-G solvation = -22056.685559 eV Core-core repulsion = 18852.332111 eV Total energy + Delta-G solvation = -3204.353448 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.33374 -38.48489 -35.60367 -34.88937 -33.21303 -32.59750 -31.49624 -29.74306 -28.17883 -25.83040 -24.73985 -24.11949 -22.54981 -21.42455 -20.96669 -19.98608 -18.89945 -17.15854 -16.19524 -16.10611 -15.83874 -15.74872 -15.45962 -15.16573 -14.85157 -14.43423 -14.29981 -13.72708 -13.52741 -13.19466 -12.90495 -12.54930 -12.34220 -12.20910 -12.11614 -11.91421 -11.72672 -11.63830 -11.48857 -11.42166 -11.26606 -10.95338 -10.86557 -10.51998 -10.50421 -10.37309 -9.72966 -9.58769 -9.19872 -9.00204 -8.96920 -8.58435 -8.28446 -5.93310 -3.95851 2.71408 2.85515 3.36412 3.40732 3.42957 3.45398 4.39445 4.41324 4.50526 4.56494 4.64087 4.77754 4.88355 4.91832 4.95829 5.02558 5.13388 5.20743 5.22195 5.31267 5.33778 5.37149 5.41780 5.43273 5.50663 5.56922 5.62686 5.71809 5.76964 5.85007 5.88237 6.15989 6.28145 6.36909 6.57221 6.61007 6.62843 6.86419 7.03920 7.21908 7.34745 7.75845 7.92372 8.08159 8.23681 8.49826 9.11620 9.67503 11.17951 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031183 B = 0.002439 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.722829 B =11477.720294 C =12152.016088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C 0.055 3.945 4 N -0.539 5.539 5 C 0.042 3.958 6 C 0.116 3.884 7 N -0.623 5.623 8 C 0.515 3.485 9 O -0.536 6.536 10 C -0.137 4.137 11 C -0.103 4.103 12 C -0.110 4.110 13 C 0.020 3.980 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.895 5.895 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.112 3.888 23 C 0.036 3.964 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.033 0.967 30 H 0.075 0.925 31 H 0.038 0.962 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.046 0.954 40 H 0.047 0.953 41 H 0.016 0.984 42 H 0.015 0.985 43 H 0.260 0.740 44 H 0.076 0.924 45 H 0.093 0.907 46 H 0.040 0.960 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.441 -7.810 -15.664 30.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.073 4.073 4 N -0.264 5.264 5 C -0.086 4.086 6 C -0.007 4.007 7 N -0.359 5.359 8 C 0.304 3.696 9 O -0.412 6.412 10 C -0.177 4.177 11 C -0.141 4.141 12 C -0.147 4.147 13 C -0.017 4.017 14 C -0.559 4.559 15 H 0.072 0.928 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.011 4.011 23 C -0.092 4.092 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.057 0.943 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.095 0.905 45 H 0.112 0.888 46 H 0.058 0.942 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -23.877 -7.374 -16.168 29.764 hybrid contribution 0.032 0.002 1.482 1.482 sum -23.846 -7.372 -14.686 28.959 Atomic orbital electron populations 1.21739 0.95570 1.01876 1.01787 1.21553 0.95431 0.96221 1.02768 1.22165 0.86757 0.97464 1.00907 1.61959 1.07595 1.21964 1.34861 1.22490 0.95571 0.89223 1.01351 1.21623 0.91516 0.99199 0.88351 1.48269 1.35461 1.21339 1.30786 1.21122 0.78593 0.85761 0.84095 1.90693 1.59482 1.21991 1.69026 1.21813 1.00337 1.00591 0.94966 1.21460 0.95743 0.98579 0.98337 1.21646 0.99259 0.98956 0.94885 1.19093 0.92325 0.95065 0.95240 1.21245 1.16723 1.05308 1.12597 0.92819 1.25050 0.96877 0.95023 0.97677 1.69969 1.26106 1.17052 1.40325 0.86664 0.78643 0.79703 0.82998 1.20283 1.21334 1.20311 1.21934 0.92239 0.85091 1.01863 1.22652 0.95294 1.00732 0.90541 0.92677 0.92441 0.92851 0.91037 0.91872 0.94864 0.90696 0.94333 0.89628 0.88661 0.90991 0.89133 0.89307 0.91873 0.91785 0.93537 0.93463 0.96575 0.96619 0.93004 0.90526 0.88845 0.94178 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 37.16 0.37 -0.36 16 2 C -0.12 -0.68 5.87 -26.73 -0.16 -0.84 16 3 C 0.05 0.36 4.96 -3.82 -0.02 0.34 16 4 N -0.54 -4.24 4.63 -234.02 -1.08 -5.33 16 5 C 0.04 0.36 5.62 -3.70 -0.02 0.34 16 6 C 0.12 1.19 6.60 -3.60 -0.02 1.17 16 7 N -0.62 -7.14 3.00 -172.18 -0.52 -7.66 16 8 C 0.51 7.63 7.71 -10.99 -0.08 7.54 16 9 O -0.54 -10.11 15.44 5.55 0.09 -10.02 16 10 C -0.14 -1.90 4.06 -27.89 -0.11 -2.02 16 11 C -0.10 -1.90 4.50 -26.73 -0.12 -2.02 16 12 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 13 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 14 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 15 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 16 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.73 13.29 55.43 0.74 -26.99 16 18 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 C 0.11 0.94 6.53 -3.36 -0.02 0.92 16 23 C 0.04 0.28 5.48 -3.46 -0.02 0.26 16 24 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.35 6.40 -51.93 -0.33 0.02 16 29 H 0.03 0.23 8.12 -51.93 -0.42 -0.19 16 30 H 0.07 0.45 7.97 -51.93 -0.41 0.04 16 31 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.59 7.99 -51.93 -0.41 0.18 16 33 H 0.10 1.12 7.06 -51.93 -0.37 0.75 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 1.09 7.99 -51.93 -0.41 0.67 16 36 H 0.09 1.07 7.67 -51.93 -0.40 0.67 16 37 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 38 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.09 0.69 6.02 -51.93 -0.31 0.38 16 46 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.09 0.55 6.16 -51.93 -0.32 0.23 16 LS Contribution 368.48 15.07 5.55 5.55 Total: -1.00 -33.63 368.48 -10.00 -43.63 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -8.85 Total: -5.58 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -0.90 Total: -10.62 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: -0.86 Total: -39.98 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.63 -10.00 -43.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588314664.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.469 kcal (2) G-P(sol) polarization free energy of solvation -33.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds