Wall clock time and date at job start Tue Mar 31 2020 05:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47027 * 2 1 4 4 C 1.50703 * 109.47088 * 179.97438 * 3 2 1 5 5 O 1.21284 * 120.00199 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00259 * 180.02562 * 4 3 2 7 7 C 1.46496 * 120.00351 * 180.02562 * 6 4 3 8 8 C 1.53112 * 109.52586 * 204.99759 * 7 6 4 9 9 C 1.53038 * 109.27981 * 182.43929 * 8 7 6 10 10 N 1.46847 * 109.52019 * 59.18367 * 9 8 7 11 11 C 1.46905 * 110.99586 * 174.15901 * 10 9 8 12 12 H 1.08996 * 109.46979 * 310.94405 * 11 10 9 13 13 C 1.52993 * 109.47303 * 70.94762 * 11 10 9 14 14 C 1.52999 * 109.46820 * 190.94478 * 11 10 9 15 15 C 1.50703 * 109.47462 * 63.87207 * 14 11 10 16 16 H 1.08000 * 119.99782 * 0.02562 * 15 14 11 17 17 C 1.37877 * 120.00456 * 179.97438 * 15 14 11 18 18 N 1.31511 * 119.99696 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00077 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47036 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47468 * 119.99856 * 19 17 15 22 22 H 1.48504 * 109.46972 * 239.99850 * 19 17 15 23 23 C 1.46847 * 111.19733 * 298.25534 * 10 9 8 24 24 C 1.53040 * 109.52263 * 61.74472 * 23 10 9 25 25 H 1.08999 * 109.47013 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.46832 * 299.99382 * 1 2 3 27 27 H 1.09000 * 109.46959 * 59.99674 * 1 2 3 28 28 H 1.09002 * 109.47190 * 240.00507 * 2 1 3 29 29 H 1.09001 * 109.47530 * 120.00829 * 2 1 3 30 30 H 1.08999 * 109.47028 * 60.00637 * 3 2 1 31 31 H 1.08991 * 109.47381 * 300.00038 * 3 2 1 32 32 H 0.97006 * 119.99403 * 0.02562 * 6 4 3 33 33 H 1.09002 * 109.57572 * 325.16130 * 7 6 4 34 34 H 1.09006 * 109.50101 * 62.49886 * 8 7 6 35 35 H 1.09006 * 109.50631 * 302.38818 * 8 7 6 36 36 H 1.09002 * 109.46215 * 179.19652 * 9 8 7 37 37 H 1.08998 * 109.46458 * 299.16206 * 9 8 7 38 38 H 1.08991 * 109.47797 * 179.97438 * 13 11 10 39 39 H 1.09004 * 109.46902 * 299.99868 * 13 11 10 40 40 H 1.09009 * 109.47188 * 59.99652 * 13 11 10 41 41 H 1.08997 * 109.47469 * 183.87149 * 14 11 10 42 42 H 1.09008 * 109.47348 * 303.87404 * 14 11 10 43 43 H 0.96998 * 120.00001 * 179.97438 * 18 17 15 44 44 H 1.08999 * 109.45883 * 181.75632 * 23 10 9 45 45 H 1.09000 * 109.46278 * 301.72878 * 23 10 9 46 46 H 1.09002 * 109.50259 * 60.75906 * 24 23 10 47 47 H 1.08998 * 109.49958 * 180.88001 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1535 0.3922 0.0006 6 7 4.2210 2.6097 0.0013 7 6 5.6859 2.6097 0.0013 8 6 6.1976 3.9173 0.6118 9 6 7.7267 3.9378 0.5536 10 7 8.1661 3.8239 -0.8430 11 6 9.6230 3.9790 -0.9507 12 1 9.9355 4.8665 -0.4005 13 6 10.3120 2.7458 -0.3633 14 6 10.0125 4.1281 -2.4228 15 6 9.4107 5.3942 -2.9760 16 1 8.8109 6.0293 -2.3410 17 6 9.6268 5.7424 -4.2925 18 7 10.3577 4.9693 -5.0656 19 14 8.8815 7.3121 -4.9778 20 1 8.1076 7.9988 -3.9126 21 1 9.9656 8.2065 -5.4575 22 1 7.9783 6.9786 -6.1085 23 6 7.7267 2.5544 -1.4360 24 6 6.1976 2.4926 -1.4371 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5140 0.8899 30 1 1.6767 1.9562 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.7359 3.4497 0.0017 33 1 6.0511 1.7665 0.5876 34 1 5.8720 3.9862 1.6498 35 1 5.8005 4.7619 0.0486 36 1 8.0937 4.8739 0.9746 37 1 8.1234 3.1011 1.1286 38 1 11.3929 2.8606 -0.4436 39 1 10.0345 2.6396 0.6855 40 1 9.9994 1.8582 -0.9135 41 1 11.0981 4.1741 -2.5086 42 1 9.6395 3.2724 -2.9858 43 1 10.5094 5.2140 -5.9918 44 1 8.0937 2.4858 -2.4601 45 1 8.1234 1.7241 -0.8517 46 1 5.8006 3.3148 -2.0326 47 1 5.8721 1.5436 -1.8631 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592998476.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:20 Heat of formation + Delta-G solvation = -60.964554 kcal Electronic energy + Delta-G solvation = -23017.993148 eV Core-core repulsion = 19813.515412 eV Total energy + Delta-G solvation = -3204.477737 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.07420 -38.66984 -35.73199 -34.49324 -33.23030 -32.00792 -30.55886 -29.36570 -27.78201 -27.24668 -23.95688 -23.08207 -22.76283 -21.77265 -20.37922 -19.94141 -18.68005 -17.03990 -16.32871 -16.15212 -15.96545 -15.27572 -14.58724 -14.42492 -14.35135 -14.09681 -13.67205 -13.51240 -13.31073 -13.17129 -12.67919 -12.25376 -12.13426 -12.04064 -11.84949 -11.71924 -11.52499 -11.41032 -11.19768 -11.10094 -10.97773 -10.86281 -10.56357 -10.43415 -10.35745 -10.28193 -9.90784 -9.71979 -9.17024 -8.99709 -8.88610 -8.24802 -7.45275 -5.87504 -3.85005 2.62564 3.15521 3.37962 3.45491 3.50308 4.52260 4.57704 4.57972 4.66562 4.76134 4.90528 5.10781 5.20082 5.24695 5.30429 5.36992 5.48860 5.49477 5.54107 5.63990 5.74693 5.77829 5.81542 5.85460 5.91173 5.94718 6.00752 6.05268 6.08042 6.12770 6.21820 6.30186 6.41236 6.54057 6.61200 6.69218 6.76298 7.01013 7.48869 7.56688 7.70421 7.93459 8.04377 8.14117 8.22342 8.60023 9.21204 9.76446 11.24641 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019018 B = 0.003715 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.959840 B = 7534.630202 C = 8283.278784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.141 4.141 4 C 0.509 3.491 5 O -0.543 6.543 6 N -0.726 5.726 7 C 0.144 3.856 8 C -0.120 4.120 9 C 0.057 3.943 10 N -0.510 5.510 11 C 0.087 3.913 12 H 0.069 0.931 13 C -0.184 4.184 14 C 0.029 3.971 15 C -0.487 4.487 16 H 0.061 0.939 17 C 0.049 3.951 18 N -0.904 5.904 19 Si 0.889 3.111 20 H -0.274 1.274 21 H -0.288 1.288 22 H -0.287 1.287 23 C 0.060 3.940 24 C -0.123 4.123 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.399 0.601 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.026 0.974 38 H 0.055 0.945 39 H 0.039 0.961 40 H 0.053 0.947 41 H 0.018 0.982 42 H 0.019 0.981 43 H 0.256 0.744 44 H 0.090 0.910 45 H 0.026 0.974 46 H 0.074 0.926 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.656 -5.454 12.615 20.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.182 4.182 4 C 0.296 3.704 5 O -0.420 6.420 6 N -0.377 5.377 7 C 0.040 3.960 8 C -0.158 4.158 9 C -0.072 4.072 10 N -0.234 5.234 11 C -0.021 4.021 12 H 0.087 0.913 13 C -0.243 4.243 14 C -0.008 4.008 15 C -0.525 4.525 16 H 0.079 0.921 17 C -0.150 4.150 18 N -0.545 5.545 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.215 1.215 22 H -0.214 1.214 23 C -0.069 4.069 24 C -0.161 4.161 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.233 0.767 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.044 0.956 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.036 0.964 42 H 0.037 0.963 43 H 0.066 0.934 44 H 0.108 0.892 45 H 0.044 0.956 46 H 0.092 0.908 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.375 -5.837 12.184 20.467 hybrid contribution -0.208 0.675 -0.090 0.712 sum -15.583 -5.162 12.094 20.390 Atomic orbital electron populations 1.21796 0.95591 1.01904 1.01724 1.21274 0.95119 0.94798 1.03579 1.21728 0.92043 1.00127 1.04256 1.20758 0.90231 0.83763 0.75664 1.90703 1.70546 1.31347 1.49403 1.46188 1.07632 1.08506 1.75340 1.21088 0.78558 0.98737 0.97597 1.21841 0.96712 0.97127 1.00160 1.21992 0.93653 1.00543 0.91048 1.62078 1.13775 1.33281 1.14264 1.21904 0.84388 0.95005 1.00753 0.91283 1.22529 1.01492 1.00838 0.99485 1.19209 0.96178 0.97600 0.87815 1.21199 1.29758 1.06321 0.95264 0.92099 1.25014 0.95763 0.96852 0.97379 1.69974 1.40086 1.37819 1.06634 0.86585 0.78881 0.83888 0.78898 1.19820 1.21450 1.21385 1.22026 0.93557 0.89965 1.01320 1.21949 0.96320 1.02154 0.95726 0.92463 0.92768 0.92665 0.91193 0.91336 0.89127 0.88934 0.76743 0.90115 0.91795 0.90449 0.90792 0.95580 0.92551 0.94204 0.92778 0.96362 0.96286 0.93406 0.89164 0.95641 0.90768 0.91837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.64 16 2 C -0.11 -0.96 5.22 -26.73 -0.14 -1.10 16 3 C -0.14 -1.16 5.70 -27.88 -0.16 -1.31 16 4 C 0.51 6.18 7.80 -10.98 -0.09 6.09 16 5 O -0.54 -8.90 15.65 5.55 0.09 -8.81 16 6 N -0.73 -8.02 5.08 -53.69 -0.27 -8.30 16 7 C 0.14 1.94 2.52 -67.81 -0.17 1.77 16 8 C -0.12 -1.50 5.57 -26.65 -0.15 -1.65 16 9 C 0.06 0.84 5.15 -3.83 -0.02 0.82 16 10 N -0.51 -9.44 4.28 -226.69 -0.97 -10.41 16 11 C 0.09 1.76 2.26 -67.71 -0.15 1.60 16 12 H 0.07 1.40 7.97 -51.93 -0.41 0.99 16 13 C -0.18 -3.20 8.43 37.15 0.31 -2.89 16 14 C 0.03 0.73 4.37 -27.88 -0.12 0.61 16 15 C -0.49 -13.50 8.81 -34.44 -0.30 -13.81 16 16 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 17 C 0.05 1.41 5.46 -17.82 -0.10 1.31 16 18 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 19 Si 0.89 21.94 29.54 -169.99 -5.02 16.91 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 C 0.06 1.07 4.52 -3.83 -0.02 1.06 16 24 C -0.12 -1.94 5.67 -26.65 -0.15 -2.09 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 29 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.40 3.28 8.61 -40.82 -0.35 2.93 16 33 H 0.08 1.23 7.58 -51.93 -0.39 0.83 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 1.07 8.00 -51.93 -0.42 0.65 16 37 H 0.03 0.38 6.91 -51.93 -0.36 0.02 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.04 0.61 6.85 -51.93 -0.36 0.26 16 40 H 0.05 0.95 6.45 -51.92 -0.34 0.61 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.02 0.51 6.30 -51.92 -0.33 0.18 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.09 1.87 6.18 -51.93 -0.32 1.55 16 45 H 0.03 0.44 6.57 -51.93 -0.34 0.10 16 46 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 47 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 363.79 15.07 5.48 5.48 Total: -1.00 -32.06 363.79 -9.49 -41.55 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -8.65 Total: 0.33 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -0.89 Total: -10.23 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: -0.51 Total: -45.23 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.09 Total: -8.81 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.06 -9.49 -41.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592998476.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.416 kcal (2) G-P(sol) polarization free energy of solvation -32.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds