Wall clock time and date at job start Tue Mar 31 2020 05:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47118 * 2 1 4 4 H 1.08997 * 109.47514 * 55.00762 * 3 2 1 5 5 C 1.52999 * 109.47142 * 295.00175 * 3 2 1 6 6 C 1.52999 * 109.46769 * 175.00424 * 3 2 1 7 7 H 1.09006 * 109.47391 * 304.99537 * 6 3 2 8 8 C 1.52999 * 109.47488 * 65.00105 * 6 3 2 9 9 N 1.46506 * 109.47214 * 184.99882 * 6 3 2 10 10 C 1.34770 * 120.00206 * 154.99482 * 9 6 3 11 11 O 1.21581 * 120.00221 * 5.07564 * 10 9 6 12 12 N 1.34778 * 120.00085 * 185.06735 * 10 9 6 13 13 C 1.46930 * 120.63159 * 354.94588 * 12 10 9 14 14 C 1.53189 * 108.77572 * 126.40640 * 13 12 10 15 15 C 1.53044 * 109.31020 * 54.64279 * 14 13 12 16 16 C 1.53042 * 109.53322 * 298.63088 * 15 14 13 17 17 H 1.09003 * 109.49649 * 301.40952 * 16 15 14 18 18 C 1.50702 * 109.52201 * 181.33399 * 16 15 14 19 19 H 1.08005 * 120.00444 * 0.08325 * 18 16 15 20 20 C 1.37875 * 120.00082 * 180.02562 * 18 16 15 21 21 N 1.31514 * 120.00514 * 179.97438 * 20 18 16 22 22 Si 1.86804 * 120.00105 * 0.02562 * 20 18 16 23 23 H 1.48497 * 109.47533 * 89.99277 * 22 20 18 24 24 H 1.48504 * 109.47098 * 209.99775 * 22 20 18 25 25 H 1.48505 * 109.46882 * 329.99519 * 22 20 18 26 26 C 1.46926 * 120.63021 * 174.96440 * 12 10 9 27 27 H 1.08998 * 109.46991 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46936 * 299.99829 * 1 2 3 29 29 H 1.08991 * 109.47524 * 59.99570 * 1 2 3 30 30 H 1.09001 * 109.46696 * 239.99777 * 2 1 3 31 31 H 1.09005 * 109.47368 * 120.00461 * 2 1 3 32 32 H 1.09004 * 109.47172 * 299.99988 * 5 3 2 33 33 H 1.08998 * 109.47372 * 60.00039 * 5 3 2 34 34 H 1.08998 * 109.47043 * 180.02562 * 5 3 2 35 35 H 1.08998 * 109.46985 * 59.99935 * 8 6 3 36 36 H 1.09004 * 109.47244 * 179.97438 * 8 6 3 37 37 H 1.09000 * 109.46693 * 299.99624 * 8 6 3 38 38 H 0.97005 * 119.99639 * 335.00466 * 9 6 3 39 39 H 1.08995 * 109.59077 * 246.19974 * 13 12 10 40 40 H 1.09005 * 109.58285 * 6.62268 * 13 12 10 41 41 H 1.09001 * 109.49737 * 174.58841 * 14 13 12 42 42 H 1.08996 * 109.50404 * 294.68585 * 14 13 12 43 43 H 1.09004 * 109.46376 * 178.61265 * 15 14 13 44 44 H 1.08993 * 109.46195 * 58.64963 * 15 14 13 45 45 H 0.96992 * 120.00700 * 180.02562 * 21 20 18 46 46 H 1.09003 * 109.58612 * 113.80833 * 26 12 10 47 47 H 1.08993 * 109.70767 * 353.44499 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6352 2.1265 -1.3073 6 6 3.5648 1.4442 0.1256 7 1 3.8571 0.8799 1.0112 8 6 4.1797 0.7975 -1.1172 9 7 4.0434 2.8237 0.2457 10 6 5.2190 3.0787 0.8532 11 8 5.9260 2.1598 1.2193 12 7 5.6112 4.3523 1.0548 13 6 4.8231 5.4716 0.5211 14 6 4.5028 6.4388 1.6651 15 6 5.8043 6.8580 2.3527 16 6 6.4923 5.6243 2.9416 17 1 5.8230 5.1388 3.6518 18 6 7.7570 6.0415 3.6468 19 1 8.0418 7.0830 3.6741 20 6 8.5501 5.0939 4.2583 21 7 9.6541 5.4579 4.8734 22 14 8.0573 3.2926 4.2120 23 1 8.6455 2.6492 3.0099 24 1 8.5573 2.6111 5.4330 25 1 6.5771 3.1857 4.1565 26 6 6.8350 4.6477 1.8122 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8898 30 1 1.8932 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.0698 1.5875 -2.1492 33 1 0.5489 2.1253 -1.3969 34 1 1.9989 3.1540 -1.3075 35 1 3.8875 1.3619 -2.0027 36 1 5.2661 0.7992 -1.0278 37 1 3.8237 -0.2288 -1.2064 38 1 3.5139 3.5536 -0.1120 39 1 5.3981 5.9904 -0.2459 40 1 3.8953 5.0933 0.0919 41 1 4.0017 7.3208 1.2663 42 1 3.8523 5.9456 2.3872 43 1 5.5814 7.5655 3.1515 44 1 6.4644 7.3290 1.6245 45 1 10.2122 4.7912 5.3033 46 1 7.5741 5.0994 1.1505 47 1 7.2371 3.7270 2.2347 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595477121.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:56 Heat of formation + Delta-G solvation = -43.971211 kcal Electronic energy + Delta-G solvation = -23796.262018 eV Core-core repulsion = 20592.521168 eV Total energy + Delta-G solvation = -3203.740850 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.18928 -38.22290 -36.75191 -34.03891 -33.20874 -31.93305 -30.70741 -30.02598 -28.77441 -25.58320 -25.19244 -24.70202 -22.52779 -22.01207 -20.03878 -19.57781 -18.90275 -17.76460 -16.70810 -16.01056 -15.60707 -15.17086 -14.91036 -14.57154 -14.13095 -13.96200 -13.88243 -13.69884 -13.25362 -12.92774 -12.80893 -12.48989 -12.42536 -12.30628 -12.19177 -12.12985 -11.96516 -11.33237 -11.12678 -11.01823 -10.94407 -10.78057 -10.59753 -10.59034 -10.34964 -10.06693 -9.75203 -9.65400 -9.20217 -9.06656 -8.89893 -8.55176 -7.91815 -6.07185 -4.08698 3.01612 3.42955 3.50907 3.60765 3.64235 4.16944 4.46705 4.50721 4.60162 4.69296 5.03377 5.11998 5.18580 5.25256 5.25768 5.31247 5.34200 5.34620 5.45484 5.47035 5.67509 5.73016 5.73727 5.76631 5.80252 5.83162 5.95256 6.00945 6.02929 6.11061 6.13424 6.21988 6.35998 6.42447 6.58575 6.63973 6.76577 6.77093 6.92772 7.15247 7.39180 7.48659 7.76911 8.34059 8.51395 8.95566 9.01889 9.54739 11.04755 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022559 B = 0.004733 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.908653 B = 5914.486741 C = 6585.681368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.100 4.100 4 H 0.076 0.924 5 C -0.151 4.151 6 C 0.164 3.836 7 H 0.084 0.916 8 C -0.166 4.166 9 N -0.748 5.748 10 C 0.702 3.298 11 O -0.592 6.592 12 N -0.626 5.626 13 C 0.117 3.883 14 C -0.136 4.136 15 C -0.099 4.099 16 C 0.004 3.996 17 H 0.029 0.971 18 C -0.516 4.516 19 H 0.077 0.923 20 C 0.073 3.927 21 N -0.897 5.897 22 Si 0.881 3.119 23 H -0.272 1.272 24 H -0.297 1.297 25 H -0.265 1.265 26 C 0.120 3.880 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.391 0.609 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.265 0.735 46 H 0.063 0.937 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.745 -5.971 -13.568 23.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.119 4.119 4 H 0.094 0.906 5 C -0.208 4.208 6 C 0.059 3.941 7 H 0.102 0.898 8 C -0.224 4.224 9 N -0.407 5.407 10 C 0.403 3.597 11 O -0.471 6.471 12 N -0.362 5.362 13 C -0.007 4.007 14 C -0.175 4.175 15 C -0.137 4.137 16 C -0.016 4.016 17 H 0.048 0.952 18 C -0.554 4.554 19 H 0.095 0.905 20 C -0.129 4.129 21 N -0.535 5.535 22 Si 0.711 3.289 23 H -0.198 1.198 24 H -0.224 1.224 25 H -0.190 1.190 26 C -0.001 4.001 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.228 0.772 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.046 -6.700 -13.173 23.325 hybrid contribution -0.367 -0.598 -0.156 0.719 sum -18.413 -7.298 -13.328 23.873 Atomic orbital electron populations 1.21813 0.95740 1.01541 1.01895 1.21560 0.95883 0.95623 1.02507 1.21443 0.94410 0.97138 0.98917 0.90609 1.21961 1.01330 1.00173 0.97360 1.20754 0.92039 0.82231 0.99118 0.89777 1.22288 1.02072 1.00252 0.97779 1.45435 1.22388 1.08768 1.64145 1.15968 0.81468 0.83519 0.78735 1.90891 1.54794 1.43550 1.57824 1.47663 1.27940 1.03174 1.57439 1.21540 0.94422 0.88407 0.96344 1.21991 0.99545 0.98197 0.97724 1.21422 0.94203 0.98923 0.99147 1.19507 0.97197 0.92116 0.92771 0.95247 1.20959 1.05118 0.96006 1.33331 0.90488 1.25038 0.94603 0.98897 0.94410 1.69888 1.13526 1.34400 1.35645 0.86961 0.79971 0.85112 0.76837 1.19836 1.22436 1.18950 1.22457 0.83481 1.00549 0.93605 0.92820 0.92766 0.92505 0.91471 0.91680 0.91945 0.92290 0.92993 0.92440 0.91929 0.91933 0.77217 0.91631 0.91846 0.91770 0.92069 0.92276 0.92517 0.92535 0.91908 0.90339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.67 37.16 0.36 -0.68 16 2 C -0.12 -0.94 5.03 -26.73 -0.13 -1.07 16 3 C -0.10 -0.90 2.32 -90.62 -0.21 -1.11 16 4 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 5 C -0.15 -1.13 8.33 37.16 0.31 -0.82 16 6 C 0.16 2.03 2.31 -67.93 -0.16 1.88 16 7 H 0.08 1.26 7.65 -51.93 -0.40 0.86 16 8 C -0.17 -1.90 8.75 37.16 0.33 -1.58 16 9 N -0.75 -10.58 4.93 -58.67 -0.29 -10.87 16 10 C 0.70 13.66 8.26 -86.92 -0.72 12.94 16 11 O -0.59 -14.15 15.45 5.29 0.08 -14.07 16 12 N -0.63 -11.96 2.97 -178.50 -0.53 -12.50 16 13 C 0.12 1.66 6.43 -3.71 -0.02 1.63 16 14 C -0.14 -2.00 6.08 -26.61 -0.16 -2.16 16 15 C -0.10 -1.88 5.11 -26.69 -0.14 -2.01 16 16 C 0.00 0.09 1.84 -91.65 -0.17 -0.08 16 17 H 0.03 0.74 7.20 -51.93 -0.37 0.37 16 18 C -0.52 -14.50 9.15 -34.44 -0.31 -14.81 16 19 H 0.08 2.30 7.99 -52.48 -0.42 1.88 16 20 C 0.07 2.16 5.45 -17.82 -0.10 2.06 16 21 N -0.90 -27.83 13.96 55.43 0.77 -27.05 16 22 Si 0.88 23.86 24.32 -169.99 -4.13 19.72 16 23 H -0.27 -7.49 6.92 56.52 0.39 -7.10 16 24 H -0.30 -7.96 7.11 56.52 0.40 -7.55 16 25 H -0.26 -7.20 6.53 56.52 0.37 -6.83 16 26 C 0.12 2.78 5.10 -3.71 -0.02 2.76 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.35 6.56 -51.93 -0.34 0.01 16 30 H 0.07 0.50 6.81 -51.93 -0.35 0.15 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.46 6.35 -51.93 -0.33 0.13 16 33 H 0.06 0.38 6.57 -51.93 -0.34 0.04 16 34 H 0.05 0.38 6.77 -51.93 -0.35 0.03 16 35 H 0.06 0.58 6.34 -51.93 -0.33 0.25 16 36 H 0.06 0.90 8.09 -51.93 -0.42 0.48 16 37 H 0.06 0.60 6.68 -51.93 -0.35 0.26 16 38 H 0.39 4.45 4.63 -40.82 -0.19 4.26 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.69 5.57 -51.93 -0.29 0.41 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 46 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 47 H 0.08 2.05 2.36 -51.93 -0.12 1.93 16 LS Contribution 345.31 15.07 5.20 5.20 Total: -1.00 -33.66 345.31 -8.05 -41.71 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -8.01 Total: 0.91 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -1.15 Total: -3.06 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: -0.05 Total: -50.42 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.08 Total: -14.07 kcal Atomic # 14 Polarization: 23.86 SS G_CDS: -4.13 Total: 19.72 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.66 -8.05 -41.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595477121.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.258 kcal (2) G-P(sol) polarization free energy of solvation -33.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds