Wall clock time and date at job start Tue Mar 31 2020 06:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47169 * 2 1 4 4 N 1.46496 * 109.47231 * 180.02562 * 3 2 1 5 5 C 1.34778 * 120.00033 * 180.02562 * 4 3 2 6 6 O 1.21274 * 120.00146 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.99859 * 180.02562 * 5 4 3 8 8 C 1.53000 * 109.47412 * 179.97438 * 7 5 4 9 9 C 1.52995 * 109.47536 * 179.97438 * 8 7 5 10 10 N 1.46502 * 109.47319 * 179.97438 * 9 8 7 11 11 C 1.36934 * 120.00185 * 270.00429 * 10 9 8 12 12 H 1.08010 * 119.99752 * 141.59457 * 11 10 9 13 13 C 1.38806 * 120.00099 * 321.59637 * 11 10 9 14 14 N 1.31619 * 120.00191 * 339.26715 * 13 11 10 15 15 Si 1.86804 * 119.99928 * 159.26509 * 13 11 10 16 16 H 1.48496 * 109.47253 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46880 * 120.00098 * 15 13 11 18 18 H 1.48504 * 109.46924 * 239.99813 * 15 13 11 19 19 C 1.46503 * 119.99486 * 89.99804 * 10 9 8 20 20 C 1.54267 * 110.03404 * 242.54933 * 19 10 9 21 21 C 1.54964 * 104.16155 * 217.14345 * 20 19 10 22 22 C 1.54891 * 102.78000 * 37.88701 * 21 20 19 23 23 C 1.53885 * 110.02857 * 125.33706 * 19 10 9 24 24 H 1.09000 * 109.46979 * 59.99616 * 1 2 3 25 25 H 1.08996 * 109.46848 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46796 * 299.99624 * 1 2 3 27 27 H 1.09000 * 109.46796 * 240.00376 * 2 1 3 28 28 H 1.09000 * 109.46979 * 120.00384 * 2 1 3 29 29 H 1.09000 * 109.46954 * 60.00473 * 3 2 1 30 30 H 1.09004 * 109.47235 * 300.00499 * 3 2 1 31 31 H 0.97001 * 119.99995 * 0.02562 * 4 3 2 32 32 H 1.09002 * 109.47691 * 59.99960 * 7 5 4 33 33 H 1.09004 * 109.47173 * 299.99933 * 7 5 4 34 34 H 1.09002 * 109.46603 * 59.99444 * 8 7 5 35 35 H 1.09004 * 109.47019 * 300.00177 * 8 7 5 36 36 H 1.09000 * 109.46828 * 60.00301 * 9 8 7 37 37 H 1.08998 * 109.47552 * 299.99890 * 9 8 7 38 38 H 0.96997 * 120.00528 * 175.03239 * 14 13 11 39 39 H 1.08997 * 110.02248 * 3.94701 * 19 10 9 40 40 H 1.08998 * 110.48761 * 335.78596 * 20 19 10 41 41 H 1.09000 * 110.48226 * 98.42973 * 20 19 10 42 42 H 1.09006 * 110.71654 * 279.57657 * 21 20 19 43 43 H 1.09000 * 110.92813 * 156.30019 * 21 20 19 44 44 H 1.09000 * 110.48504 * 203.40685 * 22 21 20 45 45 H 1.08996 * 110.59748 * 80.81662 * 22 21 20 46 46 H 1.08996 * 110.02864 * 238.57449 * 23 19 10 47 47 H 1.09001 * 110.02882 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1789 2.6097 -0.0002 6 8 3.5725 3.6600 0.0002 7 6 5.6859 2.6097 -0.0014 8 6 6.1960 4.0521 -0.0013 9 6 7.7259 4.0521 -0.0019 10 7 8.2143 5.4333 -0.0024 11 6 8.4420 6.0787 -1.1885 12 1 8.1958 7.1254 -1.2897 13 6 8.9893 5.3876 -2.2607 14 7 9.6573 4.2726 -2.0531 15 14 8.7777 6.0399 -3.9983 16 1 7.9932 7.3002 -3.9618 17 1 10.1121 6.3051 -4.5934 18 1 8.0601 5.0331 -4.8210 19 6 8.4589 6.1242 1.2662 20 6 7.5274 7.3476 1.3899 21 6 8.4016 8.4209 2.0864 22 6 9.7949 8.1944 1.4487 23 6 9.9001 6.6622 1.3039 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6768 1.9562 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.9900 0.6024 -0.0013 32 1 6.0486 2.0966 -0.8921 33 1 6.0499 2.0951 0.8879 34 1 5.8333 4.5656 0.8892 35 1 5.8319 4.5663 -0.8908 36 1 8.0889 3.5385 -0.8922 37 1 8.0897 3.5381 0.8878 38 1 9.9777 3.7518 -2.8061 39 1 8.2929 5.4425 2.1004 40 1 7.2157 7.6911 0.4036 41 1 6.6590 7.1053 2.0026 42 1 8.4370 8.2505 3.1625 43 1 8.0350 9.4237 1.8674 44 1 10.5802 8.5705 2.1045 45 1 9.8523 8.6747 0.4720 46 1 10.4332 6.2422 2.1569 47 1 10.4176 6.4089 0.3786 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593959839.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:57 Heat of formation + Delta-G solvation = -52.151368 kcal Electronic energy + Delta-G solvation = -22725.791342 eV Core-core repulsion = 19521.695774 eV Total energy + Delta-G solvation = -3204.095568 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.47092 -37.67027 -35.88626 -34.70149 -32.78377 -32.24028 -30.65346 -27.74637 -27.45080 -26.35931 -25.37566 -22.96590 -21.81488 -20.64166 -19.94752 -19.64805 -18.94041 -16.83798 -15.98997 -15.96121 -15.91762 -15.29215 -14.95443 -14.63083 -14.16016 -13.79580 -13.44310 -13.18083 -12.89629 -12.85893 -12.50231 -12.40291 -12.32852 -11.88772 -11.40140 -11.30833 -11.17043 -11.10044 -10.80610 -10.79306 -10.46356 -10.36174 -10.32302 -10.16942 -10.07394 -10.02378 -9.64055 -9.50625 -9.42505 -9.32789 -8.99117 -8.36567 -6.46799 -5.66383 -3.29746 2.94569 3.32081 3.40405 3.49377 3.53379 4.55849 4.60499 4.70452 4.93921 5.14440 5.31907 5.36572 5.37811 5.40971 5.52116 5.54059 5.56815 5.66276 5.70431 5.74143 5.87148 5.90868 5.94504 6.24144 6.27456 6.33151 6.37966 6.50218 6.50750 6.51866 6.63984 6.68172 6.72413 6.84770 6.91192 6.99192 7.11796 7.26226 7.36780 7.49212 7.62808 7.77915 7.92769 8.47754 8.62660 9.30070 9.92531 10.51200 11.28637 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015723 B = 0.003969 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.439249 B = 7052.524730 C = 8166.200545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.136 4.136 3 C 0.117 3.883 4 N -0.742 5.742 5 C 0.511 3.489 6 O -0.537 6.537 7 C -0.136 4.136 8 C -0.117 4.117 9 C 0.147 3.853 10 N -0.578 5.578 11 C -0.240 4.240 12 H 0.059 0.941 13 C 0.010 3.990 14 N -0.887 5.887 15 Si 0.887 3.113 16 H -0.276 1.276 17 H -0.291 1.291 18 H -0.290 1.290 19 C 0.171 3.829 20 C -0.135 4.135 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.131 4.131 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.399 0.601 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.092 0.908 37 H 0.020 0.980 38 H 0.250 0.750 39 H 0.046 0.954 40 H 0.073 0.927 41 H 0.046 0.954 42 H 0.053 0.947 43 H 0.051 0.949 44 H 0.046 0.954 45 H 0.061 0.939 46 H 0.039 0.961 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.210 -7.565 6.341 14.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.173 4.173 3 C -0.007 4.007 4 N -0.396 5.396 5 C 0.299 3.701 6 O -0.413 6.413 7 C -0.176 4.176 8 C -0.158 4.158 9 C 0.021 3.979 10 N -0.297 5.297 11 C -0.370 4.370 12 H 0.077 0.923 13 C -0.189 4.189 14 N -0.531 5.531 15 Si 0.717 3.283 16 H -0.201 1.201 17 H -0.218 1.218 18 H -0.216 1.216 19 C 0.064 3.936 20 C -0.175 4.175 21 C -0.161 4.161 22 C -0.155 4.155 23 C -0.170 4.170 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.232 0.768 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.109 0.891 37 H 0.039 0.961 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.091 0.909 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.058 0.942 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.495 -6.864 6.229 14.002 hybrid contribution 0.013 -0.250 -0.974 1.006 sum -10.483 -7.113 5.255 13.715 Atomic orbital electron populations 1.21682 0.94744 1.01977 1.02336 1.21735 0.96841 0.96126 1.02642 1.21334 0.80446 0.96703 1.02198 1.46152 1.06927 1.09093 1.77395 1.21196 0.91086 0.83046 0.74805 1.90684 1.70714 1.31392 1.48536 1.21713 0.89842 1.02433 1.03641 1.22024 0.99954 0.91594 1.02222 1.20918 0.88736 0.87089 1.01174 1.43899 1.73947 1.11264 1.00553 1.18947 1.33577 0.95627 0.88812 0.92296 1.25103 0.96421 0.98474 0.98898 1.70082 1.36237 1.17097 1.29646 0.86474 0.77350 0.78720 0.85769 1.20135 1.21836 1.21628 1.21038 0.91719 0.92187 0.88680 1.22862 0.97608 0.96715 1.00303 1.22443 0.96527 0.98386 0.98741 1.22251 0.95812 0.97708 0.99738 1.22547 0.99122 0.93692 1.01640 0.92359 0.92306 0.92396 0.91339 0.91383 0.91832 0.91797 0.76755 0.89147 0.89661 0.93264 0.91694 0.89067 0.96131 0.93967 0.93611 0.90860 0.93542 0.92790 0.93014 0.93539 0.92040 0.94241 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.14 -1.00 6.05 -26.73 -0.16 -1.17 16 3 C 0.12 1.26 5.67 -4.05 -0.02 1.24 16 4 N -0.74 -8.79 5.56 -60.30 -0.33 -9.12 16 5 C 0.51 8.25 7.83 -10.99 -0.09 8.16 16 6 O -0.54 -11.01 15.98 5.56 0.09 -10.92 16 7 C -0.14 -2.14 5.70 -27.88 -0.16 -2.30 16 8 C -0.12 -2.39 4.83 -26.73 -0.13 -2.52 16 9 C 0.15 3.33 5.28 -4.04 -0.02 3.31 16 10 N -0.58 -14.02 2.38 -164.39 -0.39 -14.41 16 11 C -0.24 -6.38 7.75 -15.06 -0.12 -6.50 16 12 H 0.06 1.61 6.94 -52.48 -0.36 1.25 16 13 C 0.01 0.28 4.96 -17.43 -0.09 0.20 16 14 N -0.89 -24.82 11.48 55.49 0.64 -24.18 16 15 Si 0.89 21.62 29.61 -169.99 -5.03 16.59 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 C 0.17 3.65 3.42 -66.81 -0.23 3.42 16 20 C -0.14 -2.65 6.43 -25.03 -0.16 -2.81 16 21 C -0.12 -2.07 6.91 -24.70 -0.17 -2.24 16 22 C -0.12 -2.10 6.83 -25.07 -0.17 -2.27 16 23 C -0.13 -2.69 6.25 -25.61 -0.16 -2.85 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.40 3.50 8.47 -40.82 -0.35 3.16 16 32 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.05 1.03 8.10 -51.93 -0.42 0.61 16 35 H 0.06 1.51 8.10 -51.93 -0.42 1.09 16 36 H 0.09 2.31 5.55 -51.93 -0.29 2.02 16 37 H 0.02 0.44 7.91 -51.93 -0.41 0.03 16 38 H 0.25 6.79 8.32 -40.82 -0.34 6.45 16 39 H 0.05 0.94 7.81 -51.93 -0.41 0.53 16 40 H 0.07 1.60 6.64 -51.93 -0.34 1.25 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.09 2.08 7.17 -51.93 -0.37 1.71 16 LS Contribution 371.28 15.07 5.60 5.60 Total: -1.00 -30.65 371.28 -9.59 -40.24 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -8.85 Total: 3.15 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -1.31 Total: -6.93 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: -0.09 Total: -47.72 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.65 -9.59 -40.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593959839.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.909 kcal (2) G-P(sol) polarization free energy of solvation -30.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds