Wall clock time and date at job start Tue Mar 31 2020 05:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.47101 * 2 1 4 4 H 1.09003 * 109.46751 * 54.99937 * 3 2 1 5 5 C 1.52999 * 109.47030 * 295.00239 * 3 2 1 6 6 C 1.52999 * 109.46970 * 174.99935 * 3 2 1 7 7 H 1.08998 * 109.46952 * 304.99956 * 6 3 2 8 8 C 1.52997 * 109.46961 * 65.00088 * 6 3 2 9 9 N 1.46503 * 109.46626 * 185.00008 * 6 3 2 10 10 C 1.34777 * 119.99554 * 155.00253 * 9 6 3 11 11 O 1.21594 * 120.00056 * 354.89152 * 10 9 6 12 12 N 1.34781 * 120.00085 * 174.88904 * 10 9 6 13 13 C 1.46920 * 120.62558 * 5.04686 * 12 10 9 14 14 C 1.53193 * 108.77619 * 233.58073 * 13 12 10 15 15 C 1.53043 * 109.31390 * 305.37119 * 14 13 12 16 16 C 1.53039 * 109.53481 * 61.36162 * 15 14 13 17 17 H 1.08995 * 109.49822 * 58.58977 * 16 15 14 18 18 C 1.50709 * 109.49127 * 178.68528 * 16 15 14 19 19 H 1.07997 * 120.00081 * 35.06413 * 18 16 15 20 20 C 1.37883 * 119.99562 * 215.05752 * 18 16 15 21 21 N 1.31514 * 119.99622 * 174.98143 * 20 18 16 22 22 Si 1.86805 * 120.00015 * 354.98520 * 20 18 16 23 23 H 1.48498 * 109.46685 * 94.95041 * 22 20 18 24 24 H 1.48503 * 109.46860 * 214.94830 * 22 20 18 25 25 H 1.48493 * 109.47067 * 334.94682 * 22 20 18 26 26 C 1.46921 * 120.63027 * 184.76665 * 12 10 9 27 27 H 1.09003 * 109.47242 * 60.00164 * 1 2 3 28 28 H 1.08993 * 109.47048 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46979 * 300.00271 * 1 2 3 30 30 H 1.09000 * 109.46998 * 240.00286 * 2 1 3 31 31 H 1.09003 * 109.47242 * 119.99836 * 2 1 3 32 32 H 1.09003 * 109.47584 * 59.99709 * 5 3 2 33 33 H 1.09001 * 109.47197 * 179.97438 * 5 3 2 34 34 H 1.09003 * 109.47106 * 299.99480 * 5 3 2 35 35 H 1.08998 * 109.47395 * 60.00139 * 8 6 3 36 36 H 1.09003 * 109.47236 * 179.97438 * 8 6 3 37 37 H 1.08997 * 109.47659 * 300.00016 * 8 6 3 38 38 H 0.96997 * 120.00432 * 335.00079 * 9 6 3 39 39 H 1.08997 * 109.59036 * 353.37378 * 13 12 10 40 40 H 1.09005 * 109.58855 * 113.65597 * 13 12 10 41 41 H 1.09004 * 109.49227 * 65.31678 * 14 13 12 42 42 H 1.09004 * 109.49993 * 185.41462 * 14 13 12 43 43 H 1.09001 * 109.45542 * 181.38029 * 15 14 13 44 44 H 1.08992 * 109.45739 * 301.35349 * 15 14 13 45 45 H 0.96998 * 119.99604 * 180.02562 * 21 20 18 46 46 H 1.09005 * 109.58299 * 246.20407 * 26 12 10 47 47 H 1.08996 * 109.59098 * 6.62565 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5649 1.4444 0.1257 7 1 3.8570 0.8801 1.0113 8 6 4.1798 0.7976 -1.1170 9 7 4.0432 2.8239 0.2458 10 6 5.2190 3.0789 0.8534 11 8 5.8378 2.1763 1.3833 12 7 5.7088 4.3343 0.8735 13 6 4.9230 5.4531 0.3354 14 6 5.7737 6.2028 -0.6947 15 6 7.0989 6.6175 -0.0512 16 6 7.8654 5.3692 0.3917 17 1 8.0429 4.7263 -0.4703 18 6 9.1845 5.7771 0.9959 19 1 9.2564 6.6889 1.5702 20 6 10.2993 4.9860 0.8156 21 7 11.4704 5.3896 1.2576 22 14 10.1462 3.3411 -0.0564 23 1 10.4701 3.5119 -1.4956 24 1 11.0900 2.3690 0.5514 25 1 8.7571 2.8350 0.0817 26 6 7.0362 4.6110 1.4393 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 0.5489 2.1253 -1.3969 33 1 1.9982 3.1544 -1.3072 34 1 2.0699 1.5876 -2.1492 35 1 3.8876 1.3619 -2.0026 36 1 5.2662 0.7993 -1.0277 37 1 3.8238 -0.2287 -1.2064 38 1 3.5138 3.5537 -0.1119 39 1 4.0222 5.0698 -0.1439 40 1 4.6468 6.1284 1.1453 41 1 5.9708 5.5519 -1.5465 42 1 5.2388 7.0910 -1.0310 43 1 7.6958 7.1725 -0.7749 44 1 6.9001 7.2480 0.8153 45 1 12.2547 4.8333 1.1304 46 1 6.9309 5.2203 2.3370 47 1 7.5302 3.6719 1.6886 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595477115.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:53 Heat of formation + Delta-G solvation = -51.421000 kcal Electronic energy + Delta-G solvation = -23664.979710 eV Core-core repulsion = 20460.915813 eV Total energy + Delta-G solvation = -3204.063897 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.14354 -38.17957 -36.70277 -34.00302 -33.18056 -31.86534 -30.67111 -30.00740 -28.76736 -25.58220 -25.18621 -24.67625 -22.51297 -21.85667 -20.01444 -19.56288 -18.85728 -17.75795 -16.73282 -16.01565 -15.57945 -15.08818 -14.92909 -14.50613 -14.10913 -13.93755 -13.77990 -13.65068 -13.23349 -12.92649 -12.59801 -12.49718 -12.41578 -12.31926 -12.26593 -12.10770 -11.97040 -11.29888 -11.12931 -11.00505 -10.94686 -10.77869 -10.59591 -10.56435 -10.53494 -10.00900 -9.69004 -9.66034 -9.31407 -9.06855 -8.87430 -8.58473 -7.88281 -6.08608 -4.08933 3.04929 3.33970 3.44931 3.57302 3.65515 4.19569 4.46676 4.50684 4.59870 4.69364 5.03478 5.13621 5.18326 5.23288 5.25535 5.31954 5.34565 5.38744 5.47039 5.51898 5.67622 5.73577 5.74422 5.76787 5.80781 5.86093 5.96345 6.01741 6.03713 6.12313 6.19057 6.31477 6.37237 6.44608 6.65919 6.69323 6.79071 6.80262 6.99817 7.28388 7.36538 7.48353 7.78557 8.36665 8.51800 8.96357 9.05310 9.55341 11.03906 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024783 B = 0.004433 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.535311 B = 6315.037598 C = 6939.243095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.099 4.099 4 H 0.075 0.925 5 C -0.152 4.152 6 C 0.163 3.837 7 H 0.086 0.914 8 C -0.167 4.167 9 N -0.750 5.750 10 C 0.702 3.298 11 O -0.593 6.593 12 N -0.626 5.626 13 C 0.117 3.883 14 C -0.137 4.137 15 C -0.103 4.103 16 C 0.007 3.993 17 H 0.034 0.966 18 C -0.513 4.513 19 H 0.075 0.925 20 C 0.075 3.925 21 N -0.897 5.897 22 Si 0.869 3.131 23 H -0.280 1.280 24 H -0.288 1.288 25 H -0.253 1.253 26 C 0.129 3.871 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.391 0.609 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.053 0.947 45 H 0.264 0.736 46 H 0.057 0.943 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.560 -5.785 -5.786 23.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.118 4.118 4 H 0.093 0.907 5 C -0.209 4.209 6 C 0.058 3.942 7 H 0.105 0.895 8 C -0.225 4.225 9 N -0.409 5.409 10 C 0.403 3.597 11 O -0.472 6.472 12 N -0.363 5.363 13 C -0.007 4.007 14 C -0.175 4.175 15 C -0.141 4.141 16 C -0.013 4.013 17 H 0.052 0.948 18 C -0.551 4.551 19 H 0.093 0.907 20 C -0.127 4.127 21 N -0.534 5.534 22 Si 0.695 3.305 23 H -0.206 1.206 24 H -0.214 1.214 25 H -0.177 1.177 26 C 0.008 3.992 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.227 0.773 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -21.873 -6.495 -5.367 23.440 hybrid contribution -0.147 -0.445 -0.651 0.802 sum -22.020 -6.941 -6.018 23.859 Atomic orbital electron populations 1.21814 0.95775 1.01529 1.01864 1.21566 0.95841 0.95666 1.02524 1.21434 0.94448 0.97074 0.98838 0.90690 1.21969 1.01287 1.00227 0.97425 1.20746 0.92006 0.82373 0.99096 0.89547 1.22305 1.01963 1.00329 0.97951 1.45446 1.22611 1.08715 1.64085 1.15976 0.81002 0.83402 0.79281 1.90884 1.60576 1.44404 1.51297 1.47753 1.20108 1.04653 1.63771 1.21518 0.93285 0.89099 0.96797 1.22007 0.98099 0.99319 0.98084 1.21544 0.93619 0.99308 0.99591 1.19562 0.94436 0.92791 0.94541 0.94793 1.20908 0.90696 1.09352 1.34174 0.90719 1.25065 0.95147 0.97640 0.94863 1.69907 0.99097 1.37784 1.46616 0.86964 0.79341 0.84491 0.79655 1.20648 1.21380 1.17679 1.22441 0.78660 1.01098 0.97017 0.92507 0.92830 0.92805 0.91459 0.91679 0.92328 0.92970 0.91909 0.92350 0.92114 0.91853 0.77258 0.92007 0.91773 0.92201 0.91900 0.92242 0.92786 0.92599 0.92486 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.67 37.16 0.36 -0.64 16 2 C -0.12 -0.91 5.03 -26.72 -0.13 -1.05 16 3 C -0.10 -0.87 2.32 -90.62 -0.21 -1.08 16 4 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 5 C -0.15 -1.14 8.33 37.16 0.31 -0.84 16 6 C 0.16 2.00 2.39 -67.93 -0.16 1.84 16 7 H 0.09 1.25 7.51 -51.93 -0.39 0.86 16 8 C -0.17 -2.00 8.75 37.16 0.33 -1.68 16 9 N -0.75 -10.45 4.93 -58.67 -0.29 -10.74 16 10 C 0.70 13.36 8.26 -86.91 -0.72 12.64 16 11 O -0.59 -13.85 15.41 5.28 0.08 -13.77 16 12 N -0.63 -11.65 2.97 -178.24 -0.53 -12.18 16 13 C 0.12 1.65 6.43 -3.71 -0.02 1.62 16 14 C -0.14 -2.03 6.08 -26.61 -0.16 -2.19 16 15 C -0.10 -1.95 5.15 -26.69 -0.14 -2.09 16 16 C 0.01 0.15 1.79 -91.42 -0.16 -0.01 16 17 H 0.03 0.83 5.59 -51.93 -0.29 0.54 16 18 C -0.51 -14.20 8.86 -34.43 -0.31 -14.50 16 19 H 0.07 2.22 8.06 -52.49 -0.42 1.79 16 20 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 21 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 22 Si 0.87 22.47 26.64 -169.99 -4.53 17.94 16 23 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 25 H -0.25 -6.63 6.00 56.52 0.34 -6.29 16 26 C 0.13 2.87 5.53 -3.49 -0.02 2.85 16 27 H 0.06 0.35 6.57 -51.93 -0.34 0.00 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.50 6.81 -51.93 -0.35 0.15 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.38 6.57 -51.93 -0.34 0.04 16 33 H 0.05 0.39 6.77 -51.93 -0.35 0.04 16 34 H 0.06 0.48 6.35 -51.93 -0.33 0.15 16 35 H 0.06 0.63 6.34 -51.93 -0.33 0.30 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.63 6.68 -51.93 -0.35 0.28 16 38 H 0.39 4.42 4.63 -40.82 -0.19 4.23 16 39 H 0.06 0.68 5.57 -51.93 -0.29 0.39 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 46 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 47 H 0.08 2.08 5.96 -51.93 -0.31 1.77 16 LS Contribution 349.47 15.07 5.27 5.27 Total: -1.00 -32.90 349.47 -8.50 -41.40 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -8.13 Total: 1.86 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -1.14 Total: -3.02 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: -0.04 Total: -49.68 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: 0.08 Total: -13.77 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.53 Total: 17.94 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.90 -8.50 -41.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595477115.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.021 kcal (2) G-P(sol) polarization free energy of solvation -32.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds