Wall clock time and date at job start Tue Mar 31 2020 06:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47136 * 2 1 4 4 N 1.46503 * 109.46894 * 179.97438 * 3 2 1 5 5 C 1.46497 * 119.99654 * 269.99265 * 4 3 2 6 6 C 1.52993 * 109.47394 * 270.91642 * 5 4 3 7 7 C 1.53002 * 117.49906 * 243.04115 * 6 5 4 8 8 C 1.53000 * 117.49934 * 174.38377 * 6 5 4 9 9 C 1.34774 * 120.00220 * 89.99458 * 4 3 2 10 10 O 1.21285 * 119.99720 * 5.11745 * 9 4 3 11 11 C 1.50696 * 120.00099 * 185.10843 * 9 4 3 12 12 H 1.09004 * 109.46734 * 25.94593 * 11 9 4 13 13 N 1.46898 * 109.47057 * 145.93814 * 11 9 4 14 14 C 1.52999 * 109.47699 * 265.94310 * 11 9 4 15 15 C 1.52995 * 109.47434 * 176.27587 * 14 11 9 16 16 C 1.52999 * 109.46924 * 180.02562 * 15 14 11 17 17 C 1.50707 * 109.46753 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00151 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99684 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00398 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99799 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47144 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47016 * 120.00485 * 21 19 17 24 24 H 1.48505 * 109.47332 * 240.00225 * 21 19 17 25 25 H 1.08996 * 109.47216 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47448 * 300.00344 * 1 2 3 27 27 H 1.09003 * 109.46694 * 60.00380 * 1 2 3 28 28 H 1.08997 * 109.47160 * 239.99224 * 2 1 3 29 29 H 1.09003 * 109.46694 * 119.99620 * 2 1 3 30 30 H 1.08994 * 109.47233 * 59.99524 * 3 2 1 31 31 H 1.09000 * 109.46513 * 299.99454 * 3 2 1 32 32 H 1.09001 * 109.47347 * 30.91796 * 5 4 3 33 33 H 1.09002 * 109.47221 * 150.91289 * 5 4 3 34 34 H 1.08996 * 115.55278 * 28.71450 * 6 5 4 35 35 H 1.08999 * 117.50053 * 0.02562 * 7 6 5 36 36 H 1.09004 * 117.49565 * 145.01981 * 7 6 5 37 37 H 1.09004 * 117.49988 * 214.98004 * 8 6 5 38 38 H 1.08993 * 117.50078 * 359.97438 * 8 6 5 39 39 H 1.00898 * 111.00391 * 296.05353 * 13 11 9 40 40 H 1.00904 * 110.99545 * 60.00466 * 13 11 9 41 41 H 1.09008 * 109.46907 * 296.27814 * 14 11 9 42 42 H 1.08999 * 109.47023 * 56.27194 * 14 11 9 43 43 H 1.09000 * 109.46960 * 299.99991 * 15 14 11 44 44 H 1.08999 * 109.47336 * 59.99799 * 15 14 11 45 45 H 1.09000 * 109.47171 * 299.99711 * 16 15 14 46 46 H 1.08999 * 109.47386 * 60.00245 * 16 15 14 47 47 H 0.96995 * 120.00562 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2369 1.4428 1.2697 6 6 4.4718 2.8851 1.7226 7 6 5.9206 3.3653 1.8284 8 6 5.1076 3.0991 3.0977 9 6 4.1794 1.4421 -1.1662 10 8 3.5771 1.5356 -2.2148 11 6 5.6819 1.3259 -1.1681 12 1 6.0074 0.8091 -0.2653 13 7 6.1127 0.5663 -2.3494 14 6 6.3017 2.7242 -1.2070 15 6 7.8246 2.6097 -1.1153 16 6 8.4443 4.0081 -1.1535 17 6 9.9444 3.8954 -1.0625 18 1 10.4092 2.9236 -0.9848 19 6 10.7234 5.0329 -1.0785 20 7 10.1574 6.2163 -1.1727 21 14 12.5827 4.8933 -0.9650 22 1 12.9665 3.4621 -0.8677 23 1 13.1987 5.4893 -2.1777 24 1 13.0609 5.6176 0.2400 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9562 -0.8901 32 1 3.6547 0.9150 2.0250 33 1 5.1964 0.9431 1.1359 34 1 3.7246 3.6082 1.3957 35 1 6.7065 2.6538 1.5749 36 1 6.1265 4.4044 1.5714 37 1 4.7789 3.9632 3.6753 38 1 5.3581 2.2124 3.6799 39 1 5.7691 -0.3818 -2.3148 40 1 5.8227 1.0252 -3.1999 41 1 6.0299 3.2163 -2.1409 42 1 5.9300 3.3098 -0.3662 43 1 8.0964 2.1177 -0.1814 44 1 8.1963 2.0241 -1.9561 45 1 8.1725 4.5006 -2.0871 46 1 8.0726 4.5933 -0.3124 47 1 10.7053 7.0166 -1.1836 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594427609.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:28 Heat of formation + Delta-G solvation = -36.726723 kcal Electronic energy + Delta-G solvation = -23235.141934 eV Core-core repulsion = 20031.715228 eV Total energy + Delta-G solvation = -3203.426705 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.38844 -37.58472 -36.31489 -35.25689 -33.46668 -33.08999 -31.32901 -28.21749 -27.62902 -26.46859 -24.48311 -22.57718 -22.31804 -21.50513 -20.94110 -19.93865 -18.85988 -17.48340 -16.57762 -16.25943 -15.69009 -15.35005 -15.07864 -14.95439 -14.41103 -14.33727 -14.04942 -13.72258 -13.41069 -13.06232 -12.75966 -12.36918 -12.31314 -12.06929 -11.85569 -11.67584 -11.57505 -11.39660 -11.31329 -11.10127 -10.94874 -10.77177 -10.56048 -10.39298 -10.34098 -10.10491 -9.91707 -9.48968 -9.17879 -8.99286 -8.80569 -8.47748 -8.26926 -5.92835 -3.94035 2.59295 2.87395 3.35166 3.42725 3.47285 3.79293 4.44484 4.52787 4.62051 4.69245 4.72999 4.79477 4.86143 4.98981 5.00668 5.04268 5.23624 5.28415 5.33598 5.43121 5.43918 5.49120 5.55615 5.60561 5.70042 5.74525 5.85398 5.97324 6.06265 6.07400 6.17932 6.23462 6.28014 6.42824 6.56549 6.88693 7.07889 7.12181 7.29052 7.33043 7.53543 7.78995 7.95075 8.09578 8.14204 8.52968 9.13986 9.69611 11.18555 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023695 B = 0.003783 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.402338 B = 7400.159823 C = 8122.961377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.137 4.137 3 C 0.110 3.890 4 N -0.610 5.610 5 C 0.138 3.862 6 C -0.182 4.182 7 C -0.165 4.165 8 C -0.177 4.177 9 C 0.485 3.515 10 O -0.547 6.547 11 C 0.077 3.923 12 H 0.097 0.903 13 N -0.813 5.813 14 C -0.111 4.111 15 C -0.097 4.097 16 C 0.021 3.979 17 C -0.514 4.514 18 H 0.055 0.945 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.888 3.112 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.335 0.665 40 H 0.351 0.649 41 H 0.059 0.941 42 H 0.076 0.924 43 H 0.042 0.958 44 H 0.061 0.939 45 H 0.012 0.988 46 H 0.013 0.987 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.387 -11.687 7.537 22.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.176 4.176 3 C -0.012 4.012 4 N -0.342 5.342 5 C 0.014 3.986 6 C -0.202 4.202 7 C -0.202 4.202 8 C -0.214 4.214 9 C 0.273 3.727 10 O -0.424 6.424 11 C -0.038 4.038 12 H 0.114 0.886 13 N -0.342 5.342 14 C -0.149 4.149 15 C -0.134 4.134 16 C -0.016 4.016 17 C -0.552 4.552 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.717 3.283 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.212 1.212 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.146 0.854 40 H 0.165 0.835 41 H 0.078 0.922 42 H 0.094 0.906 43 H 0.061 0.939 44 H 0.079 0.921 45 H 0.031 0.969 46 H 0.031 0.969 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.909 -11.322 7.203 21.587 hybrid contribution -0.086 0.056 -0.023 0.105 sum -16.995 -11.266 7.180 21.617 Atomic orbital electron populations 1.21685 0.95156 1.01841 1.01965 1.21865 0.96152 0.97319 1.02267 1.21508 0.79799 0.96789 1.03152 1.48096 1.06304 1.73547 1.06300 1.21262 0.97454 0.94960 0.84881 1.22771 0.98178 0.97872 1.01348 1.23221 0.93124 1.03755 1.00094 1.22962 1.04743 1.03213 0.90511 1.22523 0.92383 0.74717 0.83112 1.90656 1.70759 1.49639 1.31358 1.21824 0.87059 0.98954 0.95941 0.88566 1.59071 1.65208 1.05483 1.04414 1.21815 0.98753 0.91692 1.02638 1.21504 0.90623 1.00639 1.00670 1.19105 0.94935 0.90666 0.96895 1.21323 0.92065 0.92459 1.49376 0.92682 1.25021 0.98437 0.95507 0.95582 1.69976 1.35065 0.97415 1.51244 0.86594 0.86164 0.78088 0.77502 1.19738 1.21126 1.21152 0.92547 0.92618 0.92489 0.91837 0.91985 0.90709 0.89966 0.90172 0.89511 0.87780 0.87689 0.88021 0.88907 0.88846 0.85378 0.83505 0.92228 0.90599 0.93909 0.92057 0.96938 0.96874 0.93224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.71 16 2 C -0.14 -1.21 6.26 -26.73 -0.17 -1.37 16 3 C 0.11 1.11 5.45 -4.04 -0.02 1.09 16 4 N -0.61 -6.95 2.47 -173.69 -0.43 -7.38 16 5 C 0.14 1.31 5.59 -4.05 -0.02 1.29 16 6 C -0.18 -1.92 5.50 -90.62 -0.50 -2.42 16 7 C -0.17 -2.07 7.55 -26.69 -0.20 -2.27 16 8 C -0.18 -1.73 10.25 -26.69 -0.27 -2.00 16 9 C 0.49 6.95 6.80 -10.99 -0.07 6.88 16 10 O -0.55 -9.51 15.97 5.55 0.09 -9.42 16 11 C 0.08 1.10 2.62 -68.87 -0.18 0.92 16 12 H 0.10 1.23 5.77 -51.93 -0.30 0.93 16 13 N -0.81 -11.46 8.51 -5.66 -0.05 -11.51 16 14 C -0.11 -1.90 4.61 -26.73 -0.12 -2.02 16 15 C -0.10 -1.97 5.03 -26.73 -0.13 -2.10 16 16 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 17 C -0.51 -14.63 9.11 -34.44 -0.31 -14.94 16 18 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 20 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 21 Si 0.89 21.89 29.54 -169.99 -5.02 16.86 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 31 H 0.08 0.99 7.36 -51.93 -0.38 0.60 16 32 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 33 H 0.09 0.82 5.36 -51.93 -0.28 0.55 16 34 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.10 1.40 7.46 -51.93 -0.39 1.01 16 36 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.33 4.01 9.06 -39.29 -0.36 3.66 16 40 H 0.35 5.21 8.56 -39.29 -0.34 4.87 16 41 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 42 H 0.08 1.25 4.53 -51.93 -0.24 1.01 16 43 H 0.04 0.83 7.78 -51.93 -0.40 0.43 16 44 H 0.06 1.31 7.71 -51.93 -0.40 0.91 16 45 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 373.70 15.07 5.63 5.63 Total: -1.00 -31.99 373.70 -9.45 -41.44 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -8.53 Total: 6.60 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -1.88 Total: -15.76 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.26 Total: -45.36 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.42 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.99 -9.45 -41.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594427609.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.714 kcal (2) G-P(sol) polarization free energy of solvation -31.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds