Wall clock time and date at job start Tue Mar 31 2020 05:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47328 * 2 1 4 4 H 1.09000 * 109.47070 * 54.99640 * 3 2 1 5 5 C 1.53002 * 109.46715 * 294.99883 * 3 2 1 6 6 C 1.52993 * 109.47503 * 175.00162 * 3 2 1 7 7 H 1.08999 * 109.47004 * 59.99290 * 6 3 2 8 8 C 1.53007 * 109.46779 * 300.00112 * 6 3 2 9 9 N 1.46499 * 109.47617 * 179.97438 * 6 3 2 10 10 C 1.34773 * 120.00045 * 205.27281 * 9 6 3 11 11 O 1.21588 * 119.99966 * 354.72079 * 10 9 6 12 12 N 1.34775 * 119.99529 * 174.71850 * 10 9 6 13 13 C 1.46923 * 120.63669 * 5.03831 * 12 10 9 14 14 C 1.53191 * 108.77876 * 233.58417 * 13 12 10 15 15 C 1.53042 * 109.30936 * 305.36536 * 14 13 12 16 16 C 1.53038 * 109.53989 * 61.36381 * 15 14 13 17 17 H 1.08998 * 109.49964 * 58.58647 * 16 15 14 18 18 C 1.50705 * 109.49622 * 178.68078 * 16 15 14 19 19 H 1.07999 * 119.99680 * 0.02562 * 18 16 15 20 20 C 1.37870 * 119.99830 * 180.02562 * 18 16 15 21 21 N 1.31511 * 120.00441 * 359.97438 * 20 18 16 22 22 Si 1.86802 * 119.99879 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47315 * 59.99836 * 22 20 18 24 24 H 1.48502 * 109.47121 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46944 * 299.99847 * 22 20 18 26 26 C 1.46935 * 120.62794 * 184.75627 * 12 10 9 27 27 H 1.09000 * 109.47286 * 299.99962 * 1 2 3 28 28 H 1.09003 * 109.47394 * 60.00102 * 1 2 3 29 29 H 1.08996 * 109.47319 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46891 * 239.99673 * 2 1 3 31 31 H 1.09002 * 109.46673 * 119.99714 * 2 1 3 32 32 H 1.09000 * 109.47153 * 299.99706 * 5 3 2 33 33 H 1.09000 * 109.47420 * 60.00284 * 5 3 2 34 34 H 1.09001 * 109.47034 * 179.97438 * 5 3 2 35 35 H 1.08996 * 109.47477 * 59.99570 * 8 6 3 36 36 H 1.09002 * 109.46990 * 180.02562 * 8 6 3 37 37 H 1.08999 * 109.46681 * 299.99376 * 8 6 3 38 38 H 0.97001 * 119.99763 * 24.99742 * 9 6 3 39 39 H 1.09000 * 109.58442 * 353.37176 * 13 12 10 40 40 H 1.08998 * 109.59073 * 113.65073 * 13 12 10 41 41 H 1.09004 * 109.49670 * 65.31182 * 14 13 12 42 42 H 1.08996 * 109.49800 * 185.40992 * 14 13 12 43 43 H 1.09003 * 109.45781 * 181.38399 * 15 14 13 44 44 H 1.08993 * 109.45768 * 301.35234 * 15 14 13 45 45 H 0.96999 * 120.00212 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.58363 * 246.20783 * 26 12 10 47 47 H 1.09000 * 109.58469 * 6.62485 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1264 -1.3074 6 6 3.5648 1.4443 0.1257 7 1 3.9994 0.9052 -0.7161 8 6 3.9695 0.7602 1.4331 9 7 4.0533 2.8255 0.1251 10 6 5.3101 3.0956 -0.2795 11 8 6.0696 2.1861 -0.5523 12 7 5.7251 4.3738 -0.3817 13 6 4.8579 5.4791 0.0484 14 6 4.7219 6.4771 -1.1059 15 6 6.1153 6.9132 -1.5645 16 6 6.8930 5.6952 -2.0682 17 1 6.3479 5.2294 -2.8891 18 6 8.2530 6.1306 -2.5497 19 1 8.5351 7.1720 -2.5011 20 6 9.1371 5.1996 -3.0521 21 7 8.7938 3.9315 -3.1108 22 14 10.8232 5.7393 -3.6483 23 1 11.5656 6.3709 -2.5280 24 1 11.5772 4.5570 -4.1370 25 1 10.6672 6.7189 -4.7534 26 6 7.0558 4.6881 -0.9196 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0699 1.5874 -2.1492 33 1 0.5490 2.1252 -1.3970 34 1 1.9982 3.1542 -1.3073 35 1 3.6062 -0.2674 1.4331 36 1 5.0559 0.7619 1.5229 37 1 3.5350 1.2994 2.2748 38 1 3.4707 3.5460 0.4120 39 1 3.8746 5.0903 0.3130 40 1 5.2994 5.9750 0.9128 41 1 4.1972 6.0039 -1.9359 42 1 4.1603 7.3484 -0.7692 43 1 6.0210 7.6421 -2.3695 44 1 6.6486 7.3637 -0.7275 45 1 9.4159 3.2764 -3.4640 46 1 7.6742 5.1223 -0.1340 47 1 7.5231 3.7773 -1.2938 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595477102.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:47 Heat of formation + Delta-G solvation = -52.487708 kcal Electronic energy + Delta-G solvation = -23660.198968 eV Core-core repulsion = 20456.088815 eV Total energy + Delta-G solvation = -3204.110153 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.85175 -37.87049 -36.43261 -33.82376 -33.14981 -31.73964 -30.13460 -29.42663 -29.35893 -25.03694 -24.57127 -24.46024 -22.29645 -21.76519 -20.13017 -19.88703 -18.63596 -17.43805 -16.22102 -15.89706 -15.14223 -14.86078 -14.50754 -14.36346 -14.06097 -13.75349 -13.66905 -13.27722 -13.24202 -12.79590 -12.52451 -12.41106 -12.27768 -12.03740 -11.88996 -11.78793 -11.63263 -11.30985 -10.95316 -10.88028 -10.78811 -10.60983 -10.50642 -10.44068 -10.33231 -10.18684 -9.83149 -9.35106 -9.05954 -8.90982 -8.63069 -8.37901 -7.57083 -5.94430 -4.03450 3.29113 3.36446 3.40981 3.42291 3.94780 4.41350 4.49813 4.62176 4.76918 4.85487 5.16675 5.31189 5.34451 5.35599 5.38690 5.48828 5.52244 5.54068 5.65373 5.67412 5.79420 5.84786 5.89401 5.90134 5.96441 6.01503 6.09392 6.19384 6.27238 6.30350 6.34944 6.45328 6.62925 6.71235 6.85831 6.98753 7.03603 7.12995 7.39926 7.57522 7.80116 7.98028 8.11180 8.45346 8.68550 8.99866 9.35842 9.61865 11.10645 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024536 B = 0.004113 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.919615 B = 6806.635236 C = 7299.578888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.097 4.097 4 H 0.071 0.929 5 C -0.147 4.147 6 C 0.165 3.835 7 H 0.085 0.915 8 C -0.164 4.164 9 N -0.751 5.751 10 C 0.701 3.299 11 O -0.585 6.585 12 N -0.624 5.624 13 C 0.116 3.884 14 C -0.133 4.133 15 C -0.109 4.109 16 C 0.041 3.959 17 H 0.028 0.972 18 C -0.523 4.523 19 H 0.057 0.943 20 C 0.063 3.937 21 N -0.879 5.879 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.278 1.278 26 C 0.130 3.870 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.050 0.950 38 H 0.388 0.612 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.050 0.950 44 H 0.049 0.951 45 H 0.264 0.736 46 H 0.037 0.963 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.425 -3.159 8.248 18.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.117 4.117 4 H 0.089 0.911 5 C -0.205 4.205 6 C 0.060 3.940 7 H 0.103 0.897 8 C -0.223 4.223 9 N -0.410 5.410 10 C 0.403 3.597 11 O -0.462 6.462 12 N -0.360 5.360 13 C -0.008 4.008 14 C -0.171 4.171 15 C -0.147 4.147 16 C 0.021 3.979 17 H 0.046 0.954 18 C -0.561 4.561 19 H 0.075 0.925 20 C -0.140 4.140 21 N -0.516 5.516 22 Si 0.720 3.280 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 C 0.009 3.991 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.224 0.776 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.056 0.944 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -15.754 -4.020 7.961 18.104 hybrid contribution 0.606 0.725 -0.150 0.957 sum -15.148 -3.295 7.812 17.360 Atomic orbital electron populations 1.21811 0.95882 1.01418 1.01827 1.21608 0.95761 0.95827 1.02583 1.21435 0.94559 0.96887 0.98778 0.91077 1.21857 1.00716 1.00897 0.96988 1.20712 0.92312 0.82400 0.98619 0.89738 1.22258 1.02653 1.00045 0.97316 1.45405 1.13815 1.08682 1.73066 1.15955 0.81745 0.83672 0.78341 1.90907 1.54035 1.44251 1.56997 1.47782 1.19312 1.02754 1.66201 1.21469 0.93233 0.89036 0.97064 1.21943 0.99407 0.97771 0.98003 1.21610 0.93528 0.99906 0.99676 1.19048 0.95105 0.90412 0.93290 0.95378 1.21042 0.99179 0.93981 1.41917 0.92492 1.25049 0.98470 0.94989 0.95476 1.69889 1.35875 1.00833 1.45004 0.86668 0.84280 0.77970 0.79126 1.20277 1.21275 1.20339 1.22238 0.78564 1.03586 0.94663 0.92911 0.92483 0.92916 0.91659 0.91367 0.92469 0.92639 0.92487 0.91929 0.91796 0.93066 0.77621 0.92245 0.92289 0.92219 0.92445 0.93139 0.93246 0.92636 0.94432 0.86059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.67 37.16 0.36 -0.78 16 2 C -0.12 -1.05 5.19 -26.73 -0.14 -1.19 16 3 C -0.10 -0.98 2.02 -90.62 -0.18 -1.16 16 4 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 5 C -0.15 -1.54 8.79 37.16 0.33 -1.22 16 6 C 0.17 2.23 2.12 -67.93 -0.14 2.08 16 7 H 0.08 1.38 7.65 -51.93 -0.40 0.98 16 8 C -0.16 -2.05 9.14 37.16 0.34 -1.71 16 9 N -0.75 -11.46 4.30 -58.68 -0.25 -11.71 16 10 C 0.70 14.58 8.26 -86.92 -0.72 13.86 16 11 O -0.58 -14.87 15.46 5.29 0.08 -14.79 16 12 N -0.62 -12.81 2.97 -178.23 -0.53 -13.34 16 13 C 0.12 1.83 6.43 -3.71 -0.02 1.80 16 14 C -0.13 -2.14 6.08 -26.61 -0.16 -2.31 16 15 C -0.11 -2.20 5.10 -26.69 -0.14 -2.33 16 16 C 0.04 1.02 2.26 -91.43 -0.21 0.81 16 17 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 18 C -0.52 -14.33 8.56 -34.44 -0.29 -14.62 16 19 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 20 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 21 N -0.88 -26.02 11.41 55.43 0.63 -25.39 16 22 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 C 0.13 3.23 5.41 -3.48 -0.02 3.21 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.43 6.57 -51.93 -0.34 0.08 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.57 6.17 -51.93 -0.32 0.25 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.49 6.57 -51.93 -0.34 0.15 16 34 H 0.06 0.64 7.44 -51.93 -0.39 0.26 16 35 H 0.06 0.66 6.32 -51.93 -0.33 0.33 16 36 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.39 4.90 5.84 -40.82 -0.24 4.66 16 39 H 0.06 0.74 5.57 -51.93 -0.29 0.45 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.12 3.54 5.18 -51.93 -0.27 3.27 16 LS Contribution 356.65 15.07 5.37 5.37 Total: -1.00 -31.62 356.65 -9.18 -40.80 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -8.37 Total: 4.45 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -1.09 Total: -1.88 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.15 Total: -50.44 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.08 Total: -14.79 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.62 -9.18 -40.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595477102.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.687 kcal (2) G-P(sol) polarization free energy of solvation -31.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds