Wall clock time and date at job start Tue Mar 31 2020 05:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46853 * 2 1 4 4 H 1.09004 * 109.47046 * 181.84077 * 3 2 1 5 5 C 1.50704 * 109.47344 * 61.84743 * 3 2 1 6 6 H 1.07995 * 120.00064 * 245.65732 * 5 3 2 7 7 C 1.37880 * 119.99786 * 65.92481 * 5 3 2 8 8 N 1.31513 * 119.99939 * 193.24259 * 7 5 3 9 9 Si 1.86797 * 120.00035 * 13.24894 * 7 5 3 10 10 H 1.48499 * 109.47557 * 84.79707 * 9 7 5 11 11 H 1.48509 * 109.47002 * 204.79682 * 9 7 5 12 12 H 1.48499 * 109.47153 * 324.79102 * 9 7 5 13 13 N 1.46896 * 109.47577 * 301.84457 * 3 2 1 14 14 C 1.46900 * 111.00306 * 270.88817 * 13 3 2 15 15 C 1.53119 * 109.52144 * 278.90309 * 14 13 3 16 16 C 1.53050 * 109.27075 * 182.50172 * 15 14 13 17 17 N 1.46846 * 109.57523 * 59.08631 * 16 15 14 18 18 C 1.46904 * 110.99706 * 174.19154 * 17 16 15 19 19 H 1.09000 * 110.43568 * 73.11997 * 18 17 16 20 20 C 1.54811 * 110.48722 * 310.42411 * 18 17 16 21 21 C 1.54991 * 102.09191 * 220.44508 * 20 18 17 22 22 O 1.44379 * 103.48993 * 37.02537 * 21 20 18 23 23 C 1.43740 * 106.97628 * 319.93753 * 22 21 20 24 24 C 1.46845 * 111.19637 * 298.28482 * 17 16 15 25 25 C 1.53040 * 109.52181 * 61.74396 * 24 17 16 26 26 H 1.08998 * 109.47700 * 64.94334 * 1 2 3 27 27 H 1.09000 * 109.47367 * 184.94656 * 1 2 3 28 28 H 1.09001 * 109.47128 * 304.94642 * 1 2 3 29 29 H 1.08996 * 109.46926 * 240.00324 * 2 1 3 30 30 H 1.08997 * 109.47223 * 120.00157 * 2 1 3 31 31 H 0.97001 * 120.00454 * 180.02562 * 8 7 5 32 32 H 1.00904 * 111.00285 * 146.92849 * 13 3 2 33 33 H 1.08998 * 109.51960 * 39.02448 * 14 13 3 34 34 H 1.09000 * 109.50300 * 302.37719 * 15 14 13 35 35 H 1.08999 * 109.50503 * 62.50140 * 15 14 13 36 36 H 1.08996 * 109.41155 * 299.06782 * 16 15 14 37 37 H 1.09007 * 109.44985 * 179.12227 * 16 15 14 38 38 H 1.08999 * 110.90616 * 338.64882 * 20 18 17 39 39 H 1.08997 * 110.90222 * 102.24740 * 20 18 17 40 40 H 1.09006 * 110.61956 * 278.52557 * 21 20 18 41 41 H 1.08998 * 110.61666 * 155.52620 * 21 20 18 42 42 H 1.08994 * 109.87829 * 267.08576 * 23 22 21 43 43 H 1.09006 * 110.00217 * 146.00734 * 23 22 21 44 44 H 1.08999 * 109.46518 * 301.72767 * 24 17 16 45 45 H 1.08999 * 109.46388 * 181.76394 * 24 17 16 46 46 H 1.09003 * 109.50057 * 180.87840 * 25 24 17 47 47 H 1.09001 * 109.50285 * 60.76642 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1294 1.4427 -0.0330 5 6 1.5753 2.1396 1.2527 6 1 0.8788 2.9622 1.1862 7 6 2.0438 1.7306 2.4833 8 7 1.4564 2.1496 3.5829 9 14 3.5128 0.5816 2.5887 10 1 4.7669 1.3747 2.5291 11 1 3.4627 -0.1697 3.8688 12 1 3.4766 -0.3737 1.4524 13 7 1.5142 2.1478 -1.1765 14 6 2.4138 1.9947 -2.3276 15 6 3.5674 2.9949 -2.2121 16 6 4.4665 2.8736 -3.4447 17 7 3.6802 3.1418 -4.6556 18 6 4.5402 3.1694 -5.8462 19 1 4.8610 2.1610 -6.1075 20 6 5.7647 4.0865 -5.6091 21 6 5.8944 4.8137 -6.9717 22 8 4.5237 5.0176 -7.3765 23 6 3.8017 3.8240 -7.0298 24 6 2.5961 2.1638 -4.8120 25 6 1.6403 2.2649 -3.6211 26 1 -0.3634 0.4352 -0.9309 27 1 -0.3634 -1.0238 0.0886 28 1 -0.3633 0.5887 0.8424 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.7862 1.8623 4.4487 32 1 1.3521 3.1224 -0.9713 33 1 2.8119 0.9802 -2.3464 34 1 3.1670 4.0070 -2.1530 35 1 4.1474 2.7794 -1.3148 36 1 4.8784 1.8657 -3.4949 37 1 5.2802 3.5954 -3.3729 38 1 5.5688 4.7969 -4.8060 39 1 6.6565 3.4971 -5.3962 40 1 6.4185 4.1866 -7.6930 41 1 6.4048 5.7690 -6.8498 42 1 3.7845 3.1413 -7.8793 43 1 2.7825 4.0765 -6.7368 44 1 3.0167 1.1591 -4.8558 45 1 2.0514 2.3696 -5.7334 46 1 0.8443 1.5282 -3.7297 47 1 1.2086 3.2651 -3.5848 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594612959.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:35 Heat of formation + Delta-G solvation = -42.055870 kcal Electronic energy + Delta-G solvation = -23532.920722 eV Core-core repulsion = 20329.262927 eV Total energy + Delta-G solvation = -3203.657794 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -40.14694 -38.43216 -36.25617 -33.69715 -31.90502 -31.28937 -30.58624 -29.61369 -27.98055 -26.23759 -23.74759 -23.07953 -22.86360 -21.97531 -20.61052 -19.67886 -19.14096 -17.23268 -16.54353 -16.53086 -15.53823 -15.24270 -15.08377 -14.71572 -14.07649 -13.92902 -13.81260 -13.56871 -13.10114 -13.02698 -12.93580 -12.56751 -12.27876 -12.09890 -11.92505 -11.62449 -11.51319 -11.25356 -11.23766 -11.04508 -11.00442 -10.65340 -10.50999 -10.43252 -10.11555 -10.04435 -9.86774 -9.83301 -9.23161 -9.02728 -8.43513 -8.40692 -7.38108 -6.11757 -4.06673 3.25210 3.34534 3.36265 3.64718 3.74529 4.22646 4.39647 4.66227 4.83218 4.85723 4.89775 4.95574 5.07416 5.17041 5.22779 5.32388 5.34159 5.42621 5.46347 5.49463 5.55262 5.63906 5.71584 5.74447 5.86599 5.91769 5.99070 6.19313 6.22188 6.28979 6.36932 6.47678 6.57188 6.61279 6.65405 6.87364 6.98745 7.02352 7.06160 7.20543 7.32961 7.55317 7.69224 7.98810 8.39264 8.64613 8.97161 9.54099 11.01329 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028214 B = 0.003850 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.176244 B = 7271.139580 C = 7743.522607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.110 4.110 3 C 0.190 3.810 4 H -0.004 1.004 5 C -0.518 4.518 6 H 0.077 0.923 7 C 0.078 3.922 8 N -0.892 5.892 9 Si 0.860 3.140 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.252 1.252 13 N -0.671 5.671 14 C 0.088 3.912 15 C -0.146 4.146 16 C 0.059 3.941 17 N -0.526 5.526 18 C 0.049 3.951 19 H 0.053 0.947 20 C -0.153 4.153 21 C 0.048 3.952 22 O -0.375 6.375 23 C 0.056 3.944 24 C 0.055 3.945 25 C -0.102 4.102 26 H 0.050 0.950 27 H 0.017 0.983 28 H 0.067 0.933 29 H 0.021 0.979 30 H 0.051 0.949 31 H 0.263 0.737 32 H 0.340 0.660 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.029 0.971 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.058 0.942 41 H 0.093 0.907 42 H 0.056 0.944 43 H 0.095 0.905 44 H 0.031 0.969 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.753 0.601 -19.564 21.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.149 4.149 3 C 0.081 3.919 4 H 0.013 0.987 5 C -0.556 4.556 6 H 0.095 0.905 7 C -0.125 4.125 8 N -0.530 5.530 9 Si 0.688 3.312 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.176 1.176 13 N -0.300 5.300 14 C -0.023 4.023 15 C -0.185 4.185 16 C -0.069 4.069 17 N -0.251 5.251 18 C -0.060 4.060 19 H 0.071 0.929 20 C -0.190 4.190 21 C -0.029 4.029 22 O -0.294 6.294 23 C -0.021 4.021 24 C -0.073 4.073 25 C -0.140 4.140 26 H 0.069 0.931 27 H 0.036 0.964 28 H 0.086 0.914 29 H 0.040 0.960 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.158 0.842 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.111 0.889 42 H 0.074 0.926 43 H 0.113 0.887 44 H 0.049 0.951 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.011 0.704 -19.569 20.799 hybrid contribution 2.140 -1.145 0.592 2.498 sum 9.151 -0.441 -18.976 21.072 Atomic orbital electron populations 1.21456 0.95975 0.98097 1.02559 1.21838 0.96909 0.97986 0.98134 1.19437 0.92158 0.91549 0.88731 0.98673 1.21027 1.27796 1.17933 0.88856 0.90530 1.24861 0.96402 0.95592 0.95644 1.69952 1.39462 1.45765 0.97807 0.87319 0.84004 0.81979 0.77941 1.20720 1.21501 1.17633 1.60601 1.45774 1.18169 1.05500 1.21578 0.91132 0.97533 0.92096 1.22377 0.98339 1.01435 0.96398 1.22110 0.95972 0.99088 0.89776 1.62083 1.11498 1.50133 1.01436 1.23027 0.93037 0.98177 0.91714 0.92922 1.23306 0.97230 0.99314 0.99178 1.23505 0.84597 1.00761 0.94021 1.88887 1.20232 1.37393 1.82864 1.23214 0.97401 0.86842 0.94676 1.22165 0.92891 0.92770 0.99468 1.21545 0.97195 1.02707 0.92570 0.93119 0.96373 0.91438 0.95982 0.93045 0.92698 0.84152 0.91770 0.90996 0.91278 0.95263 0.90796 0.89001 0.90379 0.92405 0.88894 0.92602 0.88680 0.95105 0.90958 0.91023 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 9.52 37.16 0.35 -2.25 16 2 C -0.11 -2.42 5.21 -26.73 -0.14 -2.56 16 3 C 0.19 4.30 1.67 -68.87 -0.11 4.19 16 4 H 0.00 -0.10 5.58 -51.93 -0.29 -0.39 16 5 C -0.52 -13.86 7.74 -34.44 -0.27 -14.13 16 6 H 0.08 2.24 7.86 -52.49 -0.41 1.83 16 7 C 0.08 2.17 5.38 -17.82 -0.10 2.07 16 8 N -0.89 -26.61 13.96 55.43 0.77 -25.84 16 9 Si 0.86 20.86 25.90 -169.99 -4.40 16.46 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.25 -5.79 5.29 56.52 0.30 -5.49 16 13 N -0.67 -12.98 5.31 -100.83 -0.54 -13.52 16 14 C 0.09 1.41 2.36 -67.59 -0.16 1.25 16 15 C -0.15 -2.20 5.33 -26.64 -0.14 -2.35 16 16 C 0.06 0.74 5.12 -3.83 -0.02 0.72 16 17 N -0.53 -6.20 4.42 -224.85 -0.99 -7.20 16 18 C 0.05 0.50 2.80 -66.18 -0.19 0.31 16 19 H 0.05 0.50 8.11 -51.93 -0.42 0.08 16 20 C -0.15 -1.36 5.50 -24.73 -0.14 -1.50 16 21 C 0.05 0.41 7.72 38.21 0.29 0.71 16 22 O -0.38 -4.34 11.52 -35.23 -0.41 -4.74 16 23 C 0.06 0.56 6.92 37.73 0.26 0.82 16 24 C 0.06 0.64 5.28 -3.83 -0.02 0.62 16 25 C -0.10 -1.38 5.70 -26.65 -0.15 -1.54 16 26 H 0.05 1.01 7.72 -51.93 -0.40 0.61 16 27 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 1.60 7.11 -51.93 -0.37 1.23 16 29 H 0.02 0.44 7.71 -51.93 -0.40 0.04 16 30 H 0.05 1.19 4.68 -51.93 -0.24 0.95 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.34 6.76 7.95 -39.29 -0.31 6.45 16 33 H 0.06 1.10 7.46 -51.93 -0.39 0.72 16 34 H 0.07 1.12 8.11 -51.93 -0.42 0.70 16 35 H 0.07 1.16 7.24 -51.93 -0.38 0.78 16 36 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.86 6.06 -51.93 -0.31 0.54 16 38 H 0.09 0.93 6.97 -51.93 -0.36 0.56 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.10 1.01 7.14 -51.93 -0.37 0.64 16 44 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.07 0.74 6.95 -51.93 -0.36 0.37 16 46 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 345.12 15.07 5.20 5.20 Total: -1.00 -28.82 345.12 -9.37 -38.19 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -8.49 Total: 5.07 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -0.52 Total: -13.63 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: -0.76 Total: -46.55 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.41 Total: -4.74 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.40 Total: 16.46 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.82 -9.37 -38.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594612959.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.863 kcal (2) G-P(sol) polarization free energy of solvation -28.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds