Wall clock time and date at job start Tue Mar 31 2020 06:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46902 * 2 1 4 4 N 1.46499 * 109.47415 * 180.02562 * 3 2 1 5 5 C 1.46493 * 120.00386 * 89.99669 * 4 3 2 6 6 C 1.52998 * 109.47240 * 86.01442 * 5 4 3 7 7 C 1.53007 * 117.49681 * 242.64292 * 6 5 4 8 8 C 1.52999 * 117.50058 * 173.98414 * 6 5 4 9 9 C 1.34780 * 119.99837 * 270.00321 * 4 3 2 10 10 O 1.21279 * 119.99875 * 4.83660 * 9 4 3 11 11 C 1.50696 * 120.00132 * 184.83874 * 9 4 3 12 12 H 1.09001 * 109.47081 * 327.34022 * 11 9 4 13 13 N 1.46898 * 109.47175 * 207.33731 * 11 9 4 14 14 C 1.53005 * 109.46967 * 87.33815 * 11 9 4 15 15 C 1.53006 * 109.46854 * 185.41092 * 14 11 9 16 16 C 1.52995 * 109.46776 * 179.97438 * 15 14 11 17 17 C 1.50707 * 109.47056 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99547 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99974 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99810 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00022 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47148 * 89.99871 * 21 19 17 23 23 H 1.48502 * 109.46983 * 209.99868 * 21 19 17 24 24 H 1.48505 * 109.47255 * 329.99600 * 21 19 17 25 25 H 1.08997 * 109.46968 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47237 * 299.99543 * 1 2 3 27 27 H 1.08995 * 109.47505 * 59.99646 * 1 2 3 28 28 H 1.09000 * 109.47237 * 240.00457 * 2 1 3 29 29 H 1.08993 * 109.47796 * 119.99898 * 2 1 3 30 30 H 1.09003 * 109.47240 * 300.00146 * 3 2 1 31 31 H 1.09004 * 109.47283 * 60.00296 * 3 2 1 32 32 H 1.09001 * 109.47637 * 206.01666 * 5 4 3 33 33 H 1.08998 * 109.47262 * 326.01383 * 5 4 3 34 34 H 1.08996 * 115.54765 * 28.30608 * 6 5 4 35 35 H 1.08991 * 117.50145 * 359.97438 * 7 6 5 36 36 H 1.09005 * 117.49534 * 145.01931 * 7 6 5 37 37 H 1.09001 * 117.49757 * 214.97610 * 8 6 5 38 38 H 1.08994 * 117.50123 * 359.97438 * 8 6 5 39 39 H 1.00892 * 111.00364 * 300.00277 * 13 11 9 40 40 H 1.00908 * 110.99964 * 63.95827 * 13 11 9 41 41 H 1.08990 * 109.47112 * 305.41441 * 14 11 9 42 42 H 1.08998 * 109.46785 * 65.41500 * 14 11 9 43 43 H 1.08991 * 109.47237 * 300.00530 * 15 14 11 44 44 H 1.09001 * 109.46737 * 60.00229 * 15 14 11 45 45 H 1.09005 * 109.47644 * 300.00354 * 16 15 14 46 46 H 1.09001 * 109.47254 * 60.00603 * 16 15 14 47 47 H 0.97005 * 120.00290 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.2370 1.4429 -1.2695 6 6 4.4048 2.8819 -1.7613 7 6 3.7471 3.2552 -3.0914 8 6 5.2682 3.1076 -3.0041 9 6 4.1793 1.4425 1.1664 10 8 3.5765 1.3537 2.2150 11 6 5.6822 1.5527 1.1681 12 1 6.0835 1.0634 0.2806 13 7 6.2194 0.9026 2.3709 14 6 6.0853 3.0287 1.1629 15 6 7.6053 3.1417 1.0287 16 6 8.0083 4.6176 1.0228 17 6 9.5054 4.7291 0.8900 18 1 10.1088 3.8364 0.8166 19 6 10.1044 5.9706 0.8611 20 7 11.4107 6.0678 0.7446 21 14 9.0604 7.5145 0.9872 22 1 8.9101 7.8951 2.4147 23 1 9.7202 8.6199 0.2470 24 1 7.7211 7.2558 0.4002 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 5.2185 0.9922 -1.1229 33 1 3.6805 0.8684 -2.0101 34 1 4.4341 3.6443 -0.9829 35 1 3.1952 2.4755 -3.6162 36 1 3.3441 4.2634 -3.1881 37 1 5.8652 4.0187 -3.0434 38 1 5.7170 2.2310 -3.4711 39 1 5.8621 1.3385 3.2078 40 1 6.0219 -0.0869 2.3660 41 1 5.6079 3.5327 0.3228 42 1 5.7672 3.4954 2.0951 43 1 8.0827 2.6376 1.8688 44 1 7.9234 2.6749 0.0965 45 1 7.5308 5.1214 0.1824 46 1 7.6902 5.0849 1.9548 47 1 11.8323 6.9412 0.7246 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594427606.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:24 Heat of formation + Delta-G solvation = -33.896271 kcal Electronic energy + Delta-G solvation = -23133.539320 eV Core-core repulsion = 19930.235352 eV Total energy + Delta-G solvation = -3203.303968 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.44143 -37.72878 -36.27404 -35.45743 -33.50024 -33.13120 -31.52513 -28.52102 -27.75657 -26.62022 -24.53984 -22.56030 -22.36473 -21.41963 -21.21130 -19.95883 -18.87554 -17.44329 -16.88669 -16.64327 -15.87792 -15.42213 -15.12308 -14.95156 -14.55613 -14.14777 -14.09280 -13.81033 -13.43457 -13.17025 -12.93595 -12.56242 -12.34192 -12.18472 -12.04001 -11.83837 -11.76650 -11.61357 -11.48315 -11.30245 -10.97178 -10.81291 -10.72284 -10.44665 -10.29920 -10.05464 -9.84600 -9.59444 -9.44967 -9.11064 -8.86204 -8.56928 -8.47332 -5.98202 -3.94958 2.51288 2.81880 3.34258 3.41225 3.44752 3.63799 4.31560 4.50290 4.56987 4.62409 4.69011 4.74947 4.75712 4.88064 4.97289 5.00289 5.06688 5.21274 5.28167 5.36068 5.37233 5.43657 5.46274 5.51303 5.55685 5.72066 5.82202 5.83211 5.85299 5.95750 6.02028 6.03425 6.08482 6.36656 6.41445 6.69448 6.81710 7.04573 7.05400 7.26584 7.43910 7.49163 7.57144 7.87378 8.06301 8.62437 9.08611 9.65163 11.15567 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019099 B = 0.004113 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.725963 B = 6806.129676 C = 7558.974741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.138 4.138 3 C 0.114 3.886 4 N -0.608 5.608 5 C 0.138 3.862 6 C -0.178 4.178 7 C -0.182 4.182 8 C -0.167 4.167 9 C 0.483 3.517 10 O -0.547 6.547 11 C 0.077 3.923 12 H 0.101 0.899 13 N -0.813 5.813 14 C -0.108 4.108 15 C -0.090 4.090 16 C -0.015 4.015 17 C -0.514 4.514 18 H 0.072 0.928 19 C 0.064 3.936 20 N -0.906 5.906 21 Si 0.879 3.121 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.267 1.267 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.350 0.650 40 H 0.337 0.663 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.068 0.932 44 H 0.051 0.949 45 H 0.011 0.989 46 H 0.008 0.992 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.798 -11.588 -6.788 24.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.176 4.176 3 C -0.009 4.009 4 N -0.341 5.341 5 C 0.015 3.985 6 C -0.197 4.197 7 C -0.218 4.218 8 C -0.205 4.205 9 C 0.270 3.730 10 O -0.424 6.424 11 C -0.039 4.039 12 H 0.119 0.881 13 N -0.341 5.341 14 C -0.146 4.146 15 C -0.128 4.128 16 C -0.052 4.052 17 C -0.553 4.553 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.546 5.546 21 Si 0.706 3.294 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.191 1.191 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.131 0.869 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.120 0.880 38 H 0.115 0.885 39 H 0.164 0.836 40 H 0.149 0.851 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.029 0.971 46 H 0.026 0.974 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.245 -11.270 -6.483 24.060 hybrid contribution -1.493 0.749 0.140 1.676 sum -21.738 -10.521 -6.343 24.969 Atomic orbital electron populations 1.21685 0.95201 1.01833 1.01924 1.21859 0.96111 0.97346 1.02310 1.21503 0.79601 0.96803 1.03025 1.48099 1.06439 1.73342 1.06188 1.21269 0.97458 0.94785 0.85011 1.22918 1.06120 0.98384 0.92302 1.23054 0.96054 1.02662 1.00079 1.22974 0.93147 1.04046 1.00294 1.22548 0.92493 0.74847 0.83134 1.90659 1.70667 1.49806 1.31259 1.21814 0.86694 0.99302 0.96065 0.88121 1.59050 1.63787 1.07205 1.04076 1.21748 1.00032 0.90823 1.02018 1.21340 0.90778 0.99005 1.01643 1.19591 0.97277 0.92523 0.95819 1.21180 0.90470 0.94039 1.49561 0.90989 1.25037 0.94746 0.99019 0.94805 1.69922 1.09045 1.24223 1.51384 0.86797 0.81025 0.83127 0.78407 1.20378 1.21525 1.19150 0.92561 0.92511 0.92653 0.92089 0.91652 0.90604 0.90211 0.89179 0.90327 0.86925 0.88989 0.88947 0.88025 0.88495 0.83579 0.85101 0.91530 0.92101 0.91375 0.93062 0.97072 0.97362 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.14 -1.19 6.26 -26.73 -0.17 -1.36 16 3 C 0.11 1.11 5.39 -4.04 -0.02 1.09 16 4 N -0.61 -6.59 2.47 -173.69 -0.43 -7.02 16 5 C 0.14 1.24 5.53 -4.05 -0.02 1.22 16 6 C -0.18 -1.77 5.36 -90.62 -0.49 -2.26 16 7 C -0.18 -1.55 10.18 -26.69 -0.27 -1.82 16 8 C -0.17 -1.62 10.25 -26.69 -0.27 -1.90 16 9 C 0.48 6.54 6.84 -10.99 -0.08 6.46 16 10 O -0.55 -9.01 15.95 5.56 0.09 -8.92 16 11 C 0.08 1.03 2.58 -68.86 -0.18 0.86 16 12 H 0.10 1.23 5.85 -51.93 -0.30 0.93 16 13 N -0.81 -11.04 8.53 -5.65 -0.05 -11.09 16 14 C -0.11 -1.73 4.84 -26.73 -0.13 -1.86 16 15 C -0.09 -1.77 5.04 -26.73 -0.13 -1.91 16 16 C -0.01 -0.35 4.04 -27.88 -0.11 -0.47 16 17 C -0.51 -14.86 9.66 -34.44 -0.33 -15.20 16 18 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 19 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 20 N -0.91 -28.35 13.96 55.43 0.77 -27.57 16 21 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.62 8.07 -51.93 -0.42 0.20 16 31 H 0.08 0.92 7.50 -51.93 -0.39 0.53 16 32 H 0.09 0.80 5.73 -51.93 -0.30 0.50 16 33 H 0.08 0.56 7.83 -51.93 -0.41 0.16 16 34 H 0.11 1.36 6.14 -51.93 -0.32 1.04 16 35 H 0.09 0.65 8.03 -51.93 -0.42 0.23 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.35 4.95 8.55 -39.30 -0.34 4.62 16 40 H 0.34 3.95 9.06 -39.29 -0.36 3.59 16 41 H 0.07 1.01 5.28 -51.93 -0.27 0.74 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.07 1.42 7.76 -51.93 -0.40 1.01 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.01 0.26 7.20 -51.93 -0.37 -0.11 16 46 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 47 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 372.78 15.07 5.62 5.62 Total: -1.00 -32.59 372.78 -9.10 -41.70 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -8.50 Total: 5.88 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -1.93 Total: -16.02 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 0.30 Total: -45.68 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.59 -9.10 -41.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594427606.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.799 kcal (2) G-P(sol) polarization free energy of solvation -32.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds