Wall clock time and date at job start Tue Mar 31 2020 05:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47142 * 2 1 4 4 H 1.09001 * 109.52602 * 54.92134 * 3 2 1 5 5 C 1.53038 * 109.49825 * 294.83851 * 3 2 1 6 6 C 1.53044 * 109.53975 * 178.68206 * 5 3 2 7 7 C 1.52762 * 109.38226 * 61.24229 * 6 5 3 8 8 H 1.08999 * 109.43207 * 65.42391 * 7 6 5 9 9 C 1.52996 * 109.51150 * 185.70699 * 7 6 5 10 10 N 1.46928 * 109.01049 * 305.58854 * 7 6 5 11 11 C 1.34771 * 120.63291 * 233.58882 * 10 7 6 12 12 O 1.21285 * 120.00145 * 353.92720 * 11 10 7 13 13 C 1.50704 * 119.99862 * 173.93636 * 11 10 7 14 14 H 1.09002 * 109.47343 * 39.99560 * 13 11 10 15 15 N 1.46904 * 109.47018 * 159.99680 * 13 11 10 16 16 C 1.52997 * 109.47038 * 279.99209 * 13 11 10 17 17 C 1.52999 * 109.47455 * 175.00386 * 16 13 11 18 18 C 1.50701 * 109.47142 * 180.02562 * 17 16 13 19 19 H 1.07996 * 120.00077 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99416 * 179.97438 * 18 17 16 21 21 N 1.31507 * 120.00572 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99545 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46982 * 60.00709 * 22 20 18 24 24 H 1.48506 * 109.47197 * 180.02562 * 22 20 18 25 25 H 1.48491 * 109.47520 * 300.00235 * 22 20 18 26 26 C 1.46931 * 118.73654 * 53.30772 * 10 7 6 27 27 H 1.09007 * 109.46929 * 299.99890 * 1 2 3 28 28 H 1.08997 * 109.47575 * 59.99528 * 1 2 3 29 29 H 1.09000 * 109.47321 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46929 * 240.00110 * 2 1 3 31 31 H 1.08997 * 109.47130 * 120.00175 * 2 1 3 32 32 H 1.09001 * 109.46623 * 298.70284 * 5 3 2 33 33 H 1.08996 * 109.45888 * 58.66753 * 5 3 2 34 34 H 1.08995 * 109.49862 * 181.31939 * 6 5 3 35 35 H 1.08999 * 109.49906 * 301.38638 * 6 5 3 36 36 H 1.09003 * 109.47387 * 185.39799 * 9 7 6 37 37 H 1.08998 * 109.47335 * 305.40139 * 9 7 6 38 38 H 1.08999 * 109.47134 * 65.39868 * 9 7 6 39 39 H 1.00903 * 110.99763 * 296.04341 * 15 13 11 40 40 H 1.00901 * 110.99917 * 59.99404 * 15 13 11 41 41 H 1.09003 * 109.47527 * 295.00577 * 16 13 11 42 42 H 1.09004 * 109.47038 * 55.00002 * 16 13 11 43 43 H 1.09004 * 109.46776 * 299.99796 * 17 16 13 44 44 H 1.08994 * 109.47319 * 59.99580 * 17 16 13 45 45 H 0.97001 * 120.00672 * 179.97438 * 21 20 18 46 46 H 1.08997 * 109.58747 * 66.43107 * 26 10 7 47 47 H 1.08996 * 109.58848 * 186.86017 * 26 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6047 1.9827 0.8407 5 6 1.6389 2.1260 -1.3092 6 6 2.1200 3.5788 -1.2964 7 6 3.6431 3.6074 -1.1825 8 1 4.0821 3.1719 -2.0800 9 6 4.1168 5.0538 -1.0263 10 7 4.0499 2.8263 -0.0064 11 6 4.8463 3.3683 0.9361 12 8 5.3237 4.4702 0.7662 13 6 5.1438 2.6051 2.2011 14 1 5.2956 1.5523 1.9631 15 7 6.3586 3.1462 2.8252 16 6 3.9675 2.7446 3.1695 17 6 4.2139 1.8703 4.4006 18 6 3.0550 2.0073 5.3541 19 1 2.2259 2.6537 5.1069 20 6 3.0533 1.3074 6.5420 21 7 4.0632 0.5208 6.8433 22 14 1.6171 1.4778 7.7243 23 1 0.3670 1.0436 7.0504 24 1 1.8562 0.6291 8.9193 25 1 1.4865 2.8963 8.1435 26 6 3.5668 1.4450 0.1258 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 2.0946 1.6000 -2.1481 33 1 0.5541 2.1038 -1.4129 34 1 1.8137 4.0717 -2.2190 35 1 1.6837 4.0991 -0.4437 36 1 5.2063 5.0830 -1.0413 37 1 3.7258 5.6548 -1.8472 38 1 3.7557 5.4541 -0.0789 39 1 7.1626 3.0076 2.2315 40 1 6.2431 4.1218 3.0554 41 1 3.8713 3.7860 3.4768 42 1 3.0500 2.4256 2.6750 43 1 4.3100 0.8289 4.0933 44 1 5.1314 2.1893 4.8951 45 1 4.0622 0.0287 7.6792 46 1 3.9994 0.8295 -0.6629 47 1 3.8537 1.0491 1.0999 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595257606.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:47 Heat of formation + Delta-G solvation = -55.290588 kcal Electronic energy + Delta-G solvation = -23935.376489 eV Core-core repulsion = 20731.144794 eV Total energy + Delta-G solvation = -3204.231695 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.64550 -37.99294 -35.62492 -34.56247 -33.00388 -32.55612 -30.48655 -30.07561 -27.64425 -26.35997 -24.52567 -23.65812 -23.08198 -21.45894 -20.26622 -20.15301 -18.62781 -16.86924 -16.45636 -15.99793 -15.31873 -15.26491 -14.94093 -14.70049 -14.40090 -14.06347 -13.77213 -13.46373 -13.38561 -13.14722 -12.74380 -12.33228 -12.18987 -12.14461 -11.96588 -11.84756 -11.54749 -11.32004 -11.15646 -10.98992 -10.88253 -10.83901 -10.65419 -10.54566 -10.52642 -10.29848 -9.80001 -9.54840 -9.23338 -8.97595 -8.48578 -8.29308 -8.08662 -5.93078 -3.95172 2.79653 3.09445 3.35898 3.40667 3.43012 4.49506 4.54283 4.59852 4.72404 4.80909 4.92129 5.01166 5.15932 5.18928 5.22452 5.34789 5.42266 5.44488 5.49379 5.50654 5.59683 5.68045 5.73059 5.77879 5.82507 5.86805 5.91450 5.93530 6.03478 6.09121 6.21621 6.28369 6.33576 6.40585 6.49867 6.67900 6.74583 7.10234 7.42239 7.59183 7.76364 7.83023 7.96921 8.14191 8.37421 8.49355 9.12494 9.67856 11.17754 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014054 B = 0.005457 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.885735 B = 5130.210926 C = 6424.320599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.104 4.104 4 H 0.081 0.919 5 C -0.114 4.114 6 C -0.132 4.132 7 C 0.141 3.859 8 H 0.064 0.936 9 C -0.136 4.136 10 N -0.607 5.607 11 C 0.486 3.514 12 O -0.547 6.547 13 C 0.075 3.925 14 H 0.096 0.904 15 N -0.808 5.808 16 C -0.094 4.094 17 C 0.033 3.967 18 C -0.522 4.522 19 H 0.050 0.950 20 C 0.059 3.941 21 N -0.892 5.892 22 Si 0.887 3.113 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.278 1.278 26 C 0.108 3.892 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.038 0.962 38 H 0.064 0.936 39 H 0.333 0.667 40 H 0.347 0.653 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.012 0.988 44 H 0.034 0.966 45 H 0.260 0.740 46 H 0.065 0.935 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.227 1.158 -18.830 19.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.123 4.123 4 H 0.100 0.900 5 C -0.151 4.151 6 C -0.170 4.170 7 C 0.038 3.962 8 H 0.082 0.918 9 C -0.193 4.193 10 N -0.341 5.341 11 C 0.273 3.727 12 O -0.426 6.426 13 C -0.041 4.041 14 H 0.113 0.887 15 N -0.335 5.335 16 C -0.132 4.132 17 C -0.004 4.004 18 C -0.560 4.560 19 H 0.069 0.931 20 C -0.142 4.142 21 N -0.532 5.532 22 Si 0.715 3.285 23 H -0.204 1.204 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.015 4.015 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.144 0.856 40 H 0.161 0.839 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.030 0.970 44 H 0.053 0.947 45 H 0.069 0.931 46 H 0.084 0.916 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.012 1.095 -18.178 18.458 hybrid contribution -0.911 0.595 -0.206 1.107 sum -3.922 1.690 -18.384 18.874 Atomic orbital electron populations 1.21792 0.95730 1.01534 1.01898 1.21494 0.96177 0.95548 1.02390 1.21574 0.95088 0.96873 0.98765 0.90048 1.21621 1.01067 0.95149 0.97309 1.21947 0.95350 0.97322 1.02423 1.21143 0.94229 0.92975 0.87828 0.91753 1.22172 1.02984 0.93236 1.00908 1.48276 1.49495 1.14025 1.22313 1.22639 0.77286 0.87245 0.85493 1.90675 1.52152 1.20878 1.78885 1.21900 0.94193 0.98415 0.89580 0.88658 1.59022 1.03209 1.24374 1.46919 1.21649 0.92892 1.01793 0.96869 1.18998 0.97574 0.93610 0.90233 1.21226 1.05067 1.26329 1.03375 0.93125 1.24970 0.95839 0.95437 0.97942 1.69956 1.30452 1.28749 1.24012 0.86742 0.83053 0.78026 0.80645 1.20379 1.21320 1.20344 1.21916 0.94103 0.82137 1.03380 0.92389 0.92857 0.92840 0.92109 0.91028 0.92060 0.91425 0.91111 0.91408 0.90490 0.94273 0.91702 0.85563 0.83919 0.93020 0.92833 0.96990 0.94732 0.93055 0.91637 0.88462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.67 37.16 0.36 -1.09 16 2 C -0.12 -1.18 5.40 -26.74 -0.14 -1.32 16 3 C -0.10 -1.14 2.34 -90.50 -0.21 -1.35 16 4 H 0.08 1.07 8.05 -51.93 -0.42 0.65 16 5 C -0.11 -1.08 4.96 -26.69 -0.13 -1.21 16 6 C -0.13 -1.37 5.35 -26.83 -0.14 -1.51 16 7 C 0.14 1.69 3.47 -67.82 -0.24 1.46 16 8 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 9 C -0.14 -1.79 7.60 37.16 0.28 -1.51 16 10 N -0.61 -8.19 2.98 -165.47 -0.49 -8.68 16 11 C 0.49 7.81 6.73 -10.99 -0.07 7.73 16 12 O -0.55 -9.75 11.83 5.55 0.07 -9.69 16 13 C 0.07 1.28 2.29 -68.86 -0.16 1.12 16 14 H 0.10 1.56 6.52 -51.93 -0.34 1.22 16 15 N -0.81 -13.83 8.44 -5.65 -0.05 -13.88 16 16 C -0.09 -1.90 4.54 -26.73 -0.12 -2.03 16 17 C 0.03 0.84 4.86 -27.88 -0.14 0.70 16 18 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 19 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 22 Si 0.89 21.70 29.54 -169.99 -5.02 16.67 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 26 C 0.11 1.27 5.17 -3.70 -0.02 1.25 16 27 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 28 H 0.05 0.45 6.54 -51.93 -0.34 0.11 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.59 6.51 -51.93 -0.34 0.26 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 1.14 6.54 -51.93 -0.34 0.80 16 37 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 1.01 6.96 -51.93 -0.36 0.64 16 39 H 0.33 4.97 9.06 -39.29 -0.36 4.61 16 40 H 0.35 6.02 8.58 -39.29 -0.34 5.69 16 41 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.05 1.04 7.34 -51.93 -0.38 0.66 16 43 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.03 0.96 7.75 -51.93 -0.40 0.56 16 45 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 46 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.10 1.27 5.09 -51.93 -0.26 1.01 16 LS Contribution 357.07 15.07 5.38 5.38 Total: -1.00 -30.73 357.07 -9.01 -39.75 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -8.49 Total: 7.64 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -1.14 Total: -11.13 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.20 Total: -48.62 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.07 Total: -9.69 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.73 -9.01 -39.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595257606.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.543 kcal (2) G-P(sol) polarization free energy of solvation -30.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds