Wall clock time and date at job start Tue Mar 31 2020 06:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47244 * 2 1 4 4 N 1.46901 * 109.46661 * 179.97438 * 3 2 1 5 5 C 1.46906 * 110.99681 * 169.99903 * 4 3 2 6 6 C 1.53242 * 109.33730 * 187.25246 * 5 4 3 7 7 N 1.47080 * 108.52053 * 306.16696 * 6 5 4 8 8 C 1.34777 * 120.88393 * 231.18783 * 7 6 5 9 9 O 1.21288 * 119.99593 * 0.02562 * 8 7 6 10 10 C 1.50697 * 120.00369 * 180.02562 * 8 7 6 11 11 C 1.52997 * 109.47466 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47291 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47116 * 59.99479 * 18 16 14 20 20 H 1.48490 * 109.47381 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46756 * 300.00079 * 18 16 14 22 22 C 1.47083 * 118.23602 * 51.46453 * 7 6 5 23 23 C 1.46898 * 111.00098 * 294.29727 * 4 3 2 24 24 H 1.09003 * 109.46909 * 59.99673 * 1 2 3 25 25 H 1.08996 * 109.47297 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46994 * 300.00402 * 1 2 3 27 27 H 1.08998 * 109.46994 * 239.99598 * 2 1 3 28 28 H 1.09000 * 109.46761 * 119.99818 * 2 1 3 29 29 H 1.08998 * 109.47453 * 59.99879 * 3 2 1 30 30 H 1.09000 * 109.47093 * 299.99614 * 3 2 1 31 31 H 1.08998 * 109.49162 * 67.29455 * 5 4 3 32 32 H 1.08993 * 109.51615 * 307.22651 * 5 4 3 33 33 H 1.09000 * 109.62497 * 186.46160 * 6 5 4 34 34 H 1.08993 * 109.62991 * 65.88399 * 6 5 4 35 35 H 1.09002 * 109.47120 * 59.99760 * 10 8 7 36 36 H 1.08998 * 109.46862 * 300.00562 * 10 8 7 37 37 H 1.09002 * 109.47153 * 59.99773 * 11 10 8 38 38 H 1.09001 * 109.46832 * 299.99964 * 11 10 8 39 39 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 40 40 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 41 41 H 1.09001 * 109.47109 * 299.99380 * 13 12 11 42 42 H 1.09002 * 109.47508 * 59.99571 * 13 12 11 43 43 H 0.97000 * 119.99425 * 180.02562 * 17 16 14 44 44 H 1.09002 * 109.63083 * 68.24728 * 22 7 6 45 45 H 1.09003 * 109.62649 * 188.82850 * 22 7 6 46 46 H 1.09003 * 109.49537 * 292.71141 * 23 4 3 47 47 H 1.09004 * 109.48981 * 52.78984 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4423 0.0006 5 6 4.0357 2.7929 -0.2375 6 6 5.5567 2.7214 -0.4097 7 7 6.1267 2.0282 0.7556 8 6 7.1450 2.5698 1.4529 9 8 7.6032 3.6430 1.1222 10 6 7.7143 1.8420 2.6433 11 6 8.8504 2.6675 3.2504 12 6 9.4287 1.9282 4.4587 13 6 10.5644 2.7540 5.0661 14 6 11.1337 2.0262 6.2566 15 1 10.7259 1.0704 6.5508 16 6 12.1751 2.5805 6.9702 17 7 12.6720 3.7442 6.6117 18 14 12.8812 1.6780 8.4455 19 1 13.4051 0.3573 8.0135 20 1 13.9834 2.4796 9.0351 21 1 11.8159 1.4798 9.4609 22 6 5.5600 0.7253 1.1360 23 6 4.0349 0.8782 1.2509 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 3.7954 3.4320 0.6121 32 1 3.5863 3.2048 -1.1411 33 1 5.9659 3.7298 -0.4721 34 1 5.7968 2.1690 -1.3180 35 1 8.0983 0.8722 2.3267 36 1 6.9323 1.6973 3.3887 37 1 8.4660 3.6371 3.5671 38 1 9.6325 2.8125 2.5052 39 1 8.6468 1.7828 5.2041 40 1 9.8132 0.9589 4.1416 41 1 11.3465 2.8998 4.3210 42 1 10.1796 3.7233 5.3833 43 1 13.4049 4.1340 7.1135 44 1 5.8004 -0.0154 0.3734 45 1 5.9713 0.4134 2.0961 46 1 3.7946 1.5440 2.0798 47 1 3.5849 -0.0990 1.4265 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588314664.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:45 Heat of formation + Delta-G solvation = -79.294022 kcal Electronic energy + Delta-G solvation = -22057.604673 eV Core-core repulsion = 18852.332111 eV Total energy + Delta-G solvation = -3205.272562 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.29603 -39.34301 -36.70208 -36.32003 -34.66022 -33.77422 -32.35058 -31.31593 -29.04875 -27.41083 -25.57904 -24.89876 -24.05392 -22.29004 -21.78230 -21.56844 -19.84136 -18.44193 -18.12042 -17.06337 -16.96098 -16.48292 -16.39753 -16.19607 -15.85993 -15.73383 -15.25499 -14.80618 -14.52527 -14.38914 -13.98365 -13.62107 -13.59542 -13.55128 -13.17010 -12.85424 -12.79116 -12.74625 -12.50635 -12.39374 -12.29781 -12.17831 -12.13901 -12.02792 -11.78648 -11.38312 -11.36009 -11.33106 -11.14635 -10.73819 -10.54024 -9.84081 -9.30748 -8.18043 -6.30396 1.40589 1.44859 1.52694 1.59032 1.94199 2.42426 2.84296 3.14368 3.52848 3.83477 3.92144 3.98726 4.03299 4.10825 4.13741 4.23938 4.35363 4.36931 4.44555 4.49878 4.61546 4.66093 4.67230 4.72983 4.76299 4.79939 4.83396 4.86077 4.90596 4.96191 5.05235 5.17592 5.24612 5.32348 5.33030 5.36177 5.43555 5.48993 5.56654 5.77973 5.88110 5.99897 6.02345 6.25442 6.36883 6.87793 7.14392 7.39048 8.93968 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031183 B = 0.002439 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.722829 B =11477.720294 C =12152.016088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C 0.056 3.944 4 N -0.542 5.542 5 C 0.050 3.950 6 C 0.113 3.887 7 N -0.616 5.616 8 C 0.510 3.490 9 O -0.590 6.590 10 C -0.126 4.126 11 C -0.095 4.095 12 C -0.094 4.094 13 C 0.018 3.982 14 C -0.542 4.542 15 H 0.067 0.933 16 C -0.009 4.009 17 N -0.938 5.938 18 Si 0.971 3.029 19 H -0.264 1.264 20 H -0.286 1.286 21 H -0.264 1.264 22 C 0.106 3.894 23 C 0.038 3.962 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.029 0.971 30 H 0.079 0.921 31 H 0.024 0.976 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.040 0.960 38 H 0.042 0.958 39 H 0.061 0.939 40 H 0.062 0.938 41 H -0.016 1.016 42 H -0.017 1.017 43 H 0.263 0.737 44 H 0.090 0.910 45 H 0.109 0.891 46 H 0.030 0.970 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.099 -10.708 -15.266 32.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.072 4.072 4 N -0.267 5.267 5 C -0.079 4.079 6 C -0.009 4.009 7 N -0.350 5.350 8 C 0.300 3.700 9 O -0.470 6.470 10 C -0.165 4.165 11 C -0.133 4.133 12 C -0.132 4.132 13 C -0.019 4.019 14 C -0.580 4.580 15 H 0.085 0.915 16 C -0.206 4.206 17 N -0.578 5.578 18 Si 0.795 3.205 19 H -0.188 1.188 20 H -0.211 1.211 21 H -0.189 1.189 22 C -0.016 4.016 23 C -0.090 4.090 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.098 0.902 31 H 0.043 0.957 32 H 0.120 0.880 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.003 0.997 42 H 0.002 0.998 43 H 0.071 0.929 44 H 0.108 0.892 45 H 0.127 0.873 46 H 0.048 0.952 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -25.590 -10.321 -15.787 31.790 hybrid contribution 0.506 0.923 1.294 1.668 sum -25.085 -9.398 -14.492 30.457 Atomic orbital electron populations 1.21725 0.95008 1.02228 1.01865 1.21508 0.95865 0.95375 1.02706 1.22204 0.85808 0.98225 1.00944 1.61998 1.08458 1.21199 1.35014 1.22399 0.94202 0.89657 1.01613 1.21690 0.92686 0.98209 0.88352 1.48340 1.34187 1.22203 1.30221 1.21268 0.79076 0.85180 0.84456 1.90677 1.61483 1.24314 1.70543 1.21692 0.99270 1.00449 0.95123 1.21246 0.96822 0.98234 0.97019 1.21440 0.97446 0.98523 0.95784 1.19058 0.93567 0.94692 0.94570 1.21722 1.17094 1.05937 1.13198 0.91479 1.26124 0.97334 0.95867 1.01252 1.70135 1.26746 1.18961 1.41987 0.85416 0.77925 0.78498 0.78684 1.18850 1.21136 1.18885 1.22232 0.92703 0.83525 1.03098 1.22680 0.94762 1.01547 0.90050 0.92462 0.91963 0.92945 0.91285 0.91655 0.95311 0.90217 0.95744 0.87972 0.90788 0.89926 0.86307 0.86595 0.94067 0.93918 0.92023 0.91910 0.99744 0.99813 0.92881 0.89184 0.87319 0.95184 0.87137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 71.98 0.71 -0.42 16 2 C -0.12 -1.03 5.87 30.59 0.18 -0.85 16 3 C 0.06 0.61 4.96 86.30 0.43 1.04 16 4 N -0.54 -7.37 4.63 -894.30 -4.14 -11.51 16 5 C 0.05 0.79 5.62 86.38 0.49 1.27 16 6 C 0.11 2.27 6.60 86.35 0.57 2.84 16 7 N -0.62 -13.33 3.00 -817.03 -2.45 -15.78 16 8 C 0.51 14.90 7.71 87.66 0.68 15.58 16 9 O -0.59 -23.11 15.44 -3.05 -0.05 -23.16 16 10 C -0.13 -3.26 4.06 29.85 0.12 -3.14 16 11 C -0.09 -3.53 4.50 30.59 0.14 -3.39 16 12 C -0.09 -3.90 5.15 30.59 0.16 -3.74 16 13 C 0.02 1.01 4.97 29.85 0.15 1.16 16 14 C -0.54 -31.60 9.11 25.60 0.23 -31.36 16 15 H 0.07 3.65 7.74 -2.91 -0.02 3.62 16 16 C -0.01 -0.51 5.46 84.65 0.46 -0.05 16 17 N -0.94 -59.51 13.29 21.45 0.28 -59.22 16 18 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 19 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 21 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 22 C 0.11 1.48 6.53 86.50 0.57 2.04 16 23 C 0.04 0.48 5.48 86.54 0.47 0.95 16 24 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 25 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.55 6.40 -2.39 -0.02 0.54 16 29 H 0.03 0.35 8.12 -2.39 -0.02 0.33 16 30 H 0.08 0.80 7.97 -2.39 -0.02 0.79 16 31 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.10 1.26 7.99 -2.39 -0.02 1.24 16 33 H 0.07 1.81 7.06 -2.39 -0.02 1.80 16 34 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.12 2.45 7.99 -2.39 -0.02 2.43 16 36 H 0.12 2.41 7.67 -2.39 -0.02 2.39 16 37 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 38 H 0.04 1.74 8.10 -2.39 -0.02 1.72 16 39 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 41 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 42 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 43 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 44 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.11 1.19 6.02 -2.39 -0.01 1.18 16 46 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 47 H 0.11 0.97 6.16 -2.39 -0.01 0.95 16 Total: -1.00 -75.33 368.48 1.92 -73.41 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: 0.90 Total: 7.32 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: 5.35 Total: -18.08 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -6.31 Total: -86.51 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.05 Total: -23.16 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -75.33 1.92 -73.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588314664.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.882 kcal (2) G-P(sol) polarization free energy of solvation -75.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds