Wall clock time and date at job start Tue Mar 31 2020 05:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46862 * 2 1 4 4 H 1.08995 * 109.62841 * 298.15689 * 3 2 1 5 5 C 1.53245 * 109.62871 * 58.54380 * 3 2 1 6 6 N 1.46952 * 109.31123 * 173.33460 * 5 3 2 7 7 C 1.46903 * 110.96836 * 172.93572 * 6 5 3 8 8 C 1.46894 * 111.44513 * 297.19130 * 6 5 3 9 9 C 1.53235 * 109.34083 * 63.01474 * 8 6 5 10 10 N 1.47074 * 108.52556 * 306.17152 * 9 8 6 11 11 C 1.34768 * 120.88357 * 231.20592 * 10 9 8 12 12 O 1.21285 * 120.00162 * 185.34050 * 11 10 9 13 13 C 1.50704 * 120.00229 * 5.34224 * 11 10 9 14 14 C 1.52996 * 109.47262 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47092 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.47184 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.46882 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00133 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99773 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00176 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00194 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47121 * 90.00327 * 21 19 17 23 23 H 1.48501 * 109.47574 * 210.00668 * 21 19 17 24 24 H 1.48502 * 109.47284 * 330.00821 * 21 19 17 25 25 H 1.09003 * 109.47453 * 294.92060 * 1 2 3 26 26 H 1.09007 * 109.47299 * 174.92577 * 1 2 3 27 27 H 1.09001 * 109.47395 * 54.92730 * 1 2 3 28 28 H 1.08994 * 109.47170 * 119.99867 * 2 1 3 29 29 H 1.08999 * 109.47123 * 240.00295 * 2 1 3 30 30 H 1.09002 * 109.49162 * 293.49691 * 5 3 2 31 31 H 1.08998 * 109.49238 * 53.57594 * 5 3 2 32 32 H 1.08991 * 109.47139 * 188.45781 * 7 6 5 33 33 H 1.09003 * 109.46932 * 308.46502 * 7 6 5 34 34 H 1.09000 * 109.46923 * 68.46165 * 7 6 5 35 35 H 1.09007 * 109.49475 * 303.05573 * 8 6 5 36 36 H 1.09000 * 109.49196 * 182.98153 * 8 6 5 37 37 H 1.09001 * 109.63023 * 186.46016 * 9 8 6 38 38 H 1.09001 * 109.62646 * 65.88113 * 9 8 6 39 39 H 1.08997 * 109.46711 * 300.00185 * 13 11 10 40 40 H 1.08998 * 109.46976 * 59.99969 * 13 11 10 41 41 H 1.08997 * 109.47273 * 299.99674 * 14 13 11 42 42 H 1.08998 * 109.47286 * 59.99993 * 14 13 11 43 43 H 1.08997 * 109.46981 * 300.00081 * 15 14 13 44 44 H 1.09005 * 109.47026 * 59.99603 * 15 14 13 45 45 H 1.08997 * 109.47496 * 300.00095 * 16 15 14 46 46 H 1.08998 * 109.46971 * 60.00357 * 16 15 14 47 47 H 0.97000 * 120.00523 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.7052 1.9492 -0.9051 5 6 1.5014 2.1789 1.2313 6 7 2.1201 3.5094 1.3110 7 6 1.5082 4.3106 2.3796 8 6 3.5749 3.4153 1.4909 9 6 4.1943 2.7310 0.2677 10 7 3.5098 1.4470 0.0540 11 6 4.2106 0.3047 -0.0882 12 8 3.6370 -0.7289 -0.3600 13 6 5.7070 0.3114 0.0904 14 6 6.2527 -1.1017 -0.1242 15 6 7.7719 -1.0946 0.0566 16 6 8.3176 -2.5079 -0.1575 17 6 9.8141 -2.5008 0.0200 18 1 10.3249 -1.5805 0.2617 19 6 10.5311 -3.6695 -0.1252 20 7 9.9091 -4.7904 -0.4190 21 14 12.3861 -3.6606 0.0940 22 1 12.7177 -3.9261 1.5170 23 1 12.9906 -4.7144 -0.7600 24 1 12.9249 -2.3342 -0.3005 25 1 -0.3634 0.4330 0.9320 26 1 -0.3634 -1.0237 -0.0909 27 1 -0.3634 0.5905 -0.8411 28 1 1.8933 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 0.4193 2.2817 1.1491 31 1 1.7461 1.6125 2.1298 32 1 1.8757 5.3350 2.3214 33 1 0.4246 4.3059 2.2621 34 1 1.7705 3.8850 3.3482 35 1 3.7939 2.8306 2.3845 36 1 3.9936 4.4159 1.5990 37 1 5.2554 2.5552 0.4446 38 1 4.0666 3.3646 -0.6100 39 1 6.1565 0.9884 -0.6360 40 1 5.9510 0.6463 1.0986 41 1 5.8032 -1.7789 0.6020 42 1 6.0087 -1.4361 -1.1325 43 1 8.2211 -0.4175 -0.6699 44 1 8.0163 -0.7600 1.0648 45 1 7.8684 -3.1848 0.5692 46 1 8.0732 -2.8429 -1.1655 47 1 10.4135 -5.6125 -0.5215 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590522926.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:52 Heat of formation + Delta-G solvation = -40.979687 kcal Electronic energy + Delta-G solvation = -22748.071792 eV Core-core repulsion = 19544.460664 eV Total energy + Delta-G solvation = -3203.611128 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.68793 -38.24254 -35.34098 -34.73491 -34.24863 -32.51239 -29.91368 -29.79816 -28.40896 -25.94427 -24.62576 -24.47969 -22.50790 -21.60511 -20.96469 -19.93156 -18.88195 -16.84758 -16.28484 -16.11832 -15.90809 -15.68952 -15.15648 -14.98474 -14.65405 -14.44688 -13.78832 -13.67189 -13.47179 -13.38500 -12.58497 -12.55331 -12.42551 -12.31827 -12.14587 -11.88851 -11.76545 -11.56035 -11.51577 -11.43687 -10.98277 -10.97511 -10.82862 -10.51056 -10.47206 -10.37151 -9.59294 -9.30153 -9.02731 -8.96437 -8.86448 -8.55234 -8.29277 -5.94017 -3.96521 2.71667 2.83883 3.34675 3.40696 3.43908 3.50912 4.39141 4.50137 4.56479 4.59982 4.76844 4.89332 4.98491 4.99191 5.08816 5.13246 5.20998 5.30925 5.32529 5.34543 5.37641 5.41324 5.43803 5.46852 5.51388 5.63810 5.69753 5.87943 5.98255 6.15658 6.20205 6.23905 6.32722 6.54175 6.56533 6.58583 6.68610 6.86303 7.03756 7.21738 7.38880 7.75615 7.91912 8.07602 8.28465 8.49383 9.11282 9.67065 11.17345 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028141 B = 0.002886 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.753539 B = 9700.283832 C =10473.965266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.120 4.120 3 C 0.153 3.847 4 H 0.076 0.924 5 C 0.044 3.956 6 N -0.545 5.545 7 C 0.025 3.975 8 C 0.039 3.961 9 C 0.111 3.889 10 N -0.621 5.621 11 C 0.516 3.484 12 O -0.527 6.527 13 C -0.140 4.140 14 C -0.102 4.102 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.048 0.952 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.038 0.962 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.026 0.974 35 H 0.040 0.960 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.046 0.954 44 H 0.045 0.955 45 H 0.015 0.985 46 H 0.016 0.984 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.881 19.529 3.873 27.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.158 4.158 3 C 0.049 3.951 4 H 0.093 0.907 5 C -0.084 4.084 6 N -0.270 5.270 7 C -0.123 4.123 8 C -0.090 4.090 9 C -0.012 4.012 10 N -0.356 5.356 11 C 0.305 3.695 12 O -0.403 6.403 13 C -0.179 4.179 14 C -0.140 4.140 15 C -0.148 4.148 16 C -0.017 4.017 17 C -0.558 4.558 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.120 0.880 30 H 0.105 0.895 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.044 0.956 35 H 0.058 0.942 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.229 19.017 3.250 27.239 hybrid contribution 1.176 -0.260 1.032 1.587 sum -18.052 18.756 4.282 26.382 Atomic orbital electron populations 1.21954 0.96721 1.01831 1.01058 1.22112 0.93933 0.94030 1.05719 1.21358 0.79152 0.97133 0.97417 0.90650 1.22658 0.99502 0.88568 0.97696 1.61894 1.03867 1.15110 1.46098 1.22363 0.99989 0.97984 0.91927 1.22520 0.88084 1.01057 0.97314 1.21839 0.97041 0.84367 0.97958 1.48319 1.06397 1.07551 1.73319 1.21060 0.90306 0.82518 0.75571 1.90697 1.70585 1.32083 1.46932 1.21854 0.90764 1.01964 1.03364 1.21447 0.97069 0.92868 1.02637 1.21646 0.92020 1.01169 0.99918 1.19092 0.95212 0.90246 0.97151 1.21287 0.92748 0.94318 1.47479 0.92772 1.25041 0.98388 0.95705 0.95445 1.69973 1.35560 0.99198 1.48764 0.86616 0.85841 0.77677 0.77976 1.20727 1.21249 1.19915 0.93329 0.92431 0.92895 0.91536 0.88012 0.89469 0.94381 0.91136 0.91319 0.95581 0.94160 0.89400 0.88743 0.90544 0.89288 0.89419 0.91884 0.91782 0.93498 0.93584 0.96633 0.96584 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.38 37.16 0.35 -1.08 16 2 C -0.12 -1.42 3.93 -26.73 -0.11 -1.52 16 3 C 0.15 1.62 3.19 -67.49 -0.22 1.41 16 4 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 5 C 0.04 0.40 4.33 -3.67 -0.02 0.38 16 6 N -0.55 -4.53 4.88 -242.56 -1.18 -5.72 16 7 C 0.03 0.16 9.62 60.07 0.58 0.74 16 8 C 0.04 0.30 5.62 -3.71 -0.02 0.28 16 9 C 0.11 0.95 6.51 -3.61 -0.02 0.92 16 10 N -0.62 -7.08 3.01 -164.93 -0.50 -7.58 16 11 C 0.52 7.35 7.52 -10.99 -0.08 7.27 16 12 O -0.53 -9.17 11.68 5.55 0.06 -9.10 16 13 C -0.14 -1.90 4.06 -27.88 -0.11 -2.01 16 14 C -0.10 -1.84 4.50 -26.73 -0.12 -1.96 16 15 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 16 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 17 C -0.52 -15.08 9.11 -34.44 -0.31 -15.40 16 18 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.70 13.29 55.43 0.74 -26.96 16 21 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 25 H 0.05 0.39 6.86 -51.93 -0.36 0.03 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.92 7.39 -51.93 -0.38 0.53 16 29 H 0.10 1.47 6.14 -51.93 -0.32 1.15 16 30 H 0.09 0.68 6.79 -51.93 -0.35 0.33 16 31 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.39 8.01 -51.93 -0.42 -0.02 16 34 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.04 0.35 8.14 -51.92 -0.42 -0.08 16 36 H 0.09 0.53 8.11 -51.93 -0.42 0.11 16 37 H 0.09 0.70 6.00 -51.93 -0.31 0.39 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 1.06 7.79 -51.93 -0.40 0.65 16 40 H 0.09 1.05 7.88 -51.93 -0.41 0.65 16 41 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 42 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 361.98 15.07 5.46 5.46 Total: -1.00 -32.83 361.98 -9.73 -42.56 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -8.83 Total: -4.16 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -0.46 Total: -11.47 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: -0.94 Total: -40.26 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.06 Total: -9.10 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.83 -9.73 -42.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590522926.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.578 kcal (2) G-P(sol) polarization free energy of solvation -32.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds