Wall clock time and date at job start Tue Mar 31 2020 05:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47176 * 2 1 4 4 H 1.09001 * 109.58809 * 55.00593 * 3 2 1 5 5 C 1.53188 * 109.58959 * 294.57248 * 3 2 1 6 6 C 1.53039 * 109.31619 * 185.57944 * 5 3 2 7 7 C 1.53039 * 109.53786 * 61.36556 * 6 5 3 8 8 C 1.53191 * 109.31406 * 298.63687 * 7 6 5 9 9 H 1.09001 * 109.70416 * 294.77448 * 8 7 6 10 10 C 1.52996 * 109.58459 * 174.42064 * 8 7 6 11 11 N 1.46923 * 108.77456 * 54.63554 * 8 7 6 12 12 C 1.34781 * 120.63460 * 126.41248 * 11 8 7 13 13 O 1.21274 * 120.00217 * 206.65921 * 12 11 8 14 14 C 1.50706 * 119.99363 * 26.65747 * 12 11 8 15 15 H 1.08995 * 109.47153 * 298.91658 * 14 12 11 16 16 N 1.46903 * 109.46573 * 178.91923 * 14 12 11 17 17 C 1.52997 * 109.47302 * 58.92134 * 14 12 11 18 18 C 1.52996 * 109.46957 * 185.39979 * 17 14 12 19 19 C 1.50709 * 109.46970 * 180.02562 * 18 17 14 20 20 H 1.07999 * 119.99494 * 359.97438 * 19 18 17 21 21 C 1.37867 * 119.99922 * 180.02562 * 19 18 17 22 22 N 1.31519 * 120.00215 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00059 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.46894 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47181 * 119.99973 * 23 21 19 26 26 H 1.48501 * 109.46986 * 239.99810 * 23 21 19 27 27 H 1.09000 * 109.47087 * 65.06884 * 1 2 3 28 28 H 1.08998 * 109.47465 * 185.06980 * 1 2 3 29 29 H 1.09006 * 109.47287 * 305.07037 * 1 2 3 30 30 H 1.09005 * 109.46644 * 239.99778 * 2 1 3 31 31 H 1.08998 * 109.46622 * 120.00452 * 2 1 3 32 32 H 1.08994 * 109.50082 * 305.53848 * 5 3 2 33 33 H 1.09009 * 109.49361 * 65.62836 * 5 3 2 34 34 H 1.09007 * 109.45553 * 301.34463 * 6 5 3 35 35 H 1.09001 * 109.45219 * 181.38456 * 6 5 3 36 36 H 1.09002 * 109.49394 * 178.68359 * 7 6 5 37 37 H 1.08996 * 109.52196 * 58.60622 * 7 6 5 38 38 H 1.09009 * 109.47239 * 283.01504 * 10 8 7 39 39 H 1.09000 * 109.47722 * 43.01782 * 10 8 7 40 40 H 1.09006 * 109.47087 * 163.02018 * 10 8 7 41 41 H 1.00899 * 110.99871 * 176.04563 * 16 14 12 42 42 H 1.00901 * 110.99851 * 300.00065 * 16 14 12 43 43 H 1.09000 * 109.47027 * 305.40339 * 17 14 12 44 44 H 1.08998 * 109.47112 * 65.39610 * 17 14 12 45 45 H 1.09000 * 109.47258 * 299.99314 * 18 17 14 46 46 H 1.09000 * 109.47001 * 59.99984 * 18 17 14 47 47 H 0.97003 * 120.00347 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6065 1.9833 0.8413 5 6 1.6454 2.1267 -1.3125 6 6 2.2757 3.5202 -1.3663 7 6 3.8004 3.3942 -1.3268 8 6 4.2195 2.7242 -0.0144 9 1 3.9659 3.3708 0.8256 10 6 5.7280 2.4689 -0.0279 11 7 3.5049 1.4469 0.1137 12 6 4.1802 0.3011 0.3320 13 8 3.7114 -0.7573 -0.0297 14 6 5.5178 0.3352 1.0254 15 1 6.2175 0.9279 0.4362 16 7 6.0320 -1.0338 1.1649 17 6 5.3580 0.9636 2.4112 18 6 6.7339 1.1217 3.0612 19 6 6.5765 1.7402 4.4265 20 1 5.5933 1.9953 4.7935 21 6 7.6875 1.9812 5.2064 22 7 8.8848 1.6709 4.7591 23 14 7.4924 2.7484 6.8984 24 1 6.0535 3.0005 7.1646 25 1 8.0308 1.8223 7.9269 26 1 8.2380 4.0316 6.9489 27 1 -0.3633 0.4332 -0.9319 28 1 -0.3634 -1.0236 0.0908 29 1 -0.3634 0.5905 0.8411 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5139 0.8900 32 1 2.0024 1.5331 -2.1540 33 1 0.5602 2.2160 -1.3642 34 1 1.9373 4.1051 -0.5110 35 1 1.9763 4.0187 -2.2883 36 1 4.2491 4.3856 -1.3887 37 1 4.1378 2.7889 -2.1682 38 1 5.9442 1.6017 -0.6520 39 1 6.2409 3.3427 -0.4298 40 1 6.0736 2.2802 0.9885 41 1 6.9567 -1.0333 1.5688 42 1 5.4006 -1.6036 1.7077 43 1 4.8872 1.9420 2.3144 44 1 4.7345 0.3204 3.0321 45 1 7.2046 0.1434 3.1581 46 1 7.3574 1.7650 2.4402 47 1 9.6666 1.8408 5.3077 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595259785.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:12 Heat of formation + Delta-G solvation = -7.760785 kcal Electronic energy + Delta-G solvation = -24290.575773 eV Core-core repulsion = 21088.405125 eV Total energy + Delta-G solvation = -3202.170648 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.89599 -37.49917 -36.51828 -34.23475 -32.94124 -32.72445 -30.68963 -29.85128 -27.52804 -26.65485 -24.87044 -23.73146 -22.54586 -21.08055 -20.82422 -20.02746 -18.98107 -16.63806 -16.23058 -15.88410 -15.62103 -15.03684 -14.87450 -14.52959 -14.40754 -13.86797 -13.56700 -13.29685 -13.21977 -13.13452 -12.85952 -12.78465 -12.51311 -12.17573 -11.87583 -11.71916 -11.36995 -11.27875 -11.14912 -11.01611 -10.94098 -10.69828 -10.63017 -10.57803 -10.47212 -10.09297 -9.73054 -9.63157 -9.22498 -8.85163 -8.44789 -8.24554 -8.02917 -6.09474 -4.12437 2.90956 3.15997 3.24950 3.33290 3.36885 4.38405 4.56409 4.69133 4.72854 4.92810 5.01828 5.15611 5.20917 5.24303 5.26940 5.28227 5.34941 5.40996 5.55417 5.57575 5.68113 5.74553 5.79281 5.82070 5.83519 5.87836 5.92147 5.98504 6.09363 6.09923 6.25093 6.30232 6.34633 6.37798 6.53189 6.59541 6.87040 6.91844 7.49805 7.54561 7.61910 7.80664 7.88062 7.97990 8.30824 8.56150 8.93777 9.52683 11.01302 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019571 B = 0.004609 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.365158 B = 6073.574718 C = 6288.340268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C 0.151 3.849 4 H 0.067 0.933 5 C -0.130 4.130 6 C -0.120 4.120 7 C -0.129 4.129 8 C 0.148 3.852 9 H 0.076 0.924 10 C -0.203 4.203 11 N -0.623 5.623 12 C 0.532 3.468 13 O -0.521 6.521 14 C 0.015 3.985 15 H 0.150 0.850 16 N -0.829 5.829 17 C -0.139 4.139 18 C 0.024 3.976 19 C -0.522 4.522 20 H 0.054 0.946 21 C 0.059 3.941 22 N -0.892 5.892 23 Si 0.890 3.110 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.283 1.283 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.108 0.892 41 H 0.350 0.650 42 H 0.336 0.664 43 H 0.061 0.939 44 H 0.048 0.952 45 H 0.017 0.983 46 H 0.019 0.981 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.348 3.299 -12.111 17.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C 0.048 3.952 4 H 0.085 0.915 5 C -0.168 4.168 6 C -0.157 4.157 7 C -0.167 4.167 8 C 0.045 3.955 9 H 0.094 0.906 10 C -0.259 4.259 11 N -0.360 5.360 12 C 0.322 3.678 13 O -0.396 6.396 14 C -0.099 4.099 15 H 0.166 0.834 16 N -0.360 5.360 17 C -0.179 4.179 18 C -0.013 4.013 19 C -0.560 4.560 20 H 0.072 0.928 21 C -0.142 4.142 22 N -0.531 5.531 23 Si 0.718 3.282 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.209 1.209 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.127 0.873 41 H 0.165 0.835 42 H 0.148 0.852 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.036 0.964 46 H 0.037 0.963 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.453 2.665 -13.053 18.236 hybrid contribution -0.059 0.792 2.139 2.282 sum -12.512 3.458 -10.915 16.960 Atomic orbital electron populations 1.21908 0.96670 1.01539 1.01205 1.21960 0.93979 0.94649 1.04785 1.21218 0.79764 0.97329 0.96861 0.91467 1.22013 1.00393 0.96295 0.98137 1.21523 0.95393 0.96916 1.01896 1.21989 0.96102 1.00845 0.97796 1.21073 0.92195 0.84900 0.97351 0.90636 1.23351 0.94423 1.02291 1.05860 1.48100 1.06065 1.07193 1.74676 1.20815 0.86882 0.82741 0.77402 1.90621 1.68791 1.31299 1.48875 1.23463 0.95319 0.92684 0.98385 0.83352 1.58840 1.07489 1.09906 1.59755 1.22436 1.02002 0.99935 0.93515 1.19124 0.89814 0.97152 0.95257 1.21212 0.92915 1.40856 1.01052 0.92760 1.24997 0.95319 0.95668 0.98237 1.69957 0.97872 1.47892 1.37425 0.86559 0.78187 0.79030 0.84382 1.19801 1.20978 1.20938 0.92952 0.92710 0.93144 0.89813 0.91131 0.91546 0.91105 0.91814 0.91914 0.90754 0.91530 0.90653 0.91259 0.87346 0.83489 0.85181 0.92082 0.93298 0.96442 0.96250 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.56 37.16 0.36 -1.29 16 2 C -0.12 -1.57 3.85 -26.74 -0.10 -1.67 16 3 C 0.15 1.91 2.95 -67.60 -0.20 1.71 16 4 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 5 C -0.13 -1.34 4.99 -26.61 -0.13 -1.47 16 6 C -0.12 -1.11 5.88 -26.69 -0.16 -1.26 16 7 C -0.13 -1.31 5.30 -26.61 -0.14 -1.45 16 8 C 0.15 1.85 2.52 -67.60 -0.17 1.68 16 9 H 0.08 0.95 7.94 -51.93 -0.41 0.54 16 10 C -0.20 -2.68 7.04 37.16 0.26 -2.41 16 11 N -0.62 -8.86 2.82 -157.73 -0.44 -9.30 16 12 C 0.53 9.04 5.85 -10.98 -0.06 8.98 16 13 O -0.52 -9.97 12.46 5.56 0.07 -9.90 16 14 C 0.02 0.26 2.16 -68.86 -0.15 0.11 16 15 H 0.15 2.45 3.26 -78.86 -0.26 2.19 16 16 N -0.83 -14.67 8.76 -5.65 -0.05 -14.72 16 17 C -0.14 -2.71 3.75 -26.73 -0.10 -2.81 16 18 C 0.02 0.56 4.58 -27.88 -0.13 0.43 16 19 C -0.52 -14.09 9.11 -34.44 -0.31 -14.40 16 20 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 22 N -0.89 -25.68 13.29 55.43 0.74 -24.95 16 23 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H 0.05 0.48 6.97 -51.93 -0.36 0.12 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 1.29 6.85 -51.93 -0.36 0.93 16 31 H 0.07 1.13 6.77 -51.93 -0.35 0.78 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.63 6.99 -51.92 -0.36 0.26 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 1.03 5.73 -51.92 -0.30 0.73 16 39 H 0.07 0.78 8.03 -51.93 -0.42 0.36 16 40 H 0.11 1.71 2.98 -51.93 -0.15 1.55 16 41 H 0.35 6.19 7.57 -39.29 -0.30 5.90 16 42 H 0.34 5.99 8.82 -39.29 -0.35 5.65 16 43 H 0.06 1.15 5.97 -51.93 -0.31 0.84 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.02 0.44 6.88 -51.93 -0.36 0.08 16 46 H 0.02 0.48 7.25 -51.93 -0.38 0.10 16 47 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 342.53 15.07 5.16 5.16 Total: -1.00 -29.63 342.53 -8.69 -38.32 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -8.01 Total: 11.65 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -1.14 Total: -12.32 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 0.24 Total: -48.97 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.07 Total: -9.90 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.63 -8.69 -38.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595259785.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.564 kcal (2) G-P(sol) polarization free energy of solvation -29.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds