Wall clock time and date at job start Tue Mar 31 2020 06:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47169 * 2 1 4 4 N 1.46496 * 109.47231 * 180.02562 * 3 2 1 5 5 C 1.34778 * 120.00033 * 180.02562 * 4 3 2 6 6 O 1.21274 * 120.00146 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.99859 * 180.02562 * 5 4 3 8 8 C 1.53000 * 109.47412 * 179.97438 * 7 5 4 9 9 C 1.52995 * 109.47536 * 179.97438 * 8 7 5 10 10 N 1.46502 * 109.47319 * 179.97438 * 9 8 7 11 11 C 1.36934 * 120.00185 * 270.00429 * 10 9 8 12 12 H 1.08010 * 119.99752 * 141.59457 * 11 10 9 13 13 C 1.38806 * 120.00099 * 321.59637 * 11 10 9 14 14 N 1.31619 * 120.00191 * 339.26715 * 13 11 10 15 15 Si 1.86804 * 119.99928 * 159.26509 * 13 11 10 16 16 H 1.48496 * 109.47253 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46880 * 120.00098 * 15 13 11 18 18 H 1.48504 * 109.46924 * 239.99813 * 15 13 11 19 19 C 1.46503 * 119.99486 * 89.99804 * 10 9 8 20 20 C 1.54267 * 110.03404 * 242.54933 * 19 10 9 21 21 C 1.54964 * 104.16155 * 217.14345 * 20 19 10 22 22 C 1.54891 * 102.78000 * 37.88701 * 21 20 19 23 23 C 1.53885 * 110.02857 * 125.33706 * 19 10 9 24 24 H 1.09000 * 109.46979 * 59.99616 * 1 2 3 25 25 H 1.08996 * 109.46848 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46796 * 299.99624 * 1 2 3 27 27 H 1.09000 * 109.46796 * 240.00376 * 2 1 3 28 28 H 1.09000 * 109.46979 * 120.00384 * 2 1 3 29 29 H 1.09000 * 109.46954 * 60.00473 * 3 2 1 30 30 H 1.09004 * 109.47235 * 300.00499 * 3 2 1 31 31 H 0.97001 * 119.99995 * 0.02562 * 4 3 2 32 32 H 1.09002 * 109.47691 * 59.99960 * 7 5 4 33 33 H 1.09004 * 109.47173 * 299.99933 * 7 5 4 34 34 H 1.09002 * 109.46603 * 59.99444 * 8 7 5 35 35 H 1.09004 * 109.47019 * 300.00177 * 8 7 5 36 36 H 1.09000 * 109.46828 * 60.00301 * 9 8 7 37 37 H 1.08998 * 109.47552 * 299.99890 * 9 8 7 38 38 H 0.96997 * 120.00528 * 175.03239 * 14 13 11 39 39 H 1.08997 * 110.02248 * 3.94701 * 19 10 9 40 40 H 1.08998 * 110.48761 * 335.78596 * 20 19 10 41 41 H 1.09000 * 110.48226 * 98.42973 * 20 19 10 42 42 H 1.09006 * 110.71654 * 279.57657 * 21 20 19 43 43 H 1.09000 * 110.92813 * 156.30019 * 21 20 19 44 44 H 1.09000 * 110.48504 * 203.40685 * 22 21 20 45 45 H 1.08996 * 110.59748 * 80.81662 * 22 21 20 46 46 H 1.08996 * 110.02864 * 238.57449 * 23 19 10 47 47 H 1.09001 * 110.02882 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1789 2.6097 -0.0002 6 8 3.5725 3.6600 0.0002 7 6 5.6859 2.6097 -0.0014 8 6 6.1960 4.0521 -0.0013 9 6 7.7259 4.0521 -0.0019 10 7 8.2143 5.4333 -0.0024 11 6 8.4420 6.0787 -1.1885 12 1 8.1958 7.1254 -1.2897 13 6 8.9893 5.3876 -2.2607 14 7 9.6573 4.2726 -2.0531 15 14 8.7777 6.0399 -3.9983 16 1 7.9932 7.3002 -3.9618 17 1 10.1121 6.3051 -4.5934 18 1 8.0601 5.0331 -4.8210 19 6 8.4589 6.1242 1.2662 20 6 7.5274 7.3476 1.3899 21 6 8.4016 8.4209 2.0864 22 6 9.7949 8.1944 1.4487 23 6 9.9001 6.6622 1.3039 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6768 1.9562 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.9900 0.6024 -0.0013 32 1 6.0486 2.0966 -0.8921 33 1 6.0499 2.0951 0.8879 34 1 5.8333 4.5656 0.8892 35 1 5.8319 4.5663 -0.8908 36 1 8.0889 3.5385 -0.8922 37 1 8.0897 3.5381 0.8878 38 1 9.9777 3.7518 -2.8061 39 1 8.2929 5.4425 2.1004 40 1 7.2157 7.6911 0.4036 41 1 6.6590 7.1053 2.0026 42 1 8.4370 8.2505 3.1625 43 1 8.0350 9.4237 1.8674 44 1 10.5802 8.5705 2.1045 45 1 9.8523 8.6747 0.4720 46 1 10.4332 6.2422 2.1569 47 1 10.4176 6.4089 0.3786 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593959839.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:56 Heat of formation + Delta-G solvation = -69.771235 kcal Electronic energy + Delta-G solvation = -22726.555396 eV Core-core repulsion = 19521.695774 eV Total energy + Delta-G solvation = -3204.859623 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.75099 -39.34220 -36.90200 -36.37066 -34.24033 -33.47473 -32.44003 -29.31222 -28.81709 -28.01119 -26.69796 -24.61492 -22.59605 -22.26027 -21.36171 -21.02794 -20.70944 -18.38113 -17.59620 -17.13943 -17.04222 -16.86320 -16.45142 -16.12036 -15.82868 -15.15703 -14.86130 -14.59599 -14.40928 -14.04289 -13.82637 -13.67164 -13.44090 -13.17925 -12.93967 -12.86211 -12.64831 -12.45703 -12.19011 -12.13499 -12.03319 -11.93024 -11.77218 -11.76023 -11.71535 -11.69127 -11.25421 -11.20938 -11.14134 -10.83382 -10.41236 -10.09544 -8.46521 -7.70085 -5.37340 1.42347 1.47152 1.55868 1.66373 2.25184 2.54983 3.29499 3.66471 3.87480 3.97110 4.00471 4.05765 4.06052 4.23170 4.27407 4.34948 4.45095 4.64935 4.70620 4.72065 4.77426 4.81080 4.82910 4.90911 4.94457 4.95523 5.01409 5.09928 5.13637 5.20189 5.23590 5.23867 5.25781 5.34257 5.35926 5.49563 5.55811 5.62186 5.63749 5.72490 5.81016 5.94071 6.57196 6.58091 7.27633 7.29755 7.98348 8.49710 9.20099 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015723 B = 0.003969 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.439249 B = 7052.524730 C = 8166.200545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.114 3.886 4 N -0.721 5.721 5 C 0.510 3.490 6 O -0.589 6.589 7 C -0.127 4.127 8 C -0.100 4.100 9 C 0.150 3.850 10 N -0.593 5.593 11 C -0.237 4.237 12 H 0.045 0.955 13 C -0.031 4.031 14 N -0.911 5.911 15 Si 0.937 3.063 16 H -0.277 1.277 17 H -0.291 1.291 18 H -0.289 1.289 19 C 0.161 3.839 20 C -0.131 4.131 21 C -0.111 4.111 22 C -0.113 4.113 23 C -0.127 4.127 24 H 0.053 0.947 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.417 0.583 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.039 0.961 35 H 0.026 0.974 36 H 0.066 0.934 37 H 0.034 0.966 38 H 0.248 0.752 39 H 0.056 0.944 40 H 0.042 0.958 41 H 0.055 0.945 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.043 0.957 46 H 0.057 0.943 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.726 -8.507 7.795 15.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.010 4.010 4 N -0.374 5.374 5 C 0.298 3.702 6 O -0.469 6.469 7 C -0.168 4.168 8 C -0.141 4.141 9 C 0.024 3.976 10 N -0.313 5.313 11 C -0.368 4.368 12 H 0.062 0.938 13 C -0.228 4.228 14 N -0.555 5.555 15 Si 0.766 3.234 16 H -0.202 1.202 17 H -0.218 1.218 18 H -0.216 1.216 19 C 0.054 3.946 20 C -0.171 4.171 21 C -0.149 4.149 22 C -0.151 4.151 23 C -0.166 4.166 24 H 0.072 0.928 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.254 0.746 32 H 0.120 0.880 33 H 0.136 0.864 34 H 0.058 0.942 35 H 0.045 0.955 36 H 0.084 0.916 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.062 0.938 46 H 0.076 0.924 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.019 -7.852 7.695 15.565 hybrid contribution 0.148 0.020 -1.372 1.380 sum -10.871 -7.832 6.323 14.816 Atomic orbital electron populations 1.21699 0.94119 1.02885 1.02114 1.21687 0.97258 0.93573 1.03775 1.21460 0.79439 0.99024 1.01046 1.45977 1.07612 1.08647 1.75199 1.21195 0.91176 0.83407 0.74424 1.90668 1.71535 1.33412 1.51327 1.21600 0.89874 0.99539 1.05769 1.21698 0.98216 0.94334 0.99817 1.20858 0.89959 0.86331 1.00457 1.44112 1.74343 1.11841 1.00965 1.18952 1.32594 0.95162 0.90125 0.93780 1.25598 0.96827 0.99044 1.01351 1.70164 1.37333 1.17992 1.30060 0.85691 0.76986 0.78059 0.82635 1.20210 1.21822 1.21610 1.21276 0.92718 0.92912 0.87652 1.22751 0.98124 0.96947 0.99272 1.22404 0.94627 0.98098 0.99741 1.22214 0.97688 0.95433 0.99730 1.22441 0.98124 0.95955 1.00069 0.92799 0.90791 0.92522 0.90389 0.89990 0.92774 0.93320 0.74583 0.88010 0.86409 0.94177 0.95521 0.91569 0.94804 0.94210 0.92543 0.93906 0.92639 0.90182 0.91432 0.90629 0.93795 0.92434 0.94032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 71.98 0.71 -0.99 16 2 C -0.13 -1.56 6.05 30.60 0.19 -1.37 16 3 C 0.11 2.33 5.67 86.38 0.49 2.82 16 4 N -0.72 -15.89 5.56 -463.08 -2.57 -18.46 16 5 C 0.51 16.16 7.83 87.66 0.69 16.85 16 6 O -0.59 -24.61 15.98 -3.01 -0.05 -24.66 16 7 C -0.13 -3.89 5.70 29.85 0.17 -3.72 16 8 C -0.10 -4.14 4.83 30.59 0.15 -4.00 16 9 C 0.15 6.88 5.28 86.38 0.46 7.33 16 10 N -0.59 -29.41 2.38 -674.00 -1.60 -31.01 16 11 C -0.24 -13.05 7.75 84.03 0.65 -12.40 16 12 H 0.04 2.52 6.94 -2.91 -0.02 2.50 16 13 C -0.03 -1.73 4.96 84.86 0.42 -1.31 16 14 N -0.91 -52.10 11.48 21.65 0.25 -51.85 16 15 Si 0.94 45.54 29.61 68.60 2.03 47.57 16 16 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 17 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 18 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 19 C 0.16 6.83 3.42 45.72 0.16 6.98 16 20 C -0.13 -5.07 6.43 31.70 0.20 -4.86 16 21 C -0.11 -3.45 6.91 31.91 0.22 -3.23 16 22 C -0.11 -3.85 6.83 31.67 0.22 -3.64 16 23 C -0.13 -5.14 6.25 31.32 0.20 -4.95 16 24 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.42 6.16 8.47 -92.71 -0.79 5.38 16 32 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 33 H 0.12 2.85 8.14 -2.38 -0.02 2.83 16 34 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 35 H 0.03 1.27 8.10 -2.38 -0.02 1.26 16 36 H 0.07 3.42 5.55 -2.39 -0.01 3.41 16 37 H 0.03 1.43 7.91 -2.39 -0.02 1.41 16 38 H 0.25 13.76 8.32 -92.71 -0.77 12.98 16 39 H 0.06 2.25 7.81 -2.39 -0.02 2.23 16 40 H 0.04 1.90 6.64 -2.39 -0.02 1.88 16 41 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 42 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 43 H 0.07 1.91 8.14 -2.39 -0.02 1.90 16 44 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.04 1.63 8.14 -2.39 -0.02 1.62 16 46 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.04 2.05 7.17 -2.39 -0.02 2.03 16 Total: -1.00 -69.07 371.28 3.10 -65.97 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.13 Total: 18.93 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: 4.91 Total: -6.48 kcal Atomic # 7 Polarization: -97.40 SS G_CDS: -3.93 Total: -101.32 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.05 Total: -24.66 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -69.07 3.10 -65.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593959839.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.802 kcal (2) G-P(sol) polarization free energy of solvation -69.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds