Wall clock time and date at job start Tue Mar 31 2020 05:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46806 * 2 1 4 4 H 1.08996 * 109.47290 * 54.99853 * 3 2 1 5 5 C 1.53002 * 109.47107 * 294.99716 * 3 2 1 6 6 C 1.53002 * 109.46897 * 174.99958 * 3 2 1 7 7 H 1.08999 * 109.46980 * 60.00314 * 6 3 2 8 8 C 1.53002 * 109.47419 * 299.99801 * 6 3 2 9 9 N 1.46504 * 109.46959 * 180.02562 * 6 3 2 10 10 C 1.34777 * 119.99949 * 205.00298 * 9 6 3 11 11 O 1.21589 * 119.99710 * 355.01699 * 10 9 6 12 12 N 1.34773 * 120.00089 * 175.02448 * 10 9 6 13 13 C 1.46931 * 120.63030 * 5.22322 * 12 10 9 14 14 C 1.53188 * 108.77661 * 126.37085 * 13 12 10 15 15 C 1.53039 * 109.31291 * 54.63291 * 14 13 12 16 16 C 1.53044 * 109.53956 * 298.63764 * 15 14 13 17 17 H 1.09007 * 109.49589 * 301.41068 * 16 15 14 18 18 C 1.50699 * 109.49648 * 181.35023 * 16 15 14 19 19 H 1.08005 * 120.00410 * 359.97438 * 18 16 15 20 20 C 1.37883 * 119.99849 * 179.97438 * 18 16 15 21 21 N 1.31508 * 120.00009 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 119.99772 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47210 * 60.00081 * 22 20 18 24 24 H 1.48506 * 109.46835 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47350 * 300.00017 * 22 20 18 26 26 C 1.46926 * 120.62992 * 184.94364 * 12 10 9 27 27 H 1.08997 * 109.47452 * 299.99932 * 1 2 3 28 28 H 1.09000 * 109.47387 * 60.00276 * 1 2 3 29 29 H 1.08999 * 109.47089 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47452 * 240.00068 * 2 1 3 31 31 H 1.09000 * 109.47387 * 119.99723 * 2 1 3 32 32 H 1.08999 * 109.47013 * 180.02562 * 5 3 2 33 33 H 1.08996 * 109.47158 * 300.00218 * 5 3 2 34 34 H 1.09002 * 109.47020 * 60.00263 * 5 3 2 35 35 H 1.09000 * 109.46886 * 300.00705 * 8 6 3 36 36 H 1.08999 * 109.46830 * 59.99931 * 8 6 3 37 37 H 1.08989 * 109.47085 * 180.02562 * 8 6 3 38 38 H 0.96996 * 119.99835 * 24.99912 * 9 6 3 39 39 H 1.09004 * 109.58634 * 246.15784 * 13 12 10 40 40 H 1.08999 * 109.58522 * 6.43858 * 13 12 10 41 41 H 1.08989 * 109.50075 * 174.58725 * 14 13 12 42 42 H 1.09004 * 109.49728 * 294.68523 * 14 13 12 43 43 H 1.09002 * 109.46151 * 58.65873 * 15 14 13 44 44 H 1.09005 * 109.46294 * 178.61295 * 15 14 13 45 45 H 0.96998 * 120.00189 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.58799 * 353.41707 * 26 12 10 47 47 H 1.08998 * 109.58556 * 113.84350 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5648 1.4444 0.1257 7 1 3.9994 0.9055 -0.7161 8 6 3.9696 0.7605 1.4331 9 7 4.0530 2.8257 0.1264 10 6 5.3117 3.0958 -0.2728 11 8 6.0708 2.1863 -0.5467 12 7 5.7289 4.3737 -0.3681 13 6 4.8633 5.4782 0.0675 14 6 5.6360 6.3459 1.0660 15 6 6.9554 6.7934 0.4326 16 6 7.8061 5.5654 0.1002 17 1 7.9922 4.9946 1.0101 18 6 9.1187 6.0084 -0.4929 19 1 9.3259 7.0607 -0.6206 20 6 10.0553 5.0704 -0.8724 21 7 9.8033 3.7891 -0.7164 22 14 11.6820 5.6196 -1.6083 23 1 12.4045 6.4728 -0.6309 24 1 12.5071 4.4276 -1.9305 25 1 11.4275 6.3948 -2.8489 26 6 7.0602 4.6886 -0.9039 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.9988 3.1541 -1.3076 33 1 2.0698 1.5876 -2.1492 34 1 0.5488 2.1253 -1.3970 35 1 3.5349 1.2995 2.2749 36 1 3.6063 -0.2672 1.4331 37 1 5.0558 0.7622 1.5228 38 1 3.4704 3.5459 0.4140 39 1 4.5773 6.0803 -0.7949 40 1 3.9698 5.0759 0.5448 41 1 5.0407 7.2217 1.3238 42 1 5.8426 5.7677 1.9667 43 1 6.7489 7.3503 -0.4813 44 1 7.4960 7.4312 1.1319 45 1 10.4623 3.1292 -0.9831 46 1 7.6169 3.7654 -1.0652 47 1 6.9569 5.2249 -1.8472 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595477111.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:50 Heat of formation + Delta-G solvation = -52.381173 kcal Electronic energy + Delta-G solvation = -23596.055487 eV Core-core repulsion = 20391.949954 eV Total energy + Delta-G solvation = -3204.105533 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.85346 -37.89438 -36.43928 -33.83119 -33.15507 -31.74197 -30.13332 -29.44889 -29.37347 -25.03017 -24.58030 -24.47634 -22.31102 -21.75656 -20.14959 -19.88341 -18.63556 -17.44041 -16.18708 -15.93019 -15.16278 -14.76705 -14.67731 -14.34330 -14.06863 -13.66919 -13.60172 -13.32913 -13.27679 -12.72282 -12.58715 -12.50182 -12.26317 -12.04743 -11.88265 -11.81969 -11.64871 -11.28520 -10.94455 -10.89077 -10.80997 -10.63053 -10.50348 -10.43672 -10.34080 -10.18179 -9.82653 -9.33611 -9.04127 -8.89734 -8.63985 -8.36695 -7.57054 -5.93213 -4.02713 3.29362 3.36622 3.41228 3.42575 3.93677 4.42083 4.50407 4.60344 4.74432 4.83474 5.14544 5.31281 5.32542 5.36193 5.36883 5.47015 5.50933 5.54366 5.65666 5.67163 5.78022 5.83539 5.87100 5.87714 5.93305 6.01387 6.08741 6.19527 6.23249 6.29203 6.35496 6.48810 6.63907 6.72655 6.86072 6.98735 7.04658 7.10963 7.42687 7.58660 7.80743 7.99215 8.12851 8.46415 8.68737 9.00799 9.36332 9.62537 11.11503 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026890 B = 0.003983 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.015799 B = 7028.420778 C = 7612.327053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.098 4.098 4 H 0.071 0.929 5 C -0.147 4.147 6 C 0.166 3.834 7 H 0.084 0.916 8 C -0.166 4.166 9 N -0.751 5.751 10 C 0.700 3.300 11 O -0.582 6.582 12 N -0.624 5.624 13 C 0.117 3.883 14 C -0.133 4.133 15 C -0.109 4.109 16 C 0.040 3.960 17 H 0.028 0.972 18 C -0.522 4.522 19 H 0.057 0.943 20 C 0.063 3.937 21 N -0.878 5.878 22 Si 0.892 3.108 23 H -0.278 1.278 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.129 3.871 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.388 0.612 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.049 0.951 44 H 0.050 0.950 45 H 0.264 0.736 46 H 0.123 0.877 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.840 -2.853 2.498 19.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.117 4.117 4 H 0.090 0.910 5 C -0.204 4.204 6 C 0.061 3.939 7 H 0.102 0.898 8 C -0.224 4.224 9 N -0.410 5.410 10 C 0.402 3.598 11 O -0.459 6.459 12 N -0.360 5.360 13 C -0.008 4.008 14 C -0.172 4.172 15 C -0.147 4.147 16 C 0.020 3.980 17 H 0.046 0.954 18 C -0.561 4.561 19 H 0.075 0.925 20 C -0.140 4.140 21 N -0.515 5.515 22 Si 0.720 3.280 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 C 0.009 3.991 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.224 0.776 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.141 0.859 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -18.164 -3.717 2.220 18.673 hybrid contribution 0.587 0.731 -0.175 0.953 sum -17.577 -2.986 2.045 17.946 Atomic orbital electron populations 1.21811 0.95885 1.01433 1.01812 1.21608 0.95744 0.95815 1.02615 1.21443 0.94624 0.96902 0.98746 0.91014 1.21852 1.00730 1.00804 0.97001 1.20704 0.92199 0.82382 0.98662 0.89827 1.22267 1.02905 0.99971 0.97274 1.45420 1.13734 1.08713 1.73139 1.15968 0.81671 0.83695 0.78500 1.90921 1.53846 1.44179 1.56988 1.47773 1.19142 1.02876 1.66248 1.21464 0.92411 0.89435 0.97473 1.21941 0.98233 0.98483 0.98504 1.21611 0.94168 0.99893 0.99038 1.18896 0.92582 0.90955 0.95528 0.95420 1.21035 0.99816 0.92840 1.42421 0.92498 1.25058 0.98365 0.94980 0.95624 1.69891 1.35079 0.99901 1.46621 0.86669 0.83793 0.77974 0.79614 1.20344 1.21281 1.20290 1.22061 0.78054 1.03758 0.95272 0.92875 0.92534 0.92904 0.91708 0.91293 0.92542 0.92579 0.92628 0.93024 0.91969 0.91594 0.77642 0.92321 0.92242 0.92422 0.92240 0.93251 0.93137 0.92638 0.85912 0.94430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.67 37.16 0.36 -0.74 16 2 C -0.12 -1.02 5.19 -26.73 -0.14 -1.16 16 3 C -0.10 -0.95 2.02 -90.61 -0.18 -1.14 16 4 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 5 C -0.15 -1.42 8.79 37.16 0.33 -1.09 16 6 C 0.17 2.22 2.12 -67.93 -0.14 2.07 16 7 H 0.08 1.32 7.65 -51.93 -0.40 0.92 16 8 C -0.17 -2.16 9.14 37.16 0.34 -1.82 16 9 N -0.75 -11.40 4.29 -58.67 -0.25 -11.65 16 10 C 0.70 14.53 8.26 -86.92 -0.72 13.82 16 11 O -0.58 -14.85 15.43 5.29 0.08 -14.77 16 12 N -0.62 -12.81 2.98 -178.77 -0.53 -13.34 16 13 C 0.12 1.83 6.39 -3.71 -0.02 1.81 16 14 C -0.13 -2.18 6.08 -26.61 -0.16 -2.34 16 15 C -0.11 -2.21 5.11 -26.69 -0.14 -2.34 16 16 C 0.04 1.00 2.23 -91.87 -0.21 0.79 16 17 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 18 C -0.52 -14.37 8.57 -34.44 -0.29 -14.66 16 19 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 20 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 21 N -0.88 -26.08 11.39 55.43 0.63 -25.45 16 22 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 C 0.13 3.21 5.39 -3.93 -0.02 3.19 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.40 6.57 -51.93 -0.34 0.06 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.58 6.17 -51.93 -0.32 0.25 16 32 H 0.06 0.58 7.45 -51.93 -0.39 0.19 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.45 6.57 -51.93 -0.34 0.11 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.67 6.32 -51.93 -0.33 0.35 16 37 H 0.06 1.09 8.10 -51.94 -0.42 0.67 16 38 H 0.39 4.87 5.88 -40.82 -0.24 4.63 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.74 5.64 -51.93 -0.29 0.45 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 46 H 0.12 3.58 5.11 -51.93 -0.27 3.32 16 47 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 356.56 15.07 5.37 5.37 Total: -1.00 -31.76 356.56 -9.19 -40.95 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -8.37 Total: 4.32 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -1.10 Total: -1.94 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.15 Total: -50.44 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: 0.08 Total: -14.77 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.76 -9.19 -40.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595477111.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.434 kcal (2) G-P(sol) polarization free energy of solvation -31.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds