Wall clock time and date at job start Tue Mar 31 2020 05:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46555 * 2 1 4 4 H 1.08998 * 109.47325 * 305.65095 * 3 2 1 5 5 C 1.50704 * 109.46646 * 185.65367 * 3 2 1 6 6 H 1.08000 * 119.99889 * 239.99428 * 5 3 2 7 7 C 1.37872 * 119.99961 * 60.00518 * 5 3 2 8 8 N 1.31515 * 120.00140 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99835 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47151 * 89.99711 * 9 7 5 11 11 H 1.48497 * 109.47516 * 209.99614 * 9 7 5 12 12 H 1.48499 * 109.47371 * 329.99978 * 9 7 5 13 13 N 1.46901 * 109.47235 * 65.65356 * 3 2 1 14 14 C 1.46897 * 111.00074 * 208.25646 * 13 3 2 15 15 C 1.53120 * 109.52442 * 153.27810 * 14 13 3 16 16 C 1.53026 * 109.27964 * 177.62401 * 15 14 13 17 17 N 1.46846 * 109.52675 * 300.82228 * 16 15 14 18 18 C 1.46901 * 111.00506 * 185.84051 * 17 16 15 19 19 H 1.08999 * 111.01473 * 50.77757 * 18 17 16 20 20 C 1.55301 * 111.12611 * 174.99814 * 18 17 16 21 21 C 1.54383 * 102.43577 * 152.15152 * 20 18 17 22 22 O 1.43236 * 107.58765 * 338.54791 * 21 20 18 23 23 C 1.43638 * 109.97567 * 358.28301 * 22 21 20 24 24 C 1.46843 * 111.19723 * 61.73945 * 17 16 15 25 25 C 1.53037 * 109.52809 * 298.26025 * 24 17 16 26 26 H 1.09004 * 109.46886 * 173.85616 * 1 2 3 27 27 H 1.08996 * 109.47297 * 293.85346 * 1 2 3 28 28 H 1.08996 * 109.47485 * 53.85584 * 1 2 3 29 29 H 1.08997 * 109.47318 * 240.00363 * 2 1 3 30 30 H 1.08996 * 109.47478 * 120.00052 * 2 1 3 31 31 H 0.97003 * 119.99869 * 180.02562 * 8 7 5 32 32 H 1.00901 * 110.99799 * 332.21325 * 13 3 2 33 33 H 1.08999 * 109.52024 * 33.15849 * 14 13 3 34 34 H 1.08999 * 109.49950 * 57.68236 * 15 14 13 35 35 H 1.08996 * 109.50482 * 297.57037 * 15 14 13 36 36 H 1.09000 * 109.46528 * 180.80757 * 16 15 14 37 37 H 1.08996 * 109.46521 * 60.83800 * 16 15 14 38 38 H 1.08999 * 110.85097 * 33.86604 * 20 18 17 39 39 H 1.08997 * 110.85306 * 270.44283 * 20 18 17 40 40 H 1.09006 * 109.82874 * 98.05438 * 21 20 18 41 41 H 1.08995 * 109.83570 * 218.93620 * 21 20 18 42 42 H 1.08996 * 110.31380 * 143.34658 * 23 22 21 43 43 H 1.09001 * 110.31389 * 265.41896 * 23 22 21 44 44 H 1.09008 * 109.46299 * 58.27725 * 24 17 16 45 45 H 1.09001 * 109.46712 * 178.24319 * 24 17 16 46 46 H 1.08996 * 109.50236 * 299.23974 * 25 24 17 47 47 H 1.08996 * 109.50693 * 179.11431 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5963 1.9848 -0.8350 5 6 3.5404 1.4449 -0.1400 6 1 4.1540 1.8867 0.6312 7 6 4.1298 0.8834 -1.2527 8 7 3.3826 0.3452 -2.1917 9 14 5.9897 0.8869 -1.4265 10 1 6.5464 -0.3469 -0.8155 11 1 6.3524 0.9335 -2.8657 12 1 6.5492 2.0768 -0.7363 13 7 1.6647 2.0946 1.2618 14 6 1.5086 3.5438 1.0795 15 6 0.5269 4.0878 2.1211 16 6 0.4138 5.6058 1.9644 17 7 1.7363 6.2179 2.1455 18 6 1.6434 7.6839 2.1394 19 1 0.8769 8.0299 2.8329 20 6 3.0183 8.3333 2.4551 21 6 2.9207 9.6900 1.7250 22 8 1.9160 9.5650 0.7118 23 6 1.3894 8.2287 0.7052 24 6 2.6835 5.7464 1.1272 25 6 2.8645 4.2324 1.2589 26 1 -0.3633 -1.0218 -0.1100 27 1 -0.3634 0.4156 0.9398 28 1 -0.3634 0.6061 -0.8298 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.7974 -0.0502 -2.9743 32 1 0.8254 1.6857 1.6445 33 1 1.1269 3.7460 0.0787 34 1 0.8896 3.8512 3.1213 35 1 -0.4520 3.6325 1.9712 36 1 -0.2736 5.9981 2.7139 37 1 0.0380 5.8412 0.9687 38 1 3.8330 7.7328 2.0505 39 1 3.1416 8.4783 3.5283 40 1 2.6382 10.4706 2.4315 41 1 3.8799 9.9342 1.2685 42 1 0.3209 8.2441 0.4905 43 1 1.9137 7.6190 -0.0307 44 1 2.2971 5.9810 0.1353 45 1 3.6446 6.2406 1.2686 46 1 3.2639 3.9982 2.2456 47 1 3.5555 3.8805 0.4929 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594612958.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:28 Heat of formation + Delta-G solvation = -43.420018 kcal Electronic energy + Delta-G solvation = -23695.053880 eV Core-core repulsion = 20491.336932 eV Total energy + Delta-G solvation = -3203.716948 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.20189 -38.18636 -36.09739 -33.56889 -31.85858 -31.09004 -30.48426 -29.48314 -27.72502 -26.24634 -23.67354 -23.05527 -22.64540 -21.93914 -20.50492 -19.52719 -19.00421 -16.98704 -16.55884 -16.18476 -15.24565 -14.99939 -14.86922 -14.62272 -14.15130 -14.05184 -13.76214 -13.60309 -13.35116 -12.89886 -12.63153 -12.42818 -12.23462 -11.83091 -11.69534 -11.62678 -11.29801 -11.09064 -11.03594 -10.91428 -10.82256 -10.70114 -10.60113 -10.31595 -10.07574 -9.76540 -9.67721 -9.60913 -9.35776 -8.99552 -8.31660 -8.21021 -7.21034 -5.94880 -3.98000 3.32924 3.39755 3.42907 3.51571 4.11270 4.35423 4.45581 4.62725 4.82484 4.95412 5.02513 5.06744 5.14920 5.21462 5.34207 5.46453 5.48977 5.56159 5.58525 5.67300 5.70601 5.78428 5.89334 5.90972 6.03108 6.08952 6.15259 6.16810 6.27126 6.41101 6.41234 6.48884 6.75181 6.81757 6.84557 7.03194 7.08133 7.16835 7.18723 7.25933 7.52838 7.79880 7.95489 8.36239 8.43588 8.79340 9.09818 9.66459 11.10496 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017865 B = 0.004623 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.966664 B = 6055.393154 C = 7125.845725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C 0.219 3.781 4 H 0.001 0.999 5 C -0.487 4.487 6 H 0.064 0.936 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.682 5.682 14 C 0.100 3.900 15 C -0.120 4.120 16 C 0.061 3.939 17 N -0.519 5.519 18 C 0.054 3.946 19 H 0.097 0.903 20 C -0.152 4.152 21 C 0.050 3.950 22 O -0.385 6.385 23 C 0.013 3.987 24 C 0.046 3.954 25 C -0.102 4.102 26 H 0.036 0.964 27 H 0.034 0.966 28 H 0.041 0.959 29 H 0.099 0.901 30 H 0.040 0.960 31 H 0.258 0.742 32 H 0.317 0.683 33 H 0.030 0.970 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.032 0.968 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.035 0.965 45 H 0.074 0.926 46 H 0.068 0.932 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.992 13.074 8.078 16.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C 0.112 3.888 4 H 0.019 0.981 5 C -0.526 4.526 6 H 0.082 0.918 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.313 5.313 14 C -0.011 4.011 15 C -0.158 4.158 16 C -0.068 4.068 17 N -0.243 5.243 18 C -0.056 4.056 19 H 0.115 0.885 20 C -0.190 4.190 21 C -0.027 4.027 22 O -0.303 6.303 23 C -0.066 4.066 24 C -0.081 4.081 25 C -0.140 4.140 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.117 0.883 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.135 0.865 33 H 0.048 0.952 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.050 0.950 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.053 0.947 45 H 0.092 0.908 46 H 0.087 0.913 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.203 13.031 8.437 16.083 hybrid contribution -0.114 0.042 -1.368 1.373 sum -4.317 13.072 7.069 15.476 Atomic orbital electron populations 1.21875 0.99689 0.99660 0.99440 1.21802 0.91163 1.00625 1.03046 1.19242 0.95541 0.89833 0.84215 0.98099 1.21257 0.91274 1.36045 1.04043 0.91768 1.24964 0.97868 0.95801 0.95993 1.69874 1.34574 1.39668 1.09632 0.86604 0.86089 0.78420 0.76905 1.20819 1.21541 1.19971 1.60718 1.37913 1.01072 1.31613 1.21392 0.94285 0.89970 0.95447 1.21835 0.99086 0.93527 1.01356 1.22044 0.89669 0.95561 0.99480 1.62057 1.09534 1.03463 1.49294 1.23510 0.97771 0.88794 0.95503 0.88513 1.23213 0.98079 0.95687 1.02012 1.23128 0.92017 0.97352 0.90161 1.88381 1.55644 1.29832 1.56451 1.24285 0.99456 0.83911 0.98915 1.22379 0.95669 0.97846 0.92249 1.21660 0.98342 0.90338 1.03660 0.94444 0.94674 0.93994 0.88291 0.94091 0.93180 0.86490 0.95223 0.90534 0.92230 0.91099 0.95023 0.89575 0.89588 0.91374 0.91454 0.90084 0.91216 0.94668 0.90765 0.91290 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.65 37.16 0.36 -2.49 16 2 C -0.13 -2.96 5.34 -26.73 -0.14 -3.11 16 3 C 0.22 5.29 2.03 -68.86 -0.14 5.15 16 4 H 0.00 0.04 7.35 -51.93 -0.38 -0.34 16 5 C -0.49 -12.98 7.42 -34.44 -0.26 -13.23 16 6 H 0.06 1.73 6.96 -52.49 -0.37 1.37 16 7 C 0.05 1.46 5.29 -17.82 -0.09 1.37 16 8 N -0.90 -25.23 11.29 55.43 0.63 -24.60 16 9 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 13 N -0.68 -13.94 6.17 -100.82 -0.62 -14.56 16 14 C 0.10 1.79 2.56 -67.59 -0.17 1.62 16 15 C -0.12 -1.71 5.34 -26.66 -0.14 -1.86 16 16 C 0.06 0.76 5.27 -3.84 -0.02 0.74 16 17 N -0.52 -6.68 4.69 -223.66 -1.05 -7.73 16 18 C 0.05 0.60 3.18 -65.16 -0.21 0.39 16 19 H 0.10 0.98 8.07 -51.93 -0.42 0.56 16 20 C -0.15 -1.51 6.52 -24.79 -0.16 -1.67 16 21 C 0.05 0.50 7.80 37.88 0.30 0.79 16 22 O -0.38 -4.92 11.36 -35.23 -0.40 -5.32 16 23 C 0.01 0.15 6.64 38.49 0.26 0.41 16 24 C 0.05 0.67 4.61 -3.84 -0.02 0.65 16 25 C -0.10 -1.81 5.19 -26.65 -0.14 -1.95 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.03 0.59 6.68 -51.93 -0.35 0.25 16 28 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.10 2.60 5.94 -51.93 -0.31 2.29 16 30 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.32 5.98 6.19 -39.29 -0.24 5.74 16 33 H 0.03 0.59 7.36 -51.93 -0.38 0.21 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.77 8.07 -51.93 -0.42 0.35 16 37 H 0.03 0.40 7.82 -51.93 -0.41 0.00 16 38 H 0.09 0.92 5.84 -51.93 -0.30 0.62 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 0.90 5.60 -51.93 -0.29 0.61 16 44 H 0.04 0.53 6.21 -51.92 -0.32 0.21 16 45 H 0.07 1.02 5.87 -51.93 -0.30 0.71 16 46 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 47 H 0.09 1.85 6.29 -51.93 -0.33 1.52 16 LS Contribution 345.17 15.07 5.20 5.20 Total: -1.00 -27.87 345.17 -10.03 -37.90 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -8.18 Total: 6.10 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -0.58 Total: -13.19 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: -1.05 Total: -46.90 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -0.40 Total: -5.32 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.87 -10.03 -37.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594612958.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.523 kcal (2) G-P(sol) polarization free energy of solvation -27.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds