Wall clock time and date at job start Tue Mar 31 2020 05:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47075 * 2 1 4 4 C 1.50698 * 109.47310 * 179.97438 * 3 2 1 5 5 O 1.21279 * 119.99918 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00351 * 179.97438 * 4 3 2 7 7 C 1.46500 * 120.00149 * 180.02562 * 6 4 3 8 8 C 1.53121 * 109.52517 * 85.31957 * 7 6 4 9 9 C 1.53035 * 109.28022 * 177.56329 * 8 7 6 10 10 N 1.46846 * 109.52157 * 300.81661 * 9 8 7 11 11 C 1.46897 * 111.00257 * 185.83944 * 10 9 8 12 12 H 1.08996 * 109.47186 * 296.37809 * 11 10 9 13 13 C 1.53005 * 109.47185 * 176.37890 * 11 10 9 14 14 C 1.53001 * 109.46979 * 56.38177 * 11 10 9 15 15 C 1.50700 * 109.47123 * 182.46466 * 14 11 10 16 16 H 1.07999 * 119.99928 * 5.59776 * 15 14 11 17 17 C 1.37882 * 119.99630 * 185.60055 * 15 14 11 18 18 N 1.31509 * 120.00358 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99613 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47066 * 60.00283 * 19 17 15 21 21 H 1.48503 * 109.47119 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47653 * 300.00205 * 19 17 15 23 23 C 1.46851 * 111.19987 * 61.73969 * 10 9 8 24 24 C 1.53033 * 109.52370 * 298.26530 * 23 10 9 25 25 H 1.09000 * 109.47118 * 300.00252 * 1 2 3 26 26 H 1.08996 * 109.47081 * 60.00071 * 1 2 3 27 27 H 1.08999 * 109.46937 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47118 * 239.99748 * 2 1 3 29 29 H 1.08996 * 109.47081 * 119.99929 * 2 1 3 30 30 H 1.09000 * 109.47353 * 59.99891 * 3 2 1 31 31 H 1.08996 * 109.47108 * 299.99912 * 3 2 1 32 32 H 0.96995 * 119.99926 * 0.02562 * 6 4 3 33 33 H 1.09002 * 109.57615 * 325.15964 * 7 6 4 34 34 H 1.09007 * 109.49788 * 297.49994 * 8 7 6 35 35 H 1.08998 * 109.50576 * 57.61731 * 8 7 6 36 36 H 1.09001 * 109.45952 * 180.80419 * 9 8 7 37 37 H 1.08993 * 109.46824 * 60.83118 * 9 8 7 38 38 H 1.08997 * 109.46953 * 60.00046 * 13 11 10 39 39 H 1.09001 * 109.47125 * 180.02562 * 13 11 10 40 40 H 1.09004 * 109.46848 * 300.00318 * 13 11 10 41 41 H 1.09001 * 109.47010 * 302.46259 * 14 11 10 42 42 H 1.08997 * 109.47518 * 62.45842 * 14 11 10 43 43 H 0.97001 * 120.00020 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.46348 * 178.24298 * 23 10 9 45 45 H 1.09000 * 109.44805 * 58.27068 * 23 10 9 46 46 H 1.08999 * 109.50425 * 299.22984 * 24 23 10 47 47 H 1.09002 * 109.50074 * 179.11477 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1534 0.3922 0.0006 6 7 4.2209 2.6097 0.0002 7 6 5.6859 2.6097 0.0003 8 6 6.1977 2.4914 -1.4380 9 6 7.7268 2.5531 -1.4369 10 7 8.1662 3.8231 -0.8450 11 6 9.6230 3.9781 -0.9528 12 1 10.1153 3.1961 -0.3748 13 6 10.0318 5.3485 -0.4087 14 6 10.0404 3.8671 -2.4206 15 6 11.5405 3.9655 -2.5251 16 1 12.1429 4.0034 -1.6295 17 6 12.1440 4.0073 -3.7641 18 7 11.4105 3.9607 -4.8547 19 14 14.0034 4.1301 -3.8936 20 1 14.6244 2.9547 -3.2316 21 1 14.3992 4.1578 -5.3247 22 1 14.4651 5.3745 -3.2276 23 6 7.7267 3.9384 0.5515 24 6 6.1976 3.9178 0.6097 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.7359 3.4497 -0.0001 33 1 6.0511 1.7670 0.5873 34 1 5.8721 1.5419 -1.8631 35 1 5.8007 3.3130 -2.0343 36 1 8.0938 2.4835 -2.4609 37 1 8.1234 1.7234 -0.8519 38 1 9.7344 5.4276 0.6369 39 1 11.1127 5.4637 -0.4891 40 1 9.5393 6.1305 -0.9867 41 1 9.7105 2.9082 -2.8206 42 1 9.5826 4.6754 -2.9907 43 1 11.8351 3.9905 -5.7263 44 1 8.0936 4.8748 0.9716 45 1 8.1233 3.1020 1.1270 46 1 5.8005 4.7618 0.0457 47 1 5.8720 3.9876 1.6476 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592998475.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:17 Heat of formation + Delta-G solvation = -62.320975 kcal Electronic energy + Delta-G solvation = -22652.161987 eV Core-core repulsion = 19447.625432 eV Total energy + Delta-G solvation = -3204.536555 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.11923 -38.62261 -35.74279 -34.53290 -33.43997 -32.03570 -30.77704 -29.60824 -27.89258 -26.86697 -24.28007 -23.19274 -22.29423 -21.79333 -20.39326 -19.82609 -19.06551 -17.17930 -16.70226 -16.18016 -16.01915 -15.10526 -14.64213 -14.43892 -14.36783 -14.15111 -13.68155 -13.49727 -13.37642 -13.21151 -12.94726 -12.35724 -12.29134 -12.03863 -11.89537 -11.56396 -11.43795 -11.33018 -11.05820 -11.01097 -10.96993 -10.87029 -10.80150 -10.69630 -10.42094 -10.19418 -9.81224 -9.76474 -9.21565 -9.11787 -8.92942 -8.30870 -7.68009 -5.98045 -3.99532 2.57590 3.09089 3.34070 3.38759 3.40777 4.36854 4.53005 4.53965 4.62530 4.72541 4.82948 5.01649 5.16089 5.20779 5.23225 5.33019 5.37514 5.45086 5.46037 5.58333 5.69344 5.74538 5.77851 5.87974 5.90172 5.95589 6.00016 6.05584 6.12302 6.19306 6.25890 6.35444 6.40677 6.53993 6.56568 6.73543 6.95049 7.13997 7.43013 7.56187 7.64568 7.83329 7.88914 8.09661 8.17135 8.45633 9.06432 9.63306 11.13281 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033227 B = 0.002913 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.497815 B = 9609.820414 C =10159.975196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.141 4.141 4 C 0.509 3.491 5 O -0.541 6.541 6 N -0.727 5.727 7 C 0.143 3.857 8 C -0.122 4.122 9 C 0.055 3.945 10 N -0.534 5.534 11 C 0.085 3.915 12 H 0.025 0.975 13 C -0.129 4.129 14 C 0.031 3.969 15 C -0.517 4.517 16 H 0.054 0.946 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.891 3.109 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.054 3.946 24 C -0.120 4.120 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.398 0.602 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.027 0.973 38 H 0.031 0.969 39 H 0.066 0.934 40 H 0.054 0.946 41 H 0.015 0.985 42 H 0.029 0.971 43 H 0.261 0.739 44 H 0.081 0.919 45 H 0.027 0.973 46 H 0.075 0.925 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.690 -1.313 11.384 22.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.181 4.181 4 C 0.295 3.705 5 O -0.418 6.418 6 N -0.378 5.378 7 C 0.039 3.961 8 C -0.161 4.161 9 C -0.073 4.073 10 N -0.260 5.260 11 C -0.022 4.022 12 H 0.043 0.957 13 C -0.187 4.187 14 C -0.007 4.007 15 C -0.556 4.556 16 H 0.072 0.928 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.075 4.075 24 C -0.158 4.158 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.232 0.768 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.045 0.955 38 H 0.050 0.950 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.033 0.967 42 H 0.047 0.953 43 H 0.070 0.930 44 H 0.099 0.901 45 H 0.045 0.955 46 H 0.094 0.906 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.450 -1.699 10.930 22.375 hybrid contribution 1.199 -0.124 0.261 1.233 sum -18.251 -1.822 11.191 21.486 Atomic orbital electron populations 1.21795 0.95562 1.01939 1.01709 1.21278 0.95146 0.94770 1.03623 1.21726 0.91971 1.00167 1.04238 1.20773 0.90261 0.83759 0.75676 1.90714 1.70528 1.31329 1.49203 1.46179 1.07555 1.08509 1.75513 1.21098 0.78612 0.98857 0.97538 1.21957 0.96145 1.02156 0.95832 1.22094 0.93532 0.89953 1.01747 1.62061 1.15073 1.33512 1.15316 1.21814 0.83559 0.95936 1.00841 0.95667 1.21766 1.02030 0.97172 0.97729 1.19199 0.95659 0.97512 0.88287 1.21149 0.91963 1.50450 0.92019 0.92757 1.24986 0.97963 0.95434 0.95939 1.69954 1.35152 1.50626 0.97540 0.86686 0.85984 0.78590 0.76890 1.20345 1.21340 1.20264 1.22045 0.93542 1.01120 0.90793 1.21846 0.96662 0.96983 1.00299 0.92764 0.92677 0.92436 0.91174 0.91308 0.89114 0.88950 0.76782 0.89962 0.91590 0.91057 0.88797 0.95496 0.95016 0.91481 0.92663 0.96707 0.95277 0.92981 0.90080 0.95514 0.90628 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.11 -0.92 5.22 -26.73 -0.14 -1.06 16 3 C -0.14 -1.06 5.70 -27.89 -0.16 -1.22 16 4 C 0.51 5.86 7.80 -10.99 -0.09 5.78 16 5 O -0.54 -8.66 15.64 5.56 0.09 -8.57 16 6 N -0.73 -7.43 5.08 -53.69 -0.27 -7.70 16 7 C 0.14 1.83 2.52 -67.81 -0.17 1.66 16 8 C -0.12 -1.81 5.67 -26.65 -0.15 -1.96 16 9 C 0.06 0.98 5.15 -3.84 -0.02 0.96 16 10 N -0.53 -9.56 4.53 -226.70 -1.03 -10.59 16 11 C 0.09 1.78 2.13 -67.71 -0.14 1.64 16 12 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 13 C -0.13 -2.46 8.74 37.16 0.32 -2.13 16 14 C 0.03 0.78 4.22 -27.88 -0.12 0.67 16 15 C -0.52 -14.38 8.27 -34.44 -0.28 -14.66 16 16 H 0.05 1.47 7.10 -52.49 -0.37 1.09 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 19 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C 0.05 0.78 5.21 -3.83 -0.02 0.76 16 24 C -0.12 -1.39 5.57 -26.65 -0.15 -1.53 16 25 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 29 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.40 2.86 8.61 -40.82 -0.35 2.51 16 33 H 0.08 1.22 7.58 -51.93 -0.39 0.83 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.09 1.89 5.86 -51.93 -0.30 1.58 16 37 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.03 0.50 6.27 -51.93 -0.33 0.18 16 39 H 0.07 1.35 6.89 -51.93 -0.36 0.99 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.01 0.40 6.09 -51.93 -0.32 0.09 16 42 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.08 1.12 5.99 -51.93 -0.31 0.81 16 45 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 363.85 15.07 5.48 5.48 Total: -1.00 -31.83 363.85 -9.49 -41.32 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -8.63 Total: -0.39 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -0.85 Total: -10.14 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: -0.56 Total: -44.31 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.09 Total: -8.57 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.83 -9.49 -41.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592998475.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.004 kcal (2) G-P(sol) polarization free energy of solvation -31.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds