Wall clock time and date at job start Tue Mar 31 2020 05:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47418 * 2 1 4 4 H 1.08996 * 109.58221 * 73.21936 * 3 2 1 5 5 C 1.53191 * 109.58865 * 312.93535 * 3 2 1 6 6 C 1.53034 * 109.31381 * 185.57338 * 5 3 2 7 7 C 1.53047 * 109.53515 * 61.36752 * 6 5 3 8 8 C 1.53185 * 109.31199 * 298.63185 * 7 6 5 9 9 H 1.08996 * 109.59170 * 294.70741 * 8 7 6 10 10 C 1.53004 * 109.58450 * 174.42195 * 8 7 6 11 11 N 1.46926 * 108.77536 * 54.63985 * 8 7 6 12 12 C 1.34776 * 120.63359 * 126.39188 * 11 8 7 13 13 O 1.21281 * 119.99727 * 334.45361 * 12 11 8 14 14 C 1.50701 * 120.00090 * 154.45367 * 12 11 8 15 15 H 1.09007 * 109.47062 * 64.97067 * 14 12 11 16 16 N 1.46897 * 109.46985 * 184.96396 * 14 12 11 17 17 C 1.52997 * 109.47382 * 304.96863 * 14 12 11 18 18 C 1.53000 * 109.47411 * 173.88173 * 17 14 12 19 19 C 1.50696 * 109.47206 * 179.97438 * 18 17 14 20 20 H 1.08007 * 120.00021 * 0.02562 * 19 18 17 21 21 C 1.37872 * 120.00064 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00242 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 119.99894 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47238 * 90.00175 * 23 21 19 25 25 H 1.48504 * 109.47508 * 209.99757 * 23 21 19 26 26 H 1.48499 * 109.47284 * 330.00192 * 23 21 19 27 27 H 1.08998 * 109.46919 * 65.37007 * 1 2 3 28 28 H 1.08994 * 109.47319 * 185.37305 * 1 2 3 29 29 H 1.09002 * 109.46960 * 305.37723 * 1 2 3 30 30 H 1.09009 * 109.46674 * 240.00244 * 2 1 3 31 31 H 1.08994 * 109.47419 * 120.00543 * 2 1 3 32 32 H 1.08997 * 109.49860 * 305.52953 * 5 3 2 33 33 H 1.09007 * 109.49711 * 65.58855 * 5 3 2 34 34 H 1.09002 * 109.46372 * 181.38439 * 6 5 3 35 35 H 1.09000 * 109.46280 * 301.36348 * 6 5 3 36 36 H 1.09002 * 109.49836 * 58.59043 * 7 6 5 37 37 H 1.09002 * 109.49612 * 178.68092 * 7 6 5 38 38 H 1.08999 * 109.47093 * 63.94435 * 10 8 7 39 39 H 1.09004 * 109.46678 * 183.94343 * 10 8 7 40 40 H 1.08994 * 109.47070 * 303.93891 * 10 8 7 41 41 H 1.00893 * 111.00585 * 296.04498 * 16 14 12 42 42 H 1.00910 * 110.99851 * 60.00683 * 16 14 12 43 43 H 1.09000 * 109.46962 * 293.88260 * 17 14 12 44 44 H 1.09006 * 109.46932 * 53.88140 * 17 14 12 45 45 H 1.09003 * 109.46623 * 299.99972 * 18 17 14 46 46 H 1.09000 * 109.46749 * 59.99797 * 18 17 14 47 47 H 0.96994 * 120.00291 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.8823 1.8857 0.9832 5 6 1.2844 2.2545 -1.0566 6 6 1.8925 3.6558 -1.1485 7 6 3.3580 3.5506 -1.5770 8 6 4.1371 2.7534 -0.5263 9 1 4.1547 3.3062 0.4129 10 6 5.5693 2.5251 -1.0139 11 7 3.4725 1.4584 -0.3266 12 6 4.1637 0.3070 -0.4407 13 8 5.1602 0.2638 -1.1307 14 6 3.6982 -0.9267 0.2889 15 1 2.7317 -1.2396 -0.1062 16 7 4.6769 -2.0058 0.1000 17 6 3.5630 -0.6163 1.7810 18 6 2.9466 -1.8190 2.4984 19 6 2.8140 -1.5134 3.9680 20 1 3.1366 -0.5568 4.3520 21 6 2.2799 -2.4545 4.8224 22 7 2.1636 -2.1877 6.1049 23 14 1.7212 -4.1086 4.1582 24 1 2.8527 -5.0693 4.2068 25 1 0.6004 -4.6217 4.9863 26 1 1.2666 -3.9501 2.7534 27 1 -0.3633 0.4283 -0.9342 28 1 -0.3633 -1.0231 0.0962 29 1 -0.3633 0.5950 0.8379 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.3660 1.7583 -2.0237 33 1 0.2343 2.3308 -0.7744 34 1 1.3410 4.2437 -1.8822 35 1 1.8332 4.1420 -0.1747 36 1 3.4201 3.0424 -2.5393 37 1 3.7839 4.5501 -1.6649 38 1 6.0789 3.4842 -1.1065 39 1 6.1013 1.8987 -0.2978 40 1 5.5480 2.0297 -1.9845 41 1 4.7370 -2.2736 -0.8709 42 1 5.5819 -1.7400 0.4585 43 1 4.5477 -0.4090 2.1997 44 1 2.9208 0.2544 1.9141 45 1 1.9618 -2.0262 2.0796 46 1 3.5887 -2.6896 2.3651 47 1 1.7875 -2.8496 6.7059 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595259784.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:09 Heat of formation + Delta-G solvation = 1.057112 kcal Electronic energy + Delta-G solvation = -24615.970523 eV Core-core repulsion = 21414.182248 eV Total energy + Delta-G solvation = -3201.788275 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.16095 -37.68941 -36.81158 -33.93801 -32.93543 -32.70343 -30.85917 -30.38848 -27.56211 -26.54615 -25.03019 -24.17952 -22.22046 -21.20773 -20.88415 -19.75537 -19.06065 -16.89769 -16.25907 -16.11733 -15.87968 -15.53948 -14.77970 -14.43944 -14.34931 -13.94580 -13.91466 -13.55348 -13.39396 -12.90688 -12.63281 -12.61722 -12.44796 -12.34395 -12.13395 -11.73511 -11.52114 -11.30708 -11.28917 -11.04525 -10.90115 -10.81157 -10.63754 -10.31756 -10.04935 -9.91650 -9.86373 -9.59863 -9.37616 -9.09482 -8.55090 -8.48039 -8.13240 -6.00494 -3.98095 2.67651 3.07952 3.36588 3.43439 3.48185 4.50136 4.50423 4.60994 4.67546 4.81392 4.86940 4.98685 5.10063 5.14788 5.20913 5.34719 5.37311 5.41777 5.50025 5.53020 5.60322 5.67500 5.71233 5.71857 5.80398 5.83375 5.86839 5.92735 6.05144 6.11261 6.22257 6.25539 6.30825 6.35236 6.42006 6.52065 6.76994 6.85336 7.34080 7.38830 7.54523 7.61707 7.73775 7.85927 8.30715 8.56778 9.04153 9.62645 11.12957 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020047 B = 0.005388 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.396829 B = 5195.899442 C = 5670.282932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.184 4.184 3 C 0.149 3.851 4 H 0.079 0.921 5 C -0.129 4.129 6 C -0.121 4.121 7 C -0.129 4.129 8 C 0.143 3.857 9 H 0.070 0.930 10 C -0.141 4.141 11 N -0.615 5.615 12 C 0.495 3.505 13 O -0.544 6.544 14 C 0.023 3.977 15 H 0.144 0.856 16 N -0.813 5.813 17 C -0.094 4.094 18 C -0.006 4.006 19 C -0.520 4.520 20 H 0.069 0.931 21 C 0.067 3.933 22 N -0.906 5.906 23 Si 0.880 3.120 24 H -0.277 1.277 25 H -0.291 1.291 26 H -0.264 1.264 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.129 0.871 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.045 0.955 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.336 0.664 42 H 0.340 0.660 43 H 0.055 0.945 44 H 0.068 0.932 45 H 0.014 0.986 46 H 0.030 0.970 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.562 10.177 -16.465 19.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.220 4.220 3 C 0.046 3.954 4 H 0.097 0.903 5 C -0.167 4.167 6 C -0.158 4.158 7 C -0.168 4.168 8 C 0.040 3.960 9 H 0.088 0.912 10 C -0.198 4.198 11 N -0.351 5.351 12 C 0.283 3.717 13 O -0.422 6.422 14 C -0.091 4.091 15 H 0.160 0.840 16 N -0.340 5.340 17 C -0.131 4.131 18 C -0.043 4.043 19 C -0.558 4.558 20 H 0.087 0.913 21 C -0.134 4.134 22 N -0.545 5.545 23 Si 0.708 3.292 24 H -0.203 1.203 25 H -0.217 1.217 26 H -0.188 1.188 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.147 0.853 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.148 0.852 42 H 0.153 0.847 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.032 0.968 46 H 0.048 0.952 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.547 9.624 -16.178 18.888 hybrid contribution 0.225 0.007 -0.740 0.773 sum -1.322 9.631 -16.918 19.512 Atomic orbital electron populations 1.21815 0.94864 1.02500 1.01586 1.23428 0.97314 0.95917 1.05331 1.21192 0.79200 0.96701 0.98276 0.90264 1.22024 0.99710 0.95509 0.99457 1.21540 0.95624 0.96968 1.01715 1.21992 0.95564 1.00070 0.99152 1.21206 0.92951 0.83953 0.97895 0.91186 1.22156 0.93807 1.00115 1.03696 1.48181 1.09618 1.05441 1.71827 1.22454 0.83307 0.85946 0.79957 1.90638 1.28434 1.84674 1.38434 1.23580 0.99660 0.87205 0.98694 0.83972 1.59156 1.12845 1.38453 1.23533 1.21608 1.01438 1.00837 0.89266 1.19526 0.95397 0.93925 0.95487 1.21154 1.41160 1.02717 0.90765 0.91330 1.24999 0.95304 0.98417 0.94658 1.69920 1.46089 1.35360 1.03144 0.86772 0.78514 0.84560 0.79392 1.20302 1.21721 1.18825 0.92969 0.92089 0.92029 0.91055 0.85338 0.91716 0.90269 0.91855 0.91670 0.91671 0.91218 0.93642 0.91902 0.90627 0.85159 0.84705 0.92618 0.91355 0.96787 0.95204 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.97 37.16 0.33 -1.34 16 2 C -0.18 -2.35 3.32 -26.73 -0.09 -2.44 16 3 C 0.15 1.81 2.13 -67.60 -0.14 1.67 16 4 H 0.08 1.00 7.78 -51.93 -0.40 0.60 16 5 C -0.13 -1.26 4.40 -26.62 -0.12 -1.38 16 6 C -0.12 -1.09 5.88 -26.69 -0.16 -1.24 16 7 C -0.13 -1.28 5.37 -26.61 -0.14 -1.43 16 8 C 0.14 1.74 3.49 -67.60 -0.24 1.51 16 9 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 10 C -0.14 -1.83 7.65 37.16 0.28 -1.55 16 11 N -0.62 -8.32 2.81 -157.73 -0.44 -8.76 16 12 C 0.50 7.73 5.99 -10.99 -0.07 7.66 16 13 O -0.54 -9.37 12.33 5.56 0.07 -9.30 16 14 C 0.02 0.37 2.15 -68.87 -0.15 0.22 16 15 H 0.14 2.17 3.63 -65.21 -0.24 1.94 16 16 N -0.81 -13.05 8.35 -5.65 -0.05 -13.10 16 17 C -0.09 -1.78 3.71 -26.73 -0.10 -1.88 16 18 C -0.01 -0.14 3.72 -27.88 -0.10 -0.24 16 19 C -0.52 -14.49 9.66 -34.44 -0.33 -14.82 16 20 H 0.07 2.06 7.99 -52.48 -0.42 1.64 16 21 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 22 N -0.91 -27.78 13.96 55.43 0.77 -27.00 16 23 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 27 H 0.05 0.49 6.80 -51.93 -0.35 0.13 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.91 5.95 -51.92 -0.31 0.60 16 31 H 0.13 2.00 2.14 -51.93 -0.11 1.89 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.68 6.82 -51.92 -0.35 0.33 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.95 6.85 -51.93 -0.36 0.60 16 40 H 0.07 1.10 6.76 -51.93 -0.35 0.75 16 41 H 0.34 4.85 8.92 -39.30 -0.35 4.50 16 42 H 0.34 5.52 8.87 -39.29 -0.35 5.17 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.07 1.25 5.36 -51.93 -0.28 0.97 16 45 H 0.01 0.32 6.28 -51.93 -0.33 -0.01 16 46 H 0.03 0.71 7.22 -51.93 -0.37 0.34 16 47 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 338.70 15.07 5.10 5.10 Total: -1.00 -30.83 338.70 -8.30 -39.12 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -7.97 Total: 10.31 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -1.12 Total: -13.43 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.28 Total: -48.87 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.07 Total: -9.30 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.83 -8.30 -39.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595259784.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.180 kcal (2) G-P(sol) polarization free energy of solvation -30.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds