Wall clock time and date at job start Tue Mar 31 2020 05:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46922 * 2 1 4 4 H 1.08996 * 109.47160 * 54.99979 * 3 2 1 5 5 C 1.50699 * 109.46794 * 174.99846 * 3 2 1 6 6 H 1.08003 * 120.00020 * 120.00196 * 5 3 2 7 7 C 1.37881 * 120.00190 * 299.99709 * 5 3 2 8 8 N 1.31515 * 119.99563 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 119.99998 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46715 * 90.00534 * 9 7 5 11 11 H 1.48495 * 109.47408 * 210.00208 * 9 7 5 12 12 H 1.48494 * 109.47568 * 330.00482 * 9 7 5 13 13 N 1.46897 * 109.47503 * 294.99884 * 3 2 1 14 14 C 1.46894 * 111.00255 * 155.85387 * 13 3 2 15 15 C 1.53121 * 109.52515 * 274.36262 * 14 13 3 16 16 C 1.53042 * 109.27639 * 182.50364 * 15 14 13 17 17 N 1.46843 * 109.57349 * 59.08456 * 16 15 14 18 18 C 1.46905 * 110.99812 * 174.19149 * 17 16 15 19 19 H 1.09006 * 110.43498 * 73.12250 * 18 17 16 20 20 C 1.54811 * 110.48706 * 310.43432 * 18 17 16 21 21 C 1.55000 * 102.09007 * 220.43965 * 20 18 17 22 22 O 1.44383 * 103.48659 * 37.02442 * 21 20 18 23 23 C 1.43744 * 106.97672 * 319.93666 * 22 21 20 24 24 C 1.46845 * 111.19954 * 298.28935 * 17 16 15 25 25 C 1.53029 * 109.52414 * 61.74250 * 24 17 16 26 26 H 1.09000 * 109.46649 * 295.57998 * 1 2 3 27 27 H 1.08994 * 109.47080 * 55.57892 * 1 2 3 28 28 H 1.08994 * 109.47328 * 175.58383 * 1 2 3 29 29 H 1.08998 * 109.46784 * 240.00553 * 2 1 3 30 30 H 1.08994 * 109.47211 * 119.99766 * 2 1 3 31 31 H 0.97007 * 119.99273 * 179.97438 * 8 7 5 32 32 H 1.00907 * 111.00076 * 279.81130 * 13 3 2 33 33 H 1.09000 * 109.52304 * 34.48853 * 14 13 3 34 34 H 1.09004 * 109.50382 * 302.38369 * 15 14 13 35 35 H 1.09005 * 109.50004 * 62.50128 * 15 14 13 36 36 H 1.09002 * 109.40837 * 299.07131 * 16 15 14 37 37 H 1.08996 * 109.45215 * 179.13119 * 16 15 14 38 38 H 1.08997 * 110.90719 * 338.63355 * 20 18 17 39 39 H 1.09000 * 110.90686 * 102.24751 * 20 18 17 40 40 H 1.08996 * 110.62028 * 278.52790 * 21 20 18 41 41 H 1.09000 * 110.61953 * 155.52218 * 21 20 18 42 42 H 1.09007 * 109.87921 * 267.09117 * 23 22 21 43 43 H 1.09000 * 110.00293 * 146.00934 * 23 22 21 44 44 H 1.09000 * 109.46076 * 301.72643 * 24 17 16 45 45 H 1.09003 * 109.46390 * 181.76420 * 24 17 16 46 46 H 1.09001 * 109.50875 * 180.87819 * 25 24 17 47 47 H 1.08999 * 109.50352 * 60.76309 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1473 1.8889 -0.6522 7 6 4.1433 0.8784 1.2281 8 7 3.4062 0.3367 2.1729 9 14 6.0049 0.8800 1.3812 10 1 6.4427 2.1130 2.0838 11 1 6.4391 -0.3109 2.1546 12 1 6.6131 0.8395 0.0271 13 7 1.6515 2.0994 -1.2552 14 6 1.5923 3.5578 -1.0899 15 6 0.2159 3.9562 -0.5500 16 6 0.1387 5.4806 -0.4390 17 7 0.3603 6.0819 -1.7602 18 6 0.1570 7.5362 -1.7176 19 1 0.9857 8.0213 -1.2016 20 6 -1.1871 7.8754 -1.0285 21 6 -1.7209 9.0330 -1.9103 22 8 -1.3194 8.6530 -3.2441 23 6 0.0041 8.1015 -3.1429 24 6 1.6947 5.7520 -2.2767 25 6 1.8179 4.2359 -2.4440 26 1 -0.3632 0.4437 0.9270 27 1 -0.3633 0.5809 -0.8477 28 1 -0.3633 -1.0245 -0.0791 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.8293 -0.0617 2.9496 32 1 2.2772 1.8455 -2.0050 33 1 2.3644 3.8766 -0.3897 34 1 -0.5584 3.6020 -1.2306 35 1 0.0681 3.5108 0.4338 36 1 0.9036 5.8326 0.2531 37 1 -0.8456 5.7682 -0.0695 38 1 -1.8644 7.0218 -1.0555 39 1 -1.0254 8.2099 -0.0038 40 1 -1.2584 9.9778 -1.6248 41 1 -2.8067 9.0994 -1.8406 42 1 0.7452 8.8825 -3.3134 43 1 0.1324 7.3032 -3.8739 44 1 2.4523 6.1028 -1.5759 45 1 1.8408 6.2370 -3.2419 46 1 2.8138 3.9901 -2.8126 47 1 1.0696 3.8862 -3.1553 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594612792.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:21 Heat of formation + Delta-G solvation = -50.867740 kcal Electronic energy + Delta-G solvation = -23497.121079 eV Core-core repulsion = 20293.081173 eV Total energy + Delta-G solvation = -3204.039906 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.03236 -38.23088 -35.98262 -33.56403 -31.78393 -31.05409 -30.64146 -29.45740 -27.93102 -25.95153 -23.69251 -23.16257 -22.26086 -21.78987 -20.44723 -19.40697 -19.19305 -17.03304 -16.57917 -16.44896 -15.44410 -15.12272 -14.86895 -14.57917 -14.26773 -13.83220 -13.63488 -13.41041 -13.03607 -12.84107 -12.78681 -12.31612 -11.90768 -11.85135 -11.57008 -11.44387 -11.31767 -11.21899 -11.09365 -11.01869 -10.86658 -10.71715 -10.61998 -10.29542 -10.13375 -9.80806 -9.79481 -9.54355 -9.39212 -9.00516 -8.37318 -8.28224 -7.22939 -6.00130 -4.13262 3.24376 3.32177 3.34699 3.74539 3.83418 4.31567 4.37926 4.73919 4.92355 4.98333 5.03810 5.05812 5.19168 5.24801 5.30198 5.44898 5.49670 5.51681 5.56954 5.64904 5.67783 5.74763 5.81577 5.91588 6.02072 6.19912 6.23249 6.34451 6.40646 6.48921 6.55040 6.66829 6.69534 6.75393 6.92038 7.14956 7.17405 7.17814 7.21086 7.47823 7.61723 7.78356 8.10972 8.18230 8.36262 8.69652 9.00778 9.54390 10.99487 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023999 B = 0.003862 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.450734 B = 7247.677743 C = 7739.531391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.032 0.968 5 C -0.544 4.544 6 H 0.052 0.948 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.684 5.684 14 C 0.093 3.907 15 C -0.100 4.100 16 C 0.055 3.945 17 N -0.525 5.525 18 C 0.049 3.951 19 H 0.053 0.947 20 C -0.152 4.152 21 C 0.048 3.952 22 O -0.376 6.376 23 C 0.056 3.944 24 C 0.058 3.942 25 C -0.115 4.115 26 H 0.034 0.966 27 H 0.051 0.949 28 H 0.023 0.977 29 H 0.029 0.971 30 H 0.089 0.911 31 H 0.261 0.739 32 H 0.327 0.673 33 H 0.042 0.958 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.030 0.970 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.057 0.943 41 H 0.092 0.908 42 H 0.055 0.945 43 H 0.095 0.905 44 H 0.032 0.968 45 H 0.070 0.930 46 H 0.062 0.938 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.217 14.030 -6.299 16.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.050 0.950 5 C -0.584 4.584 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.209 1.209 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.313 5.313 14 C -0.017 4.017 15 C -0.138 4.138 16 C -0.073 4.073 17 N -0.250 5.250 18 C -0.060 4.060 19 H 0.071 0.929 20 C -0.190 4.190 21 C -0.029 4.029 22 O -0.295 6.295 23 C -0.021 4.021 24 C -0.070 4.070 25 C -0.154 4.154 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.048 0.952 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.144 0.856 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.048 0.952 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.111 0.889 42 H 0.073 0.927 43 H 0.113 0.887 44 H 0.050 0.950 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.340 13.651 -6.519 17.274 hybrid contribution 2.938 0.499 1.113 3.181 sum -5.402 14.150 -5.406 16.082 Atomic orbital electron populations 1.21710 0.99006 0.98427 1.00370 1.21489 0.92119 0.99320 1.01540 1.19147 0.92531 0.91170 0.86354 0.95033 1.21888 0.92913 1.38098 1.05469 0.93016 1.24928 0.97797 0.95035 0.95753 1.69883 1.34744 1.38245 1.09418 0.86684 0.86239 0.77508 0.78080 1.20860 1.21137 1.20016 1.60903 1.55999 1.04902 1.09537 1.21325 0.95727 0.89955 0.94737 1.21554 0.98469 0.92126 1.01661 1.22191 1.00451 0.96212 0.88441 1.62097 1.29059 1.07835 1.26058 1.23024 0.97355 0.89543 0.96093 0.92931 1.23301 0.96764 0.99640 0.99251 1.23507 1.00628 0.96403 0.82358 1.88879 1.31788 1.81390 1.27396 1.23215 0.84590 0.97275 0.97047 1.22095 0.88415 0.97300 0.99201 1.21754 1.01544 0.93217 0.98846 0.94653 0.93026 0.95757 0.95219 0.89301 0.92926 0.85632 0.93982 0.91106 0.91573 0.95193 0.90788 0.88977 0.90345 0.92444 0.88941 0.92663 0.88731 0.94984 0.91172 0.91903 0.90764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.85 37.16 0.37 -2.47 16 2 C -0.11 -2.53 5.45 -26.73 -0.15 -2.67 16 3 C 0.22 5.23 1.80 -68.86 -0.12 5.10 16 4 H 0.03 0.85 7.19 -51.93 -0.37 0.48 16 5 C -0.54 -14.47 8.23 -34.44 -0.28 -14.75 16 6 H 0.05 1.37 7.75 -52.48 -0.41 0.96 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.81 11.29 55.43 0.63 -24.18 16 9 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 N -0.68 -13.95 5.43 -100.83 -0.55 -14.50 16 14 C 0.09 1.68 2.36 -67.59 -0.16 1.52 16 15 C -0.10 -1.64 5.58 -26.65 -0.15 -1.79 16 16 C 0.05 0.76 5.12 -3.83 -0.02 0.74 16 17 N -0.52 -6.78 4.42 -224.87 -0.99 -7.77 16 18 C 0.05 0.54 2.80 -66.19 -0.19 0.35 16 19 H 0.05 0.56 8.11 -51.93 -0.42 0.14 16 20 C -0.15 -1.45 5.50 -24.72 -0.14 -1.59 16 21 C 0.05 0.43 7.72 38.21 0.29 0.73 16 22 O -0.38 -4.53 11.52 -35.23 -0.41 -4.94 16 23 C 0.06 0.60 6.92 37.73 0.26 0.86 16 24 C 0.06 0.76 5.28 -3.84 -0.02 0.74 16 25 C -0.12 -1.73 5.36 -26.65 -0.14 -1.87 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 1.03 7.63 -51.93 -0.40 0.63 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.09 2.37 5.95 -51.93 -0.31 2.06 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.33 6.66 8.07 -39.29 -0.32 6.34 16 33 H 0.04 0.88 7.60 -51.93 -0.39 0.49 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.07 1.20 7.50 -51.93 -0.39 0.81 16 36 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.92 6.06 -51.93 -0.31 0.60 16 38 H 0.09 0.97 6.97 -51.93 -0.36 0.61 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.09 1.07 7.14 -51.93 -0.37 0.70 16 44 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.80 6.95 -51.93 -0.36 0.44 16 46 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 353.73 15.07 5.33 5.33 Total: -1.00 -27.78 353.73 -10.17 -37.95 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -8.62 Total: 5.50 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -0.54 Total: -13.37 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: -0.92 Total: -46.45 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: -0.41 Total: -4.94 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.78 -10.17 -37.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594612792.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.915 kcal (2) G-P(sol) polarization free energy of solvation -27.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds