Wall clock time and date at job start Tue Mar 31 2020 05:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46806 * 2 1 4 4 H 1.08996 * 109.47290 * 54.99853 * 3 2 1 5 5 C 1.53002 * 109.47107 * 294.99716 * 3 2 1 6 6 C 1.53002 * 109.46897 * 174.99958 * 3 2 1 7 7 H 1.08999 * 109.46980 * 60.00314 * 6 3 2 8 8 C 1.53002 * 109.47419 * 299.99801 * 6 3 2 9 9 N 1.46504 * 109.46959 * 180.02562 * 6 3 2 10 10 C 1.34777 * 119.99949 * 205.00298 * 9 6 3 11 11 O 1.21589 * 119.99710 * 355.01699 * 10 9 6 12 12 N 1.34773 * 120.00089 * 175.02448 * 10 9 6 13 13 C 1.46931 * 120.63030 * 5.22322 * 12 10 9 14 14 C 1.53188 * 108.77661 * 126.37085 * 13 12 10 15 15 C 1.53039 * 109.31291 * 54.63291 * 14 13 12 16 16 C 1.53044 * 109.53956 * 298.63764 * 15 14 13 17 17 H 1.09007 * 109.49589 * 301.41068 * 16 15 14 18 18 C 1.50699 * 109.49648 * 181.35023 * 16 15 14 19 19 H 1.08005 * 120.00410 * 359.97438 * 18 16 15 20 20 C 1.37883 * 119.99849 * 179.97438 * 18 16 15 21 21 N 1.31508 * 120.00009 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 119.99772 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47210 * 60.00081 * 22 20 18 24 24 H 1.48506 * 109.46835 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47350 * 300.00017 * 22 20 18 26 26 C 1.46926 * 120.62992 * 184.94364 * 12 10 9 27 27 H 1.08997 * 109.47452 * 299.99932 * 1 2 3 28 28 H 1.09000 * 109.47387 * 60.00276 * 1 2 3 29 29 H 1.08999 * 109.47089 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47452 * 240.00068 * 2 1 3 31 31 H 1.09000 * 109.47387 * 119.99723 * 2 1 3 32 32 H 1.08999 * 109.47013 * 180.02562 * 5 3 2 33 33 H 1.08996 * 109.47158 * 300.00218 * 5 3 2 34 34 H 1.09002 * 109.47020 * 60.00263 * 5 3 2 35 35 H 1.09000 * 109.46886 * 300.00705 * 8 6 3 36 36 H 1.08999 * 109.46830 * 59.99931 * 8 6 3 37 37 H 1.08989 * 109.47085 * 180.02562 * 8 6 3 38 38 H 0.96996 * 119.99835 * 24.99912 * 9 6 3 39 39 H 1.09004 * 109.58634 * 246.15784 * 13 12 10 40 40 H 1.08999 * 109.58522 * 6.43858 * 13 12 10 41 41 H 1.08989 * 109.50075 * 174.58725 * 14 13 12 42 42 H 1.09004 * 109.49728 * 294.68523 * 14 13 12 43 43 H 1.09002 * 109.46151 * 58.65873 * 15 14 13 44 44 H 1.09005 * 109.46294 * 178.61295 * 15 14 13 45 45 H 0.96998 * 120.00189 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.58799 * 353.41707 * 26 12 10 47 47 H 1.08998 * 109.58556 * 113.84350 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5648 1.4444 0.1257 7 1 3.9994 0.9055 -0.7161 8 6 3.9696 0.7605 1.4331 9 7 4.0530 2.8257 0.1264 10 6 5.3117 3.0958 -0.2728 11 8 6.0708 2.1863 -0.5467 12 7 5.7289 4.3737 -0.3681 13 6 4.8633 5.4782 0.0675 14 6 5.6360 6.3459 1.0660 15 6 6.9554 6.7934 0.4326 16 6 7.8061 5.5654 0.1002 17 1 7.9922 4.9946 1.0101 18 6 9.1187 6.0084 -0.4929 19 1 9.3259 7.0607 -0.6206 20 6 10.0553 5.0704 -0.8724 21 7 9.8033 3.7891 -0.7164 22 14 11.6820 5.6196 -1.6083 23 1 12.4045 6.4728 -0.6309 24 1 12.5071 4.4276 -1.9305 25 1 11.4275 6.3948 -2.8489 26 6 7.0602 4.6886 -0.9039 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.9988 3.1541 -1.3076 33 1 2.0698 1.5876 -2.1492 34 1 0.5488 2.1253 -1.3970 35 1 3.5349 1.2995 2.2749 36 1 3.6063 -0.2672 1.4331 37 1 5.0558 0.7622 1.5228 38 1 3.4704 3.5459 0.4140 39 1 4.5773 6.0803 -0.7949 40 1 3.9698 5.0759 0.5448 41 1 5.0407 7.2217 1.3238 42 1 5.8426 5.7677 1.9667 43 1 6.7489 7.3503 -0.4813 44 1 7.4960 7.4312 1.1319 45 1 10.4623 3.1292 -0.9831 46 1 7.6169 3.7654 -1.0652 47 1 6.9569 5.2249 -1.8472 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595477111.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:50 Heat of formation + Delta-G solvation = -71.667735 kcal Electronic energy + Delta-G solvation = -23596.891815 eV Core-core repulsion = 20391.949954 eV Total energy + Delta-G solvation = -3204.941861 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.38215 -39.13565 -37.94157 -35.45446 -34.71019 -33.41531 -31.65639 -30.86541 -30.19495 -27.02434 -26.12002 -25.31339 -23.56094 -23.27455 -21.51723 -21.15980 -20.12534 -18.99727 -18.19343 -17.35093 -16.59673 -16.27580 -15.93363 -15.76852 -15.25667 -15.17992 -14.87019 -14.68190 -14.45930 -14.22837 -14.11096 -13.90897 -13.52595 -13.37630 -12.95396 -12.84548 -12.68849 -12.65607 -12.48683 -12.29469 -12.24585 -12.22761 -11.85778 -11.62461 -11.58436 -11.42633 -11.31633 -11.15607 -10.93137 -10.79474 -10.50264 -10.08271 -9.22543 -8.08515 -6.26738 1.40800 1.42775 1.51141 1.84051 2.30220 2.42686 3.07900 3.20985 3.70301 3.96501 4.00773 4.08866 4.16912 4.29056 4.37788 4.42264 4.55590 4.60920 4.67341 4.73277 4.75866 4.80171 4.82526 4.85489 4.90051 4.99267 5.08691 5.11284 5.18634 5.20946 5.23426 5.27772 5.29423 5.34340 5.39235 5.52923 5.57237 5.57482 5.67991 5.72403 5.91395 6.00727 6.21425 6.37907 6.86811 7.20238 7.43301 7.75906 8.94144 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026890 B = 0.003983 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.015799 B = 7028.420778 C = 7612.327053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C -0.085 4.085 4 H 0.093 0.907 5 C -0.146 4.146 6 C 0.162 3.838 7 H 0.052 0.948 8 C -0.160 4.160 9 N -0.727 5.727 10 C 0.693 3.307 11 O -0.641 6.641 12 N -0.629 5.629 13 C 0.111 3.889 14 C -0.126 4.126 15 C -0.104 4.104 16 C 0.039 3.961 17 H -0.018 1.018 18 C -0.538 4.538 19 H 0.063 0.937 20 C 0.008 3.992 21 N -0.914 5.914 22 Si 0.959 3.041 23 H -0.268 1.268 24 H -0.290 1.290 25 H -0.266 1.266 26 C 0.144 3.856 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.039 0.961 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.021 0.979 38 H 0.405 0.595 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.047 0.953 43 H 0.058 0.942 44 H 0.050 0.950 45 H 0.259 0.741 46 H 0.074 0.926 47 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.802 -1.116 3.099 22.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.104 4.104 4 H 0.111 0.889 5 C -0.203 4.203 6 C 0.057 3.943 7 H 0.070 0.930 8 C -0.218 4.218 9 N -0.386 5.386 10 C 0.394 3.606 11 O -0.522 6.522 12 N -0.365 5.365 13 C -0.011 4.011 14 C -0.164 4.164 15 C -0.142 4.142 16 C 0.019 3.981 17 H 0.000 1.000 18 C -0.576 4.576 19 H 0.081 0.919 20 C -0.191 4.191 21 N -0.553 5.553 22 Si 0.784 3.216 23 H -0.193 1.193 24 H -0.215 1.215 25 H -0.191 1.191 26 C 0.021 3.979 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.040 0.960 38 H 0.244 0.756 39 H 0.098 0.902 40 H 0.117 0.883 41 H 0.123 0.877 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.092 0.908 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -21.200 -1.933 2.849 21.478 hybrid contribution 1.478 0.168 -0.340 1.526 sum -19.722 -1.765 2.508 19.959 Atomic orbital electron populations 1.21782 0.94320 1.02097 1.02369 1.21614 0.97013 0.94740 1.02420 1.21383 0.91166 0.98208 0.99659 0.88869 1.21859 1.02073 1.00145 0.96252 1.20891 0.94804 0.80873 0.97693 0.92998 1.22213 1.00074 1.01835 0.97710 1.45194 1.11683 1.10216 1.71487 1.16237 0.82838 0.83116 0.78384 1.90882 1.55900 1.46002 1.59420 1.47673 1.18343 1.04300 1.66161 1.21843 0.92630 0.88192 0.98482 1.21903 0.96680 1.00172 0.97607 1.21501 0.95500 0.97365 0.99841 1.18826 0.93202 0.92721 0.93319 1.00004 1.21502 1.01093 0.93088 1.41933 0.91907 1.25932 1.02160 0.94880 0.96158 1.70112 1.36016 1.01144 1.48011 0.85604 0.79329 0.77497 0.79202 1.19279 1.21549 1.19101 1.21446 0.80102 1.01159 0.95211 0.91969 0.92261 0.92308 0.92618 0.90943 0.92969 0.94172 0.90401 0.91079 0.89672 0.95980 0.75568 0.90234 0.88251 0.87659 0.93445 0.92338 0.93074 0.93245 0.90805 0.94909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.67 71.98 0.70 -0.98 16 2 C -0.12 -1.78 5.19 30.60 0.16 -1.62 16 3 C -0.09 -1.45 2.02 -10.79 -0.02 -1.47 16 4 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 5 C -0.15 -2.49 8.79 71.98 0.63 -1.86 16 6 C 0.16 4.27 2.12 44.99 0.10 4.37 16 7 H 0.05 1.72 7.65 -2.39 -0.02 1.70 16 8 C -0.16 -4.11 9.14 71.98 0.66 -3.45 16 9 N -0.73 -21.46 4.29 -457.80 -1.97 -23.43 16 10 C 0.69 29.59 8.26 179.06 1.48 31.07 16 11 O -0.64 -34.97 15.43 -4.00 -0.06 -35.03 16 12 N -0.63 -26.04 2.98 -837.75 -2.50 -28.54 16 13 C 0.11 3.15 6.39 86.36 0.55 3.71 16 14 C -0.13 -3.73 6.08 30.67 0.19 -3.54 16 15 C -0.10 -4.09 5.11 30.62 0.16 -3.94 16 16 C 0.04 2.01 2.23 -11.61 -0.03 1.99 16 17 H -0.02 -1.10 8.14 -2.38 -0.02 -1.12 16 18 C -0.54 -30.32 8.57 25.60 0.22 -30.10 16 19 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 20 C 0.01 0.47 5.30 84.66 0.45 0.92 16 21 N -0.91 -57.40 11.39 21.45 0.24 -57.16 16 22 Si 0.96 45.20 29.54 68.60 2.03 47.23 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 26 C 0.14 7.46 5.39 86.22 0.46 7.92 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 0.64 6.57 -2.39 -0.02 0.63 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 1.03 6.17 -2.39 -0.01 1.02 16 32 H 0.05 0.93 7.45 -2.39 -0.02 0.91 16 33 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.08 1.00 6.57 -2.39 -0.02 0.98 16 35 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 1.77 6.32 -2.39 -0.02 1.75 16 37 H 0.02 0.74 8.10 -2.39 -0.02 0.72 16 38 H 0.41 8.96 5.88 -92.71 -0.54 8.41 16 39 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.10 2.04 5.64 -2.39 -0.01 2.02 16 41 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.05 1.53 8.14 -2.39 -0.02 1.52 16 43 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 45 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 46 H 0.07 4.61 5.11 -2.39 -0.01 4.60 16 47 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -76.34 356.56 3.84 -72.51 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.39 Total: 21.41 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 5.70 Total: 3.01 kcal Atomic # 7 Polarization: -104.90 SS G_CDS: -4.22 Total: -109.12 kcal Atomic # 8 Polarization: -34.97 SS G_CDS: -0.06 Total: -35.03 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -76.34 3.84 -72.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595477111.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.841 kcal (2) G-P(sol) polarization free energy of solvation -76.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds