Wall clock time and date at job start Tue Mar 31 2020 06:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47024 * 2 1 4 4 N 1.46500 * 109.46583 * 119.99646 * 2 1 3 5 5 C 1.46507 * 119.99639 * 118.53896 * 4 2 1 6 6 C 1.50696 * 109.46609 * 269.99474 * 5 4 2 7 7 H 1.07995 * 120.00768 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99348 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00374 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99686 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47053 * 59.99818 * 10 8 6 12 12 H 1.48495 * 109.47397 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47061 * 300.00007 * 10 8 6 14 14 C 1.34774 * 120.00539 * 298.53157 * 4 2 1 15 15 O 1.21284 * 119.99607 * 5.34312 * 14 4 2 16 16 C 1.50697 * 120.00321 * 185.34394 * 14 4 2 17 17 C 1.53004 * 109.47136 * 186.30742 * 16 14 4 18 18 C 1.53117 * 109.52479 * 184.99823 * 17 16 14 19 19 C 1.53030 * 109.27892 * 182.43947 * 18 17 16 20 20 N 1.46843 * 109.52369 * 59.17945 * 19 18 17 21 21 C 1.46901 * 111.00063 * 174.16020 * 20 19 18 22 22 C 1.46844 * 111.20067 * 298.25685 * 20 19 18 23 23 C 1.53037 * 109.52149 * 61.73945 * 22 20 19 24 24 H 1.08996 * 109.47285 * 306.59725 * 1 2 3 25 25 H 1.08999 * 109.46692 * 66.59358 * 1 2 3 26 26 H 1.09001 * 109.47063 * 186.59334 * 1 2 3 27 27 H 1.08993 * 109.47121 * 239.99543 * 2 1 3 28 28 H 1.09002 * 109.47387 * 173.87053 * 3 2 1 29 29 H 1.09000 * 109.47428 * 293.87215 * 3 2 1 30 30 H 1.08999 * 109.47539 * 53.87526 * 3 2 1 31 31 H 1.08990 * 109.47265 * 29.99689 * 5 4 2 32 32 H 1.09004 * 109.46640 * 149.99586 * 5 4 2 33 33 H 0.97000 * 120.00024 * 180.02562 * 9 8 6 34 34 H 1.08997 * 109.47127 * 66.30834 * 16 14 4 35 35 H 1.09000 * 109.47159 * 306.30424 * 16 14 4 36 36 H 1.09002 * 109.57166 * 305.15725 * 17 16 14 37 37 H 1.09000 * 109.49891 * 62.49771 * 18 17 16 38 38 H 1.09003 * 109.53213 * 302.40032 * 18 17 16 39 39 H 1.08998 * 109.46806 * 299.16250 * 19 18 17 40 40 H 1.09007 * 109.46488 * 179.19312 * 19 18 17 41 41 H 1.08993 * 109.47432 * 59.99683 * 21 20 19 42 42 H 1.09000 * 109.47363 * 299.99929 * 21 20 19 43 43 H 1.09003 * 109.47160 * 180.02562 * 21 20 19 44 44 H 1.09001 * 109.46629 * 181.75559 * 22 20 19 45 45 H 1.09006 * 109.45939 * 301.72689 * 22 20 19 46 46 H 1.09004 * 109.50095 * 180.87947 * 23 22 20 47 47 H 1.09003 * 109.53254 * 60.78449 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.8339 -1.9002 1.0621 6 6 1.9366 -3.1107 1.0371 7 1 0.8660 -2.9910 1.1131 8 6 2.4827 -4.3711 0.9173 9 7 3.7864 -4.5168 0.8243 10 14 1.3705 -5.8716 0.8856 11 1 0.4390 -5.7730 -0.2668 12 1 2.1971 -7.0977 0.7497 13 1 0.5911 -5.9368 2.1479 14 6 1.7172 -0.2131 2.4201 15 8 0.9635 0.7302 2.5345 16 6 2.3172 -0.8512 3.6464 17 6 1.6978 -0.2294 4.8997 18 6 2.3938 -0.7862 6.1447 19 6 1.7299 -0.2074 7.3961 20 7 0.3063 -0.5671 7.4073 21 6 -0.3330 -0.1469 8.6614 22 6 -0.3930 -0.0033 6.2456 23 6 0.2076 -0.5760 4.9598 24 1 -0.3634 0.6127 0.8250 25 1 -0.3633 0.4082 -0.9431 26 1 -0.3633 -1.0209 0.1180 27 1 1.8934 -0.5139 -0.8899 28 1 3.1245 1.4445 0.1097 29 1 1.7690 1.9237 -0.9397 30 1 1.5899 1.9870 0.8300 31 1 3.4052 -1.8522 0.1352 32 1 3.5182 -1.9724 1.9075 33 1 4.1705 -5.4035 0.7396 34 1 3.3944 -0.6845 3.6526 35 1 2.1153 -1.9222 3.6344 36 1 1.8189 0.8534 4.8682 37 1 3.4470 -0.5059 6.1287 38 1 2.3065 -1.8727 6.1558 39 1 1.8303 0.8779 7.3916 40 1 2.2139 -0.6130 8.2847 41 1 -0.2447 0.9340 8.7699 42 1 0.1580 -0.6376 9.5018 43 1 -1.3866 -0.4258 8.6434 44 1 -1.4509 -0.2606 6.2984 45 1 -0.2826 1.0811 6.2464 46 1 -0.3013 -0.1455 4.0973 47 1 0.0852 -1.6591 4.9513 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589834983.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:14 Heat of formation + Delta-G solvation = -54.409930 kcal Electronic energy + Delta-G solvation = -23862.233785 eV Core-core repulsion = 20658.040278 eV Total energy + Delta-G solvation = -3204.193507 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.67755 -38.49860 -35.48841 -34.12849 -33.04927 -31.52589 -30.62458 -28.76288 -26.93600 -26.56874 -25.26050 -22.97678 -22.87324 -22.22598 -20.86405 -19.33809 -17.85100 -16.59391 -15.95714 -15.70013 -15.18200 -14.98562 -14.77391 -14.41940 -14.38724 -13.86109 -13.58028 -13.16434 -12.75826 -12.64550 -12.51571 -12.26920 -12.23348 -11.95193 -11.76234 -11.63368 -11.47295 -11.34356 -11.11991 -10.92921 -10.91278 -10.84746 -10.59500 -10.39554 -10.26012 -10.13502 -9.99060 -9.92626 -9.67518 -8.66763 -8.49836 -8.26598 -7.61864 -6.15523 -4.22657 3.26527 3.31220 3.33825 3.53195 3.99629 4.02717 4.36448 4.97941 5.02015 5.10636 5.17959 5.23250 5.38614 5.42027 5.48639 5.59517 5.63307 5.71089 5.75672 5.78654 5.82552 5.91468 5.95228 6.02312 6.04350 6.10920 6.21910 6.28648 6.31749 6.38543 6.41900 6.49525 6.50877 6.69119 6.77273 6.83496 6.88527 6.91819 7.15040 7.18803 7.22606 7.66235 7.80855 8.09834 8.46060 8.84299 9.14968 9.45630 10.90943 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013024 B = 0.005753 C = 0.004571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.291229 B = 4866.266820 C = 6124.505007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.148 3.852 3 C -0.163 4.163 4 N -0.595 5.595 5 C 0.238 3.762 6 C -0.535 4.535 7 H 0.060 0.940 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.894 3.106 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.521 3.479 15 O -0.571 6.571 16 C -0.133 4.133 17 C -0.068 4.068 18 C -0.114 4.114 19 C 0.059 3.941 20 N -0.544 5.544 21 C 0.026 3.974 22 C 0.060 3.940 23 C -0.113 4.113 24 H 0.072 0.928 25 H 0.047 0.953 26 H 0.056 0.944 27 H 0.080 0.920 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.032 0.968 32 H 0.038 0.962 33 H 0.265 0.735 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.029 0.971 40 H 0.070 0.930 41 H 0.021 0.979 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.030 0.970 46 H 0.083 0.917 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.355 8.507 8.547 12.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.044 3.956 3 C -0.222 4.222 4 N -0.325 5.325 5 C 0.118 3.882 6 C -0.573 4.573 7 H 0.078 0.922 8 C -0.137 4.137 9 N -0.531 5.531 10 Si 0.722 3.278 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.310 3.690 15 O -0.453 6.453 16 C -0.173 4.173 17 C -0.087 4.087 18 C -0.152 4.152 19 C -0.069 4.069 20 N -0.269 5.269 21 C -0.123 4.123 22 C -0.068 4.068 23 C -0.151 4.151 24 H 0.091 0.909 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.122 0.878 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.048 0.952 40 H 0.088 0.912 41 H 0.039 0.961 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.048 0.952 46 H 0.102 0.898 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.603 8.321 8.523 12.445 hybrid contribution -0.351 -0.267 -0.103 0.453 sum -3.954 8.055 8.420 12.305 Atomic orbital electron populations 1.22155 0.95756 1.02507 1.01527 1.20789 0.94201 0.92138 0.88442 1.22176 1.00756 0.97145 1.02074 1.48355 1.51902 1.27949 1.04321 1.19432 0.90286 0.80242 0.98281 1.21467 0.93771 0.90757 1.51342 0.92169 1.24929 0.95029 0.98980 0.94800 1.69908 1.10109 1.23653 1.49418 0.86608 0.80520 0.81827 0.78854 1.20201 1.21183 1.20011 1.20429 0.80821 0.82878 0.84852 1.90495 1.37643 1.30255 1.86886 1.21697 1.00601 1.02902 0.92080 1.20899 0.95055 0.99922 0.92809 1.21672 0.98510 1.01696 0.93320 1.22062 0.88285 0.97687 0.98839 1.61942 1.02663 1.59994 1.02329 1.22330 0.99842 0.97876 0.92205 1.22096 0.97760 0.96408 0.90521 1.21702 0.95476 1.01412 0.96484 0.90910 0.93391 0.92480 0.90193 0.93256 0.92846 0.90947 0.94972 0.94370 0.92524 0.89798 0.87831 0.91269 0.91623 0.90769 0.95249 0.91150 0.96070 0.91650 0.91602 0.91271 0.95196 0.89809 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.03 37.16 0.34 -2.55 16 2 C 0.15 2.77 3.28 -67.93 -0.22 2.54 16 3 C -0.16 -2.69 9.00 37.16 0.33 -2.35 16 4 N -0.59 -12.32 2.41 -167.47 -0.40 -12.73 16 5 C 0.24 5.59 4.86 -5.19 -0.03 5.56 16 6 C -0.53 -13.81 9.25 -34.44 -0.32 -14.13 16 7 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 8 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -24.50 13.29 55.43 0.74 -23.77 16 10 Si 0.89 20.67 29.54 -169.99 -5.02 15.64 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 14 C 0.52 10.41 6.70 -10.99 -0.07 10.33 16 15 O -0.57 -11.77 10.63 5.55 0.06 -11.71 16 16 C -0.13 -2.38 3.61 -27.88 -0.10 -2.48 16 17 C -0.07 -1.06 1.90 -90.50 -0.17 -1.23 16 18 C -0.11 -1.55 5.38 -26.66 -0.14 -1.70 16 19 C 0.06 0.73 5.46 -3.84 -0.02 0.71 16 20 N -0.54 -7.17 4.91 -242.97 -1.19 -8.37 16 21 C 0.03 0.27 9.59 60.07 0.58 0.85 16 22 C 0.06 0.83 5.46 -3.84 -0.02 0.81 16 23 C -0.11 -1.81 5.10 -26.65 -0.14 -1.95 16 24 H 0.07 1.38 6.31 -51.93 -0.33 1.05 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.08 1.50 7.78 -51.93 -0.40 1.09 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.07 1.29 6.43 -51.93 -0.33 0.95 16 31 H 0.03 0.80 7.91 -51.93 -0.41 0.39 16 32 H 0.04 0.92 6.56 -51.93 -0.34 0.58 16 33 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.08 1.42 7.88 -51.93 -0.41 1.01 16 35 H 0.10 2.05 7.64 -51.93 -0.40 1.65 16 36 H 0.07 1.14 7.86 -51.93 -0.41 0.73 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 41 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 44 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 45 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 1.50 6.27 -51.93 -0.33 1.17 16 47 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 360.80 15.07 5.44 5.44 Total: -1.00 -27.37 360.80 -9.28 -36.65 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -8.81 Total: 2.79 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -0.08 Total: -3.96 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: -0.86 Total: -44.86 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.06 Total: -11.71 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -27.37 -9.28 -36.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589834983.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.760 kcal (2) G-P(sol) polarization free energy of solvation -27.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds