Wall clock time and date at job start Tue Mar 31 2020 06:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46825 * 2 1 4 4 H 1.09001 * 109.46978 * 174.83474 * 3 2 1 5 5 C 1.50700 * 109.47366 * 54.83119 * 3 2 1 6 6 H 1.08000 * 120.00018 * 239.99617 * 5 3 2 7 7 C 1.37875 * 119.99852 * 60.00356 * 5 3 2 8 8 N 1.31510 * 120.00055 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 120.00009 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47100 * 89.99377 * 9 7 5 11 11 H 1.48498 * 109.47181 * 209.99617 * 9 7 5 12 12 H 1.48503 * 109.46660 * 329.99532 * 9 7 5 13 13 N 1.46906 * 109.47185 * 294.82981 * 3 2 1 14 14 C 1.46893 * 110.99981 * 273.76901 * 13 3 2 15 15 C 1.50702 * 109.47296 * 185.41980 * 14 13 3 16 16 O 1.21284 * 119.99567 * 359.97438 * 15 14 13 17 17 N 1.34770 * 120.00318 * 179.97438 * 15 14 13 18 18 C 1.46500 * 119.99986 * 179.97438 * 17 15 14 19 19 C 1.53007 * 109.47273 * 275.00194 * 18 17 15 20 20 C 1.53011 * 109.46726 * 300.00122 * 19 18 17 21 21 C 1.52996 * 109.47028 * 299.99643 * 20 19 18 22 22 C 1.52999 * 109.47204 * 180.02562 * 21 20 19 23 23 C 1.53006 * 109.47297 * 60.00256 * 21 20 19 24 24 C 1.52999 * 109.46919 * 300.00083 * 23 21 20 25 25 H 1.09002 * 109.47122 * 177.99458 * 1 2 3 26 26 H 1.09000 * 109.47176 * 297.98664 * 1 2 3 27 27 H 1.08994 * 109.47828 * 57.98801 * 1 2 3 28 28 H 1.08991 * 109.46843 * 239.99955 * 2 1 3 29 29 H 1.09000 * 109.46903 * 119.99569 * 2 1 3 30 30 H 0.97007 * 119.99780 * 180.02562 * 8 7 5 31 31 H 1.00905 * 110.99444 * 37.72011 * 13 3 2 32 32 H 1.09006 * 109.47203 * 305.41446 * 14 13 3 33 33 H 1.08997 * 109.47325 * 65.41735 * 14 13 3 34 34 H 0.96997 * 120.00344 * 359.97438 * 17 15 14 35 35 H 1.09000 * 109.47286 * 34.99985 * 18 17 15 36 36 H 1.09000 * 109.46964 * 59.99561 * 19 18 17 37 37 H 1.08997 * 109.47530 * 180.02562 * 19 18 17 38 38 H 1.08995 * 109.46906 * 179.97438 * 20 19 18 39 39 H 1.08997 * 109.46962 * 59.99841 * 20 19 18 40 40 H 1.08997 * 109.47132 * 300.00397 * 21 20 19 41 41 H 1.09007 * 109.47265 * 300.00279 * 22 21 20 42 42 H 1.08995 * 109.46953 * 60.00080 * 22 21 20 43 43 H 1.08995 * 109.47392 * 180.02562 * 22 21 20 44 44 H 1.08995 * 109.47358 * 179.97438 * 23 21 20 45 45 H 1.08997 * 109.47162 * 59.99516 * 23 21 20 46 46 H 1.08997 * 109.47266 * 299.99709 * 24 23 21 47 47 H 1.09008 * 109.47208 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1260 1.4439 0.0925 5 6 1.4358 2.1889 1.1614 6 1 0.8267 3.0628 0.9836 7 6 1.6608 1.7562 2.4510 8 7 2.4022 0.6918 2.6675 9 14 0.9114 2.6810 3.8907 10 1 -0.4269 2.1161 4.1992 11 1 1.7919 2.5450 5.0788 12 1 0.7734 4.1170 3.5386 13 7 1.6548 2.0980 -1.2570 14 6 2.6474 1.8431 -2.3093 15 6 2.2901 2.6364 -3.5398 16 8 1.3051 3.3440 -3.5402 17 7 3.0650 2.5594 -4.6398 18 6 2.7172 3.3302 -5.8362 19 6 1.7056 2.5444 -6.6729 20 6 2.3184 1.2055 -7.0890 21 6 3.5795 1.4574 -7.9178 22 6 4.1919 0.1187 -8.3343 23 6 4.5912 2.2433 -7.0811 24 6 3.9784 3.5820 -6.6650 25 1 -0.3633 -1.0271 -0.0360 26 1 -0.3633 0.4822 0.9075 27 1 -0.3634 0.5447 -0.8713 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.5602 0.3871 3.5748 31 1 0.7343 1.8061 -1.5498 32 1 3.6347 2.1430 -1.9579 33 1 2.6553 0.7805 -2.5517 34 1 3.8530 1.9938 -4.6394 35 1 2.2807 4.2839 -5.5398 36 1 0.8071 2.3648 -6.0824 37 1 1.4471 3.1175 -7.5633 38 1 1.5976 0.6455 -7.6846 39 1 2.5771 0.6321 -6.1988 40 1 3.3207 2.0309 -8.8079 41 1 4.4506 -0.4552 -7.4444 42 1 3.4711 -0.4407 -8.9305 43 1 5.0906 0.2981 -8.9244 44 1 5.4898 2.4224 -7.6714 45 1 4.8499 1.6699 -6.1910 46 1 3.7196 4.1555 -7.5551 47 1 4.6989 4.1418 -6.0686 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594011660.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:06 Heat of formation + Delta-G solvation = -65.046119 kcal Electronic energy + Delta-G solvation = -23059.254434 eV Core-core repulsion = 19854.599708 eV Total energy + Delta-G solvation = -3204.654726 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.13736 -38.23294 -36.19872 -34.22278 -32.52970 -31.34663 -31.01631 -30.45311 -27.25949 -26.27345 -24.70336 -23.17815 -22.87146 -21.41379 -20.68046 -19.28331 -19.11147 -17.19259 -15.91734 -15.89538 -15.53444 -15.08637 -14.64341 -14.50581 -14.39459 -13.97631 -13.65539 -13.36991 -13.25357 -12.87044 -12.64247 -12.44707 -12.30238 -12.12914 -11.89188 -11.76211 -11.66654 -11.50229 -11.33318 -10.91218 -10.72564 -10.70639 -10.50661 -10.39356 -10.22289 -10.00856 -9.84547 -9.55165 -9.38794 -8.91727 -8.84939 -8.31734 -7.18728 -5.94930 -3.95547 3.07274 3.36019 3.37411 3.42467 3.48898 4.45398 4.47445 4.49068 4.52504 4.86028 4.99518 5.10680 5.19564 5.28960 5.33286 5.34324 5.37055 5.41113 5.44415 5.51305 5.58611 5.75256 5.80913 5.88163 5.88564 5.90621 5.92771 6.03112 6.08018 6.19517 6.23549 6.35243 6.40033 6.57928 6.69763 6.90474 7.23511 7.27344 7.51381 7.69093 7.74839 7.93680 8.29001 8.55022 8.60290 8.68087 9.11171 9.68096 11.12315 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030231 B = 0.003302 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.971845 B = 8477.045357 C = 8719.403863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.146 4.146 3 C 0.216 3.784 4 H 0.033 0.967 5 C -0.486 4.486 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.667 5.667 14 C 0.043 3.957 15 C 0.513 3.487 16 O -0.524 6.524 17 N -0.733 5.733 18 C 0.147 3.853 19 C -0.131 4.131 20 C -0.113 4.113 21 C -0.092 4.092 22 C -0.148 4.148 23 C -0.115 4.115 24 C -0.127 4.127 25 H 0.022 0.978 26 H 0.066 0.934 27 H 0.031 0.969 28 H 0.009 0.991 29 H 0.094 0.906 30 H 0.259 0.741 31 H 0.335 0.665 32 H 0.093 0.907 33 H 0.044 0.956 34 H 0.395 0.605 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.075 0.925 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.003 -0.723 -21.280 21.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.185 4.185 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.525 4.525 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.538 5.538 9 Si 0.722 3.278 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.299 5.299 14 C -0.091 4.091 15 C 0.299 3.701 16 O -0.399 6.399 17 N -0.388 5.388 18 C 0.042 3.958 19 C -0.169 4.169 20 C -0.150 4.150 21 C -0.111 4.111 22 C -0.206 4.206 23 C -0.153 4.153 24 C -0.165 4.165 25 H 0.041 0.959 26 H 0.085 0.915 27 H 0.050 0.950 28 H 0.028 0.972 29 H 0.112 0.888 30 H 0.068 0.932 31 H 0.155 0.845 32 H 0.111 0.889 33 H 0.062 0.938 34 H 0.230 0.770 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.093 0.907 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.608 0.318 -20.926 21.430 hybrid contribution -0.106 -0.890 0.589 1.073 sum 4.502 -0.572 -20.337 20.837 Atomic orbital electron populations 1.21572 0.97588 0.97989 1.01473 1.22127 0.95163 1.01035 1.00215 1.19263 0.95971 0.88600 0.85326 0.94899 1.21082 1.30369 1.11518 0.89524 0.91850 1.24902 0.95569 0.95215 0.98709 1.69878 1.39201 1.24094 1.20660 0.86553 0.78879 0.80446 0.81898 1.20854 1.21472 1.19854 1.60546 1.03476 1.63364 1.02560 1.21790 0.99563 0.96535 0.91189 1.21083 0.82856 0.82140 0.83989 1.90665 1.26785 1.39398 1.83013 1.46179 1.30211 1.49265 1.13182 1.20825 0.94761 0.95489 0.84723 1.21918 0.98882 0.96513 0.99604 1.21557 0.96436 0.97358 0.99685 1.21153 0.95353 0.96293 0.98268 1.21837 1.00479 0.96959 1.01275 1.21600 0.98035 0.95912 0.99760 1.21820 0.96961 0.97701 0.99987 0.95868 0.91498 0.95017 0.97201 0.88765 0.93167 0.84510 0.88935 0.93790 0.76983 0.89633 0.91287 0.91462 0.92231 0.91768 0.91319 0.92620 0.92800 0.92845 0.91768 0.91950 0.90676 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.39 37.16 0.35 -2.45 16 2 C -0.15 -3.39 5.51 -26.73 -0.15 -3.54 16 3 C 0.22 5.35 2.33 -68.86 -0.16 5.18 16 4 H 0.03 0.88 7.69 -51.93 -0.40 0.48 16 5 C -0.49 -13.39 7.38 -34.44 -0.25 -13.65 16 6 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 7 C 0.06 1.55 5.26 -17.82 -0.09 1.45 16 8 N -0.90 -25.28 11.38 55.43 0.63 -24.65 16 9 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.67 -14.78 5.77 -109.22 -0.63 -15.41 16 14 C 0.04 0.75 5.99 -4.98 -0.03 0.72 16 15 C 0.51 8.55 7.85 -10.99 -0.09 8.46 16 16 O -0.52 -10.82 15.98 5.55 0.09 -10.73 16 17 N -0.73 -8.88 4.23 -53.80 -0.23 -9.11 16 18 C 0.15 1.60 2.78 -67.93 -0.19 1.41 16 19 C -0.13 -1.35 5.60 -26.72 -0.15 -1.50 16 20 C -0.11 -1.01 5.05 -26.73 -0.13 -1.14 16 21 C -0.09 -0.68 2.72 -90.62 -0.25 -0.92 16 22 C -0.15 -1.01 9.19 37.16 0.34 -0.66 16 23 C -0.12 -0.83 5.03 -26.73 -0.13 -0.96 16 24 C -0.13 -1.02 5.61 -26.73 -0.15 -1.17 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 1.60 7.12 -51.93 -0.37 1.23 16 27 H 0.03 0.64 6.36 -51.93 -0.33 0.31 16 28 H 0.01 0.20 7.53 -51.93 -0.39 -0.19 16 29 H 0.09 2.45 6.22 -51.93 -0.32 2.12 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.34 7.46 6.42 -39.29 -0.25 7.20 16 32 H 0.09 1.57 7.92 -51.93 -0.41 1.16 16 33 H 0.04 0.72 7.56 -51.93 -0.39 0.32 16 34 H 0.40 3.89 6.87 -40.82 -0.28 3.61 16 35 H 0.09 1.12 7.58 -51.93 -0.39 0.72 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.63 7.60 -51.93 -0.39 0.24 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.45 6.51 -51.93 -0.34 0.11 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 LS Contribution 359.00 15.07 5.41 5.41 Total: -1.00 -30.22 359.00 -9.31 -39.53 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -8.47 Total: 7.09 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -1.09 Total: -8.77 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -0.23 Total: -49.16 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.22 -9.31 -39.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594011660.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.518 kcal (2) G-P(sol) polarization free energy of solvation -30.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds