Wall clock time and date at job start Tue Mar 31 2020 05:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47118 * 2 1 4 4 H 1.08997 * 109.47514 * 55.00762 * 3 2 1 5 5 C 1.52999 * 109.47142 * 295.00175 * 3 2 1 6 6 C 1.52999 * 109.46769 * 175.00424 * 3 2 1 7 7 H 1.09006 * 109.47391 * 304.99537 * 6 3 2 8 8 C 1.52999 * 109.47488 * 65.00105 * 6 3 2 9 9 N 1.46506 * 109.47214 * 184.99882 * 6 3 2 10 10 C 1.34770 * 120.00206 * 154.99482 * 9 6 3 11 11 O 1.21581 * 120.00221 * 5.07564 * 10 9 6 12 12 N 1.34778 * 120.00085 * 185.06735 * 10 9 6 13 13 C 1.46930 * 120.63159 * 354.94588 * 12 10 9 14 14 C 1.53189 * 108.77572 * 126.40640 * 13 12 10 15 15 C 1.53044 * 109.31020 * 54.64279 * 14 13 12 16 16 C 1.53042 * 109.53322 * 298.63088 * 15 14 13 17 17 H 1.09003 * 109.49649 * 301.40952 * 16 15 14 18 18 C 1.50702 * 109.52201 * 181.33399 * 16 15 14 19 19 H 1.08005 * 120.00444 * 0.08325 * 18 16 15 20 20 C 1.37875 * 120.00082 * 180.02562 * 18 16 15 21 21 N 1.31514 * 120.00514 * 179.97438 * 20 18 16 22 22 Si 1.86804 * 120.00105 * 0.02562 * 20 18 16 23 23 H 1.48497 * 109.47533 * 89.99277 * 22 20 18 24 24 H 1.48504 * 109.47098 * 209.99775 * 22 20 18 25 25 H 1.48505 * 109.46882 * 329.99519 * 22 20 18 26 26 C 1.46926 * 120.63021 * 174.96440 * 12 10 9 27 27 H 1.08998 * 109.46991 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46936 * 299.99829 * 1 2 3 29 29 H 1.08991 * 109.47524 * 59.99570 * 1 2 3 30 30 H 1.09001 * 109.46696 * 239.99777 * 2 1 3 31 31 H 1.09005 * 109.47368 * 120.00461 * 2 1 3 32 32 H 1.09004 * 109.47172 * 299.99988 * 5 3 2 33 33 H 1.08998 * 109.47372 * 60.00039 * 5 3 2 34 34 H 1.08998 * 109.47043 * 180.02562 * 5 3 2 35 35 H 1.08998 * 109.46985 * 59.99935 * 8 6 3 36 36 H 1.09004 * 109.47244 * 179.97438 * 8 6 3 37 37 H 1.09000 * 109.46693 * 299.99624 * 8 6 3 38 38 H 0.97005 * 119.99639 * 335.00466 * 9 6 3 39 39 H 1.08995 * 109.59077 * 246.19974 * 13 12 10 40 40 H 1.09005 * 109.58285 * 6.62268 * 13 12 10 41 41 H 1.09001 * 109.49737 * 174.58841 * 14 13 12 42 42 H 1.08996 * 109.50404 * 294.68585 * 14 13 12 43 43 H 1.09004 * 109.46376 * 178.61265 * 15 14 13 44 44 H 1.08993 * 109.46195 * 58.64963 * 15 14 13 45 45 H 0.96992 * 120.00700 * 180.02562 * 21 20 18 46 46 H 1.09003 * 109.58612 * 113.80833 * 26 12 10 47 47 H 1.08993 * 109.70767 * 353.44499 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6352 2.1265 -1.3073 6 6 3.5648 1.4442 0.1256 7 1 3.8571 0.8799 1.0112 8 6 4.1797 0.7975 -1.1172 9 7 4.0434 2.8237 0.2457 10 6 5.2190 3.0787 0.8532 11 8 5.9260 2.1598 1.2193 12 7 5.6112 4.3523 1.0548 13 6 4.8231 5.4716 0.5211 14 6 4.5028 6.4388 1.6651 15 6 5.8043 6.8580 2.3527 16 6 6.4923 5.6243 2.9416 17 1 5.8230 5.1388 3.6518 18 6 7.7570 6.0415 3.6468 19 1 8.0418 7.0830 3.6741 20 6 8.5501 5.0939 4.2583 21 7 9.6541 5.4579 4.8734 22 14 8.0573 3.2926 4.2120 23 1 8.6455 2.6492 3.0099 24 1 8.5573 2.6111 5.4330 25 1 6.5771 3.1857 4.1565 26 6 6.8350 4.6477 1.8122 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8898 30 1 1.8932 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.0698 1.5875 -2.1492 33 1 0.5489 2.1253 -1.3969 34 1 1.9989 3.1540 -1.3075 35 1 3.8875 1.3619 -2.0027 36 1 5.2661 0.7992 -1.0278 37 1 3.8237 -0.2288 -1.2064 38 1 3.5139 3.5536 -0.1120 39 1 5.3981 5.9904 -0.2459 40 1 3.8953 5.0933 0.0919 41 1 4.0017 7.3208 1.2663 42 1 3.8523 5.9456 2.3872 43 1 5.5814 7.5655 3.1515 44 1 6.4644 7.3290 1.6245 45 1 10.2122 4.7912 5.3033 46 1 7.5741 5.0994 1.1505 47 1 7.2371 3.7270 2.2347 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595477121.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:56 Heat of formation + Delta-G solvation = -66.374400 kcal Electronic energy + Delta-G solvation = -23797.233493 eV Core-core repulsion = 20592.521168 eV Total energy + Delta-G solvation = -3204.712325 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.59310 -39.35276 -38.14589 -35.53341 -34.79539 -33.58254 -32.25317 -31.16985 -29.50893 -27.05291 -26.54815 -25.98554 -23.57477 -23.48309 -21.56432 -20.67087 -20.20421 -19.15785 -18.82419 -17.39302 -16.76474 -16.53870 -16.16223 -15.77462 -15.57499 -15.38981 -15.19222 -14.91333 -14.65574 -14.49611 -14.21621 -13.82253 -13.67675 -13.26927 -13.09655 -13.06952 -12.90344 -12.88693 -12.67419 -12.33937 -12.14574 -11.95435 -11.79465 -11.66316 -11.59517 -11.48901 -11.36710 -11.32269 -11.05817 -10.96699 -10.80617 -10.21583 -9.42010 -8.40512 -6.41644 1.21329 1.28004 1.40422 1.64857 2.12858 2.19679 2.91494 2.99496 3.70522 3.88923 3.95070 4.02948 4.05356 4.13751 4.33632 4.37778 4.43554 4.49942 4.53215 4.60970 4.67404 4.69259 4.71216 4.75332 4.86500 4.91031 4.97671 4.99364 5.08531 5.13508 5.16119 5.19598 5.22071 5.22591 5.28821 5.40893 5.51751 5.53191 5.59559 5.60564 5.62863 5.69986 6.01627 6.26084 6.67233 7.02050 7.24099 7.56082 8.75628 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022559 B = 0.004733 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.908653 B = 5914.486741 C = 6585.681368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.090 4.090 4 H 0.072 0.928 5 C -0.150 4.150 6 C 0.159 3.841 7 H 0.051 0.949 8 C -0.158 4.158 9 N -0.725 5.725 10 C 0.694 3.306 11 O -0.645 6.645 12 N -0.629 5.629 13 C 0.110 3.890 14 C -0.126 4.126 15 C -0.097 4.097 16 C 0.004 3.996 17 H 0.012 0.988 18 C -0.510 4.510 19 H 0.053 0.947 20 C 0.031 3.969 21 N -0.937 5.937 22 Si 0.938 3.062 23 H -0.285 1.285 24 H -0.293 1.293 25 H -0.271 1.271 26 C 0.128 3.872 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.026 0.974 37 H 0.081 0.919 38 H 0.408 0.592 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.109 0.891 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.267 0.733 46 H 0.060 0.940 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.221 -5.579 -16.039 27.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.109 4.109 4 H 0.091 0.909 5 C -0.207 4.207 6 C 0.054 3.946 7 H 0.069 0.931 8 C -0.217 4.217 9 N -0.385 5.385 10 C 0.395 3.605 11 O -0.527 6.527 12 N -0.365 5.365 13 C -0.012 4.012 14 C -0.164 4.164 15 C -0.135 4.135 16 C -0.016 4.016 17 H 0.030 0.970 18 C -0.549 4.549 19 H 0.071 0.929 20 C -0.168 4.168 21 N -0.577 5.577 22 Si 0.769 3.231 23 H -0.212 1.212 24 H -0.220 1.220 25 H -0.197 1.197 26 C 0.004 3.996 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.045 0.955 37 H 0.100 0.900 38 H 0.248 0.752 39 H 0.102 0.898 40 H 0.122 0.878 41 H 0.127 0.873 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -21.594 -6.281 -15.679 27.415 hybrid contribution 0.686 -0.682 0.586 1.131 sum -20.908 -6.964 -15.093 26.710 Atomic orbital electron populations 1.21790 0.94493 1.02088 1.02301 1.21571 0.96902 0.94807 1.02330 1.21370 0.91251 0.98156 1.00087 0.90924 1.21972 1.02461 1.00197 0.96035 1.20931 0.94581 0.80837 0.98221 0.93106 1.22225 0.99600 1.01807 0.98028 1.45264 1.20453 1.10209 1.62549 1.16230 0.82408 0.82961 0.78887 1.90854 1.56652 1.45218 1.59972 1.47577 1.27282 1.04598 1.57092 1.21940 0.95742 0.86980 0.96518 1.21940 0.97012 1.00003 0.97470 1.21366 0.96291 0.96404 0.99435 1.19440 0.95040 0.94488 0.92611 0.96986 1.21337 1.06317 0.94731 1.32473 0.92869 1.25580 0.94832 1.01558 0.94820 1.69973 1.14812 1.35404 1.37509 0.86062 0.78945 0.82054 0.76050 1.21227 1.22042 1.19674 1.21943 0.85329 0.98526 0.93766 0.92299 0.93055 0.91357 0.90696 0.92946 0.91476 0.90732 0.92431 0.90334 0.95507 0.90046 0.75200 0.89778 0.87801 0.87252 0.92453 0.92502 0.92140 0.92342 0.92188 0.93686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.67 71.98 0.70 -0.92 16 2 C -0.12 -1.62 5.03 30.59 0.15 -1.47 16 3 C -0.09 -1.38 2.32 -10.79 -0.03 -1.41 16 4 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 5 C -0.15 -1.60 8.33 71.98 0.60 -1.00 16 6 C 0.16 3.75 2.31 44.99 0.10 3.85 16 7 H 0.05 1.55 7.65 -2.38 -0.02 1.54 16 8 C -0.16 -3.41 8.75 71.98 0.63 -2.78 16 9 N -0.73 -19.02 4.93 -457.81 -2.25 -21.27 16 10 C 0.69 26.55 8.26 179.06 1.48 28.03 16 11 O -0.64 -31.59 15.45 -3.97 -0.06 -31.65 16 12 N -0.63 -23.17 2.97 -836.92 -2.49 -25.66 16 13 C 0.11 2.67 6.43 86.36 0.56 3.22 16 14 C -0.13 -3.19 6.08 30.67 0.19 -3.00 16 15 C -0.10 -3.49 5.11 30.62 0.16 -3.34 16 16 C 0.00 0.19 1.84 -11.46 -0.02 0.17 16 17 H 0.01 0.61 7.20 -2.39 -0.02 0.60 16 18 C -0.51 -29.33 9.15 25.60 0.23 -29.09 16 19 H 0.05 3.26 7.99 -2.91 -0.02 3.23 16 20 C 0.03 1.87 5.45 84.65 0.46 2.33 16 21 N -0.94 -59.78 13.96 21.45 0.30 -59.48 16 22 Si 0.94 51.76 24.32 68.60 1.67 53.43 16 23 H -0.29 -16.17 6.92 99.48 0.69 -15.48 16 24 H -0.29 -15.72 7.11 99.48 0.71 -15.01 16 25 H -0.27 -15.05 6.53 99.48 0.65 -14.40 16 26 C 0.13 5.92 5.10 86.36 0.44 6.36 16 27 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 29 H 0.07 0.59 6.56 -2.39 -0.02 0.58 16 30 H 0.07 0.91 6.81 -2.39 -0.02 0.90 16 31 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.07 0.68 6.35 -2.39 -0.02 0.67 16 33 H 0.07 0.62 6.57 -2.39 -0.02 0.60 16 34 H 0.06 0.56 6.77 -2.39 -0.02 0.54 16 35 H 0.08 1.35 6.34 -2.39 -0.02 1.33 16 36 H 0.03 0.76 8.09 -2.38 -0.02 0.74 16 37 H 0.08 1.42 6.68 -2.39 -0.02 1.41 16 38 H 0.41 7.67 4.63 -92.70 -0.43 7.24 16 39 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.10 1.69 5.57 -2.38 -0.01 1.68 16 41 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 44 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 46 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 47 H 0.05 2.41 2.36 -2.39 -0.01 2.41 16 Total: -1.00 -77.81 345.31 3.26 -74.55 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 0.44 Total: 9.12 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: 5.65 Total: 0.96 kcal Atomic # 7 Polarization: -101.97 SS G_CDS: -4.44 Total: -106.41 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -0.06 Total: -31.65 kcal Atomic # 14 Polarization: 51.76 SS G_CDS: 1.67 Total: 53.43 kcal Total: -77.81 3.26 -74.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595477121.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.180 kcal (2) G-P(sol) polarization free energy of solvation -77.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds