Wall clock time and date at job start Tue Mar 31 2020 05:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47059 * 2 1 4 4 H 1.09009 * 109.49374 * 55.06255 * 3 2 1 5 5 C 1.53035 * 109.49903 * 295.00276 * 3 2 1 6 6 C 1.53039 * 109.54065 * 178.68527 * 5 3 2 7 7 C 1.53189 * 109.31396 * 61.35860 * 6 5 3 8 8 H 1.08997 * 109.58342 * 65.29848 * 7 6 5 9 9 C 1.53007 * 109.58433 * 185.58004 * 7 6 5 10 10 N 1.46923 * 108.77683 * 305.36698 * 7 6 5 11 11 C 1.34775 * 120.63262 * 233.58163 * 10 7 6 12 12 O 1.21280 * 120.00154 * 4.99116 * 11 10 7 13 13 C 1.50696 * 120.00005 * 184.98408 * 11 10 7 14 14 H 1.09001 * 109.47552 * 320.00299 * 13 11 10 15 15 N 1.46907 * 109.46959 * 200.00479 * 13 11 10 16 16 C 1.52999 * 109.47427 * 80.00557 * 13 11 10 17 17 C 1.52995 * 109.47334 * 184.99808 * 16 13 11 18 18 C 1.50704 * 109.47167 * 179.97438 * 17 16 13 19 19 H 1.08004 * 119.99527 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00107 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99988 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00038 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46832 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47350 * 119.99722 * 22 20 18 25 25 H 1.48502 * 109.46846 * 240.00119 * 22 20 18 26 26 C 1.46928 * 118.73717 * 53.60894 * 10 7 6 27 27 H 1.09002 * 109.47579 * 60.00227 * 1 2 3 28 28 H 1.09007 * 109.47391 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47445 * 299.99640 * 1 2 3 30 30 H 1.08996 * 109.47506 * 240.00325 * 2 1 3 31 31 H 1.09003 * 109.47121 * 120.00040 * 2 1 3 32 32 H 1.09001 * 109.45563 * 298.70283 * 5 3 2 33 33 H 1.09001 * 109.46400 * 58.65978 * 5 3 2 34 34 H 1.09003 * 109.49780 * 181.31836 * 6 5 3 35 35 H 1.09009 * 109.49471 * 301.37939 * 6 5 3 36 36 H 1.08996 * 109.46870 * 63.64056 * 9 7 6 37 37 H 1.09000 * 109.46583 * 183.64185 * 9 7 6 38 38 H 1.08996 * 109.46968 * 303.64042 * 9 7 6 39 39 H 1.00902 * 110.99467 * 176.04917 * 15 13 11 40 40 H 1.00894 * 110.99715 * 299.99964 * 15 13 11 41 41 H 1.09002 * 109.46517 * 305.00048 * 16 13 11 42 42 H 1.09004 * 109.47109 * 64.99760 * 16 13 11 43 43 H 1.09002 * 109.47515 * 299.99629 * 17 16 13 44 44 H 1.09004 * 109.47062 * 59.99923 * 17 16 13 45 45 H 0.97001 * 119.99568 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.58598 * 186.59703 * 26 10 7 47 47 H 1.09002 * 109.58801 * 66.17825 * 26 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6063 1.9817 0.8424 5 6 1.6353 2.1274 -1.3074 6 6 2.1166 3.5801 -1.2945 7 6 3.6445 3.6068 -1.1873 8 1 4.0814 3.1706 -2.0856 9 6 4.1227 5.0521 -1.0341 10 7 4.0497 2.8264 -0.0103 11 6 4.8494 3.3673 0.9301 12 8 5.1681 4.5351 0.8566 13 6 5.3476 2.5209 2.0731 14 1 4.5475 1.8640 2.4145 15 7 5.7719 3.3910 3.1781 16 6 6.5345 1.6773 1.6036 17 6 6.9612 0.7283 2.7252 18 6 8.1299 -0.1030 2.2625 19 1 8.5282 0.0318 1.2677 20 6 8.6900 -1.0364 3.1087 21 7 8.2046 -1.2009 4.3199 22 14 10.1392 -2.0663 2.5354 23 1 10.4931 -1.6909 1.1430 24 1 11.3027 -1.8225 3.4253 25 1 9.7732 -3.5048 2.5819 26 6 3.5669 1.4450 0.1219 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0889 1.6021 -2.1479 33 1 0.5503 2.1052 -1.4084 34 1 1.8077 4.0738 -2.2159 35 1 1.6824 4.0996 -0.4402 36 1 3.7411 5.4638 -0.0998 37 1 5.2124 5.0749 -1.0230 38 1 3.7553 5.6469 -1.8702 39 1 6.0498 2.8464 3.9808 40 1 6.5135 4.0099 2.8866 41 1 6.2441 1.0973 0.7276 42 1 7.3667 2.3326 1.3459 43 1 7.2517 1.3083 3.6012 44 1 6.1291 0.0730 2.9829 45 1 8.5984 -1.8579 4.9151 46 1 3.8566 1.0482 1.0949 47 1 3.9975 0.8303 -0.6686 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595257604.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:43 Heat of formation + Delta-G solvation = -72.993339 kcal Electronic energy + Delta-G solvation = -23657.126006 eV Core-core repulsion = 20452.126662 eV Total energy + Delta-G solvation = -3204.999344 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.72457 -39.01136 -37.30956 -35.60592 -34.91423 -33.74923 -31.72366 -31.32284 -28.73905 -27.99770 -25.91688 -25.11176 -23.95615 -22.87884 -21.82816 -20.96450 -19.98535 -18.61148 -17.98614 -17.27590 -16.57455 -16.37032 -15.88560 -15.80178 -15.67264 -15.50818 -14.95823 -14.73469 -14.58433 -14.18925 -14.10740 -13.93679 -13.63020 -13.45223 -13.15339 -13.09032 -12.95238 -12.77697 -12.60832 -12.48394 -12.13883 -12.01992 -11.84729 -11.81745 -11.69713 -11.58255 -11.42212 -11.28892 -11.13806 -10.57431 -10.10711 -9.58081 -9.49965 -8.22104 -6.32578 1.38097 1.39748 1.51477 1.62476 1.95583 2.39420 3.11597 3.45454 3.70516 3.73942 3.84450 3.91511 3.98260 4.06673 4.21072 4.23552 4.32134 4.39385 4.48761 4.61105 4.63829 4.69830 4.73925 4.76439 4.84450 4.87113 4.93967 5.03215 5.05789 5.08535 5.12393 5.22304 5.26883 5.34881 5.37366 5.45113 5.51134 5.57047 5.63394 5.73379 5.79254 6.05611 6.20261 6.42294 6.46315 6.82468 7.23373 7.36738 8.88903 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015978 B = 0.004530 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.015794 B = 6179.414650 C = 7143.765206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.096 4.096 4 H 0.064 0.936 5 C -0.110 4.110 6 C -0.123 4.123 7 C 0.137 3.863 8 H 0.079 0.921 9 C -0.126 4.126 10 N -0.605 5.605 11 C 0.524 3.476 12 O -0.556 6.556 13 C 0.078 3.922 14 H 0.102 0.898 15 N -0.829 5.829 16 C -0.117 4.117 17 C 0.033 3.967 18 C -0.543 4.543 19 H 0.053 0.947 20 C 0.008 3.992 21 N -0.926 5.926 22 Si 0.958 3.042 23 H -0.266 1.266 24 H -0.280 1.280 25 H -0.276 1.276 26 C 0.103 3.897 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.054 0.946 36 H 0.048 0.952 37 H 0.044 0.956 38 H 0.063 0.937 39 H 0.351 0.649 40 H 0.343 0.657 41 H 0.062 0.938 42 H 0.042 0.958 43 H 0.001 0.999 44 H 0.001 0.999 45 H 0.264 0.736 46 H 0.080 0.920 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.850 4.621 -12.514 20.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.115 4.115 4 H 0.083 0.917 5 C -0.148 4.148 6 C -0.161 4.161 7 C 0.034 3.966 8 H 0.097 0.903 9 C -0.183 4.183 10 N -0.338 5.338 11 C 0.312 3.688 12 O -0.435 6.435 13 C -0.037 4.037 14 H 0.119 0.881 15 N -0.360 5.360 16 C -0.157 4.157 17 C -0.005 4.005 18 C -0.581 4.581 19 H 0.071 0.929 20 C -0.191 4.191 21 N -0.566 5.566 22 Si 0.783 3.217 23 H -0.190 1.190 24 H -0.205 1.205 25 H -0.201 1.201 26 C -0.019 4.019 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.112 0.888 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.166 0.834 40 H 0.156 0.844 41 H 0.080 0.920 42 H 0.061 0.939 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.073 0.927 46 H 0.098 0.902 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.413 5.438 -12.420 21.289 hybrid contribution 1.985 -1.133 0.234 2.297 sum -14.428 4.305 -12.186 19.370 Atomic orbital electron populations 1.21778 0.94745 1.02006 1.02115 1.21498 0.96825 0.94720 1.02538 1.21504 0.93353 0.97424 0.99203 0.91736 1.21619 1.02026 0.94390 0.96718 1.21966 0.93150 0.98005 1.03026 1.21465 0.96013 0.92011 0.87072 0.90268 1.22029 1.00891 0.94543 1.00845 1.48146 1.48584 1.14817 1.22303 1.20643 0.77742 0.87386 0.83041 1.90681 1.59133 1.17443 1.76271 1.21478 0.98183 0.93036 0.91041 0.88055 1.58777 1.46775 1.22994 1.07490 1.22090 0.96003 0.97629 1.00000 1.18946 0.95076 0.93213 0.93224 1.21617 1.16197 1.20363 0.99971 0.92856 1.25840 0.99919 0.98393 0.94951 1.70069 1.42919 1.35755 1.07885 0.85500 0.79054 0.78537 0.78584 1.19048 1.20542 1.20145 1.22056 0.95269 0.81392 1.03232 0.91587 0.92294 0.93152 0.90969 0.92355 0.90860 0.89800 0.88752 0.92670 0.93271 0.93690 0.91826 0.83416 0.84360 0.91966 0.93939 0.98034 0.98022 0.92707 0.90203 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.67 71.98 0.70 -1.31 16 2 C -0.12 -1.89 5.41 30.59 0.17 -1.72 16 3 C -0.10 -1.74 2.34 -10.72 -0.03 -1.76 16 4 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 5 C -0.11 -1.62 4.95 30.62 0.15 -1.47 16 6 C -0.12 -2.11 5.37 30.67 0.16 -1.95 16 7 C 0.14 3.12 3.49 44.98 0.16 3.28 16 8 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 9 C -0.13 -3.31 7.60 71.98 0.55 -2.76 16 10 N -0.61 -16.50 2.97 -795.04 -2.36 -18.86 16 11 C 0.52 17.88 6.85 87.66 0.60 18.48 16 12 O -0.56 -21.50 11.65 -3.03 -0.04 -21.53 16 13 C 0.08 2.75 2.37 44.17 0.10 2.85 16 14 H 0.10 3.44 6.32 -2.39 -0.02 3.43 16 15 N -0.83 -29.84 8.94 -171.79 -1.54 -31.37 16 16 C -0.12 -4.74 4.67 30.59 0.14 -4.59 16 17 C 0.03 1.62 4.74 29.85 0.14 1.76 16 18 C -0.54 -30.02 9.11 25.60 0.23 -29.79 16 19 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 20 C 0.01 0.42 5.46 84.65 0.46 0.88 16 21 N -0.93 -54.32 13.29 21.45 0.28 -54.04 16 22 Si 0.96 43.39 29.54 68.60 2.03 45.42 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 25 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 26 C 0.10 2.39 5.03 86.36 0.43 2.83 16 27 H 0.07 0.75 6.54 -2.39 -0.02 0.73 16 28 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.08 1.00 6.51 -2.39 -0.02 0.99 16 34 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.05 1.09 8.14 -2.38 -0.02 1.08 16 36 H 0.05 1.52 6.74 -2.39 -0.02 1.50 16 37 H 0.04 1.41 6.76 -2.39 -0.02 1.39 16 38 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.35 12.75 7.55 -89.69 -0.68 12.08 16 40 H 0.34 12.54 8.58 -89.70 -0.77 11.77 16 41 H 0.06 2.41 7.59 -2.39 -0.02 2.39 16 42 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.00 0.07 6.87 -2.39 -0.02 0.06 16 44 H 0.00 0.07 8.14 -2.38 -0.02 0.06 16 45 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 46 H 0.08 2.08 5.42 -2.39 -0.01 2.07 16 47 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -64.04 355.53 1.86 -62.18 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: -0.50 Total: 33.47 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 3.98 Total: -15.27 kcal Atomic # 7 Polarization: -100.66 SS G_CDS: -3.61 Total: -104.27 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.04 Total: -21.53 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -64.04 1.86 -62.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595257604.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.809 kcal (2) G-P(sol) polarization free energy of solvation -64.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds