Wall clock time and date at job start Tue Mar 31 2020 05:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.47101 * 2 1 4 4 H 1.09003 * 109.46751 * 54.99937 * 3 2 1 5 5 C 1.52999 * 109.47030 * 295.00239 * 3 2 1 6 6 C 1.52999 * 109.46970 * 174.99935 * 3 2 1 7 7 H 1.08998 * 109.46952 * 304.99956 * 6 3 2 8 8 C 1.52997 * 109.46961 * 65.00088 * 6 3 2 9 9 N 1.46503 * 109.46626 * 185.00008 * 6 3 2 10 10 C 1.34777 * 119.99554 * 155.00253 * 9 6 3 11 11 O 1.21594 * 120.00056 * 354.89152 * 10 9 6 12 12 N 1.34781 * 120.00085 * 174.88904 * 10 9 6 13 13 C 1.46920 * 120.62558 * 5.04686 * 12 10 9 14 14 C 1.53193 * 108.77619 * 233.58073 * 13 12 10 15 15 C 1.53043 * 109.31390 * 305.37119 * 14 13 12 16 16 C 1.53039 * 109.53481 * 61.36162 * 15 14 13 17 17 H 1.08995 * 109.49822 * 58.58977 * 16 15 14 18 18 C 1.50709 * 109.49127 * 178.68528 * 16 15 14 19 19 H 1.07997 * 120.00081 * 35.06413 * 18 16 15 20 20 C 1.37883 * 119.99562 * 215.05752 * 18 16 15 21 21 N 1.31514 * 119.99622 * 174.98143 * 20 18 16 22 22 Si 1.86805 * 120.00015 * 354.98520 * 20 18 16 23 23 H 1.48498 * 109.46685 * 94.95041 * 22 20 18 24 24 H 1.48503 * 109.46860 * 214.94830 * 22 20 18 25 25 H 1.48493 * 109.47067 * 334.94682 * 22 20 18 26 26 C 1.46921 * 120.63027 * 184.76665 * 12 10 9 27 27 H 1.09003 * 109.47242 * 60.00164 * 1 2 3 28 28 H 1.08993 * 109.47048 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46979 * 300.00271 * 1 2 3 30 30 H 1.09000 * 109.46998 * 240.00286 * 2 1 3 31 31 H 1.09003 * 109.47242 * 119.99836 * 2 1 3 32 32 H 1.09003 * 109.47584 * 59.99709 * 5 3 2 33 33 H 1.09001 * 109.47197 * 179.97438 * 5 3 2 34 34 H 1.09003 * 109.47106 * 299.99480 * 5 3 2 35 35 H 1.08998 * 109.47395 * 60.00139 * 8 6 3 36 36 H 1.09003 * 109.47236 * 179.97438 * 8 6 3 37 37 H 1.08997 * 109.47659 * 300.00016 * 8 6 3 38 38 H 0.96997 * 120.00432 * 335.00079 * 9 6 3 39 39 H 1.08997 * 109.59036 * 353.37378 * 13 12 10 40 40 H 1.09005 * 109.58855 * 113.65597 * 13 12 10 41 41 H 1.09004 * 109.49227 * 65.31678 * 14 13 12 42 42 H 1.09004 * 109.49993 * 185.41462 * 14 13 12 43 43 H 1.09001 * 109.45542 * 181.38029 * 15 14 13 44 44 H 1.08992 * 109.45739 * 301.35349 * 15 14 13 45 45 H 0.96998 * 119.99604 * 180.02562 * 21 20 18 46 46 H 1.09005 * 109.58299 * 246.20407 * 26 12 10 47 47 H 1.08996 * 109.59098 * 6.62565 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5649 1.4444 0.1257 7 1 3.8570 0.8801 1.0113 8 6 4.1798 0.7976 -1.1170 9 7 4.0432 2.8239 0.2458 10 6 5.2190 3.0789 0.8534 11 8 5.8378 2.1763 1.3833 12 7 5.7088 4.3343 0.8735 13 6 4.9230 5.4531 0.3354 14 6 5.7737 6.2028 -0.6947 15 6 7.0989 6.6175 -0.0512 16 6 7.8654 5.3692 0.3917 17 1 8.0429 4.7263 -0.4703 18 6 9.1845 5.7771 0.9959 19 1 9.2564 6.6889 1.5702 20 6 10.2993 4.9860 0.8156 21 7 11.4704 5.3896 1.2576 22 14 10.1462 3.3411 -0.0564 23 1 10.4701 3.5119 -1.4956 24 1 11.0900 2.3690 0.5514 25 1 8.7571 2.8350 0.0817 26 6 7.0362 4.6110 1.4393 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 0.5489 2.1253 -1.3969 33 1 1.9982 3.1544 -1.3072 34 1 2.0699 1.5876 -2.1492 35 1 3.8876 1.3619 -2.0026 36 1 5.2662 0.7993 -1.0277 37 1 3.8238 -0.2287 -1.2064 38 1 3.5138 3.5537 -0.1119 39 1 4.0222 5.0698 -0.1439 40 1 4.6468 6.1284 1.1453 41 1 5.9708 5.5519 -1.5465 42 1 5.2388 7.0910 -1.0310 43 1 7.6958 7.1725 -0.7749 44 1 6.9001 7.2480 0.8153 45 1 12.2547 4.8333 1.1304 46 1 6.9309 5.2203 2.3370 47 1 7.5302 3.6719 1.6886 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595477115.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:53 Heat of formation + Delta-G solvation = -72.502182 kcal Electronic energy + Delta-G solvation = -23665.893859 eV Core-core repulsion = 20460.915813 eV Total energy + Delta-G solvation = -3204.978046 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.52385 -39.28459 -38.09287 -35.45341 -34.76894 -33.51778 -32.16346 -31.15092 -29.50888 -27.09472 -26.48744 -25.92779 -23.47312 -23.37077 -21.50467 -20.64560 -20.18486 -19.26941 -18.67618 -17.31149 -16.63951 -16.39636 -16.28005 -15.72992 -15.50419 -15.26176 -15.20091 -14.73381 -14.62872 -14.37692 -14.18980 -13.84312 -13.68915 -13.19658 -13.10728 -13.07645 -12.88454 -12.75723 -12.65502 -12.58950 -12.05296 -11.91343 -11.74024 -11.65485 -11.61445 -11.46385 -11.32366 -11.28193 -11.11302 -10.92270 -10.78597 -10.17677 -9.37473 -8.36088 -6.37221 1.22556 1.31091 1.45776 1.70295 2.18279 2.28011 2.95523 3.04843 3.71787 3.90267 3.97527 4.05475 4.13708 4.16385 4.34941 4.38310 4.47122 4.51455 4.58643 4.65180 4.68907 4.71517 4.76019 4.77920 4.91165 4.96958 4.99002 5.02666 5.09012 5.11924 5.16584 5.21071 5.23185 5.25032 5.29174 5.45535 5.53519 5.58954 5.60226 5.63625 5.66315 5.72691 6.07516 6.29137 6.71521 7.06397 7.29213 7.61122 8.80553 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024783 B = 0.004433 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.535311 B = 6315.037598 C = 6939.243095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.087 4.087 4 H 0.076 0.924 5 C -0.151 4.151 6 C 0.159 3.841 7 H 0.057 0.943 8 C -0.162 4.162 9 N -0.727 5.727 10 C 0.695 3.305 11 O -0.645 6.645 12 N -0.630 5.630 13 C 0.111 3.889 14 C -0.127 4.127 15 C -0.101 4.101 16 C 0.007 3.993 17 H 0.021 0.979 18 C -0.509 4.509 19 H 0.045 0.955 20 C 0.024 3.976 21 N -0.942 5.942 22 Si 0.929 3.071 23 H -0.266 1.266 24 H -0.289 1.289 25 H -0.263 1.263 26 C 0.142 3.858 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.020 0.980 37 H 0.083 0.917 38 H 0.407 0.593 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.056 0.944 42 H 0.106 0.894 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.266 0.734 46 H 0.057 0.943 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.370 -5.574 -7.795 28.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.107 4.107 4 H 0.095 0.905 5 C -0.208 4.208 6 C 0.054 3.946 7 H 0.076 0.924 8 C -0.220 4.220 9 N -0.387 5.387 10 C 0.396 3.604 11 O -0.527 6.527 12 N -0.366 5.366 13 C -0.011 4.011 14 C -0.165 4.165 15 C -0.139 4.139 16 C -0.013 4.013 17 H 0.039 0.961 18 C -0.547 4.547 19 H 0.063 0.937 20 C -0.174 4.174 21 N -0.582 5.582 22 Si 0.755 3.245 23 H -0.192 1.192 24 H -0.216 1.216 25 H -0.188 1.188 26 C 0.018 3.982 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.039 0.961 37 H 0.102 0.898 38 H 0.247 0.753 39 H 0.120 0.880 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.124 0.876 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -25.754 -6.254 -7.420 27.521 hybrid contribution 0.987 -0.474 0.027 1.095 sum -24.766 -6.728 -7.394 26.708 Atomic orbital electron populations 1.21790 0.94497 1.02067 1.02311 1.21575 0.96887 0.94841 1.02337 1.21356 0.91199 0.98112 0.99985 0.90534 1.21983 1.02450 1.00192 0.96201 1.20912 0.94598 0.80981 0.98063 0.92436 1.22262 0.99260 1.02019 0.98435 1.45277 1.20810 1.10122 1.62465 1.16220 0.81984 0.82840 0.79337 1.90850 1.62345 1.46045 1.53473 1.47639 1.19101 1.05998 1.63823 1.21890 0.93776 0.87976 0.97444 1.21949 0.95892 1.01085 0.97570 1.21448 0.95579 0.96890 0.99945 1.19517 0.93167 0.94772 0.93869 0.96117 1.21241 0.92875 1.07786 1.32813 0.93687 1.25747 0.95056 1.00571 0.96073 1.70016 0.99916 1.39278 1.48960 0.86008 0.78352 0.80842 0.79304 1.19151 1.21584 1.18775 1.21862 0.80692 0.98846 0.96788 0.91543 0.92346 0.92831 0.90991 0.92664 0.90692 0.92493 0.91773 0.90557 0.96077 0.89845 0.75299 0.88020 0.89934 0.92555 0.87551 0.92881 0.92426 0.92480 0.92465 0.93857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.67 71.98 0.70 -0.82 16 2 C -0.12 -1.55 5.03 30.60 0.15 -1.40 16 3 C -0.09 -1.29 2.32 -10.79 -0.03 -1.31 16 4 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 5 C -0.15 -1.65 8.33 71.98 0.60 -1.05 16 6 C 0.16 3.69 2.39 44.99 0.11 3.80 16 7 H 0.06 1.69 7.51 -2.39 -0.02 1.67 16 8 C -0.16 -3.65 8.75 71.98 0.63 -3.02 16 9 N -0.73 -18.79 4.93 -457.80 -2.25 -21.04 16 10 C 0.69 26.05 8.26 179.05 1.48 27.53 16 11 O -0.64 -31.01 15.41 -4.01 -0.06 -31.07 16 12 N -0.63 -22.61 2.97 -836.07 -2.48 -25.09 16 13 C 0.11 2.68 6.43 86.36 0.56 3.24 16 14 C -0.13 -3.25 6.08 30.67 0.19 -3.06 16 15 C -0.10 -3.66 5.15 30.62 0.16 -3.50 16 16 C 0.01 0.31 1.79 -11.31 -0.02 0.29 16 17 H 0.02 1.02 5.59 -2.39 -0.01 1.00 16 18 C -0.51 -29.01 8.86 25.60 0.23 -28.78 16 19 H 0.04 2.78 8.06 -2.91 -0.02 2.75 16 20 C 0.02 1.42 5.47 84.66 0.46 1.88 16 21 N -0.94 -59.76 13.96 21.45 0.30 -59.46 16 22 Si 0.93 48.21 26.64 68.60 1.83 50.04 16 23 H -0.27 -13.08 7.11 99.48 0.71 -12.38 16 24 H -0.29 -14.98 7.11 99.48 0.71 -14.28 16 25 H -0.26 -14.02 6.00 99.48 0.60 -13.42 16 26 C 0.14 6.38 5.53 86.51 0.48 6.85 16 27 H 0.07 0.56 6.57 -2.39 -0.02 0.54 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.88 6.81 -2.39 -0.02 0.86 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 0.62 6.57 -2.39 -0.02 0.60 16 33 H 0.06 0.57 6.77 -2.39 -0.02 0.56 16 34 H 0.06 0.71 6.35 -2.39 -0.02 0.69 16 35 H 0.08 1.44 6.34 -2.39 -0.02 1.42 16 36 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.08 1.52 6.68 -2.39 -0.02 1.51 16 38 H 0.41 7.60 4.63 -92.71 -0.43 7.18 16 39 H 0.10 1.67 5.57 -2.39 -0.01 1.65 16 40 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 41 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 42 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 46 H 0.06 2.52 8.14 -2.38 -0.02 2.51 16 47 H 0.04 2.28 5.96 -2.39 -0.01 2.26 16 Total: -1.00 -76.41 349.47 3.43 -72.98 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.41 Total: 13.00 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 5.69 Total: 0.65 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -4.44 Total: -105.60 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.06 Total: -31.07 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 1.83 Total: 50.04 kcal Total: -76.41 3.43 -72.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595477115.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.481 kcal (2) G-P(sol) polarization free energy of solvation -76.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds