Wall clock time and date at job start Tue Mar 31 2020 05:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46756 * 2 1 4 4 H 1.09000 * 109.49421 * 305.06379 * 3 2 1 5 5 C 1.53044 * 109.49531 * 185.00078 * 3 2 1 6 6 C 1.53045 * 109.53577 * 178.65153 * 5 3 2 7 7 C 1.53189 * 109.31226 * 61.36205 * 6 5 3 8 8 H 1.09004 * 109.58504 * 65.29705 * 7 6 5 9 9 C 1.53001 * 109.58532 * 185.57785 * 7 6 5 10 10 N 1.46924 * 108.77848 * 305.36840 * 7 6 5 11 11 C 1.34783 * 120.62657 * 233.61121 * 10 7 6 12 12 O 1.21587 * 120.00074 * 5.05790 * 11 10 7 13 13 N 1.34774 * 119.99584 * 185.06141 * 11 10 7 14 14 C 1.46500 * 119.99822 * 185.12627 * 13 11 10 15 15 C 1.52997 * 109.47128 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.47279 * 180.02562 * 15 14 13 17 17 C 1.50694 * 109.47025 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00620 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99702 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00322 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99883 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47330 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47134 * 119.99591 * 21 19 17 24 24 H 1.48498 * 109.47121 * 239.99587 * 21 19 17 25 25 C 1.46918 * 118.74020 * 53.60709 * 10 7 6 26 26 H 1.09000 * 109.46928 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46922 * 299.99881 * 1 2 3 28 28 H 1.09001 * 109.46931 * 60.00327 * 1 2 3 29 29 H 1.09004 * 109.47331 * 240.00334 * 2 1 3 30 30 H 1.09000 * 109.47453 * 119.99666 * 2 1 3 31 31 H 1.08997 * 109.45927 * 58.63089 * 5 3 2 32 32 H 1.08998 * 109.45808 * 298.67238 * 5 3 2 33 33 H 1.09008 * 109.49698 * 301.41283 * 6 5 3 34 34 H 1.08994 * 109.49263 * 181.31709 * 6 5 3 35 35 H 1.09001 * 109.47253 * 62.83028 * 9 7 6 36 36 H 1.09006 * 109.47179 * 302.82484 * 9 7 6 37 37 H 1.09005 * 109.46953 * 182.83250 * 9 7 6 38 38 H 0.97005 * 120.00406 * 5.12934 * 13 11 10 39 39 H 1.09011 * 109.47121 * 300.00150 * 14 13 11 40 40 H 1.08999 * 109.47547 * 60.00034 * 14 13 11 41 41 H 1.09002 * 109.46872 * 299.99509 * 15 14 13 42 42 H 1.09003 * 109.47751 * 59.99961 * 15 14 13 43 43 H 1.09002 * 109.46600 * 299.99470 * 16 15 14 44 44 H 1.08999 * 109.47214 * 59.99648 * 16 15 14 45 45 H 0.96995 * 120.00527 * 180.02562 * 20 19 17 46 46 H 1.09000 * 109.58794 * 186.60785 * 25 10 7 47 47 H 1.08998 * 109.70664 * 66.24765 * 25 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6046 1.9823 -0.8410 5 6 3.5652 1.4452 -0.1258 6 6 4.0735 2.8883 -0.1597 7 6 3.6950 3.5897 1.1486 8 1 4.2227 3.1220 1.9798 9 6 4.0763 5.0691 1.0664 10 7 2.2449 3.4652 1.3496 11 6 1.4854 4.5574 1.5659 12 8 1.9825 5.6653 1.5050 13 7 0.1749 4.4214 1.8498 14 6 -0.6747 5.6084 1.9741 15 6 -2.1069 5.1788 2.2982 16 6 -2.9944 6.4185 2.4273 17 6 -4.4051 5.9953 2.7459 18 1 -4.6450 4.9471 2.8459 19 6 -5.3900 6.9464 2.9088 20 7 -5.0981 8.2229 2.7866 21 14 -7.1390 6.4218 3.3031 22 1 -7.2046 4.9407 3.3866 23 1 -7.5511 7.0100 4.6028 24 1 -8.0517 6.8978 2.2328 25 6 1.6385 2.1276 1.3101 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8546 0.9365 -1.0453 32 1 4.0008 0.9267 0.7283 33 1 3.6190 3.4145 -0.9992 34 1 5.1576 2.8896 -0.2728 35 1 3.5063 5.5475 0.2699 36 1 5.1419 5.1585 0.8548 37 1 3.8524 5.5553 2.0159 38 1 -0.2058 3.5376 1.9719 39 1 -0.2963 6.2439 2.7749 40 1 -0.6648 6.1623 1.0353 41 1 -2.4855 4.5433 1.4977 42 1 -2.1166 4.6252 3.2371 43 1 -2.6159 7.0544 3.2276 44 1 -2.9847 6.9717 1.4882 45 1 -5.7909 8.8920 2.9016 46 1 0.5532 2.2168 1.3581 47 1 1.9943 1.5377 2.1548 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595490180.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:57 Heat of formation + Delta-G solvation = -47.847716 kcal Electronic energy + Delta-G solvation = -22943.785703 eV Core-core repulsion = 19739.876756 eV Total energy + Delta-G solvation = -3203.908948 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.69407 -38.11191 -35.82419 -34.57623 -33.67294 -32.64924 -31.07733 -30.47092 -27.27165 -26.44347 -25.24825 -23.47180 -22.67649 -21.40072 -20.77532 -20.41890 -19.39286 -17.59958 -16.57659 -16.15158 -15.68071 -15.11999 -14.73973 -14.60389 -14.39686 -14.31664 -14.13371 -13.88600 -13.62737 -13.14422 -12.88174 -12.37893 -12.31675 -12.29424 -12.08546 -11.76759 -11.72295 -11.43150 -11.30573 -11.15465 -10.95180 -10.89715 -10.82785 -10.67805 -10.57343 -10.51562 -9.83914 -9.52975 -9.12505 -9.01206 -8.76679 -8.39830 -8.36286 -6.00746 -4.03682 2.73731 3.30479 3.37953 3.38900 3.41433 4.01499 4.37157 4.45467 4.48259 4.52900 4.72153 4.94074 5.01749 5.05631 5.09383 5.23943 5.32111 5.35078 5.42867 5.45142 5.60107 5.63305 5.68199 5.74253 5.75239 5.78931 5.82259 5.84753 5.89588 5.99737 6.11177 6.21761 6.27019 6.38950 6.55176 6.65257 6.77515 6.88461 7.06246 7.09681 7.65648 7.78567 7.98448 8.14814 8.39568 8.82825 9.03294 9.60418 11.10600 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020726 B = 0.003347 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.631553 B = 8363.161206 C = 9546.922374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.116 4.116 3 C -0.103 4.103 4 H 0.076 0.924 5 C -0.113 4.113 6 C -0.132 4.132 7 C 0.161 3.839 8 H 0.065 0.935 9 C -0.135 4.135 10 N -0.631 5.631 11 C 0.703 3.297 12 O -0.583 6.583 13 N -0.744 5.744 14 C 0.135 3.865 15 C -0.120 4.120 16 C 0.024 3.976 17 C -0.521 4.521 18 H 0.056 0.944 19 C 0.056 3.944 20 N -0.893 5.893 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.116 3.884 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.037 0.963 37 H 0.074 0.926 38 H 0.390 0.610 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.260 0.740 46 H 0.080 0.920 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.191 -17.149 -5.589 25.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.154 4.154 3 C -0.123 4.123 4 H 0.094 0.906 5 C -0.151 4.151 6 C -0.171 4.171 7 C 0.058 3.942 8 H 0.083 0.917 9 C -0.192 4.192 10 N -0.369 5.369 11 C 0.405 3.595 12 O -0.462 6.462 13 N -0.401 5.401 14 C 0.011 3.989 15 C -0.158 4.158 16 C -0.014 4.014 17 C -0.559 4.559 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.008 4.008 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.055 0.945 37 H 0.093 0.907 38 H 0.226 0.774 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.038 0.962 44 H 0.037 0.963 45 H 0.070 0.930 46 H 0.098 0.902 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 18.455 -16.113 -5.627 25.137 hybrid contribution -1.284 -0.738 0.250 1.502 sum 17.171 -16.851 -5.377 24.651 Atomic orbital electron populations 1.21851 0.95499 1.01859 1.02318 1.21534 0.96181 0.95521 1.02199 1.21581 0.96197 0.96219 0.98296 0.90560 1.21568 0.94833 0.96662 1.02022 1.22036 1.00998 0.95790 0.98239 1.21065 0.78922 0.97911 0.96334 0.91707 1.22193 0.98355 0.93401 1.05220 1.47329 1.07644 1.05348 1.76573 1.16004 0.81343 0.84113 0.78064 1.90961 1.71256 1.24616 1.59361 1.45685 1.07731 1.10772 1.75867 1.21486 0.90044 0.85881 1.01440 1.21884 0.92063 1.01583 1.00275 1.19029 0.93284 0.91495 0.97564 1.21243 0.93686 0.92921 1.48095 0.92624 1.25033 0.99041 0.94949 0.95471 1.69972 1.33372 0.99927 1.49989 0.86534 0.84794 0.78690 0.77960 1.19769 1.21006 1.21015 1.21702 0.98229 0.83408 0.97427 0.92625 0.92376 0.92492 0.91708 0.91808 0.91734 0.91834 0.91403 0.90884 0.90865 0.94457 0.90736 0.77410 0.91933 0.92132 0.92897 0.92843 0.96236 0.96266 0.92992 0.90151 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 9.67 37.16 0.36 -0.76 16 2 C -0.12 -0.76 5.41 -26.73 -0.14 -0.90 16 3 C -0.10 -0.82 2.34 -90.49 -0.21 -1.03 16 4 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 5 C -0.11 -0.82 5.17 -26.69 -0.14 -0.96 16 6 C -0.13 -1.13 5.37 -26.61 -0.14 -1.28 16 7 C 0.16 1.74 3.49 -67.60 -0.24 1.51 16 8 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 9 C -0.13 -1.71 7.59 37.16 0.28 -1.43 16 10 N -0.63 -7.67 2.97 -170.92 -0.51 -8.18 16 11 C 0.70 11.17 8.21 -86.91 -0.71 10.46 16 12 O -0.58 -11.12 11.75 5.29 0.06 -11.06 16 13 N -0.74 -11.38 5.42 -65.22 -0.35 -11.74 16 14 C 0.13 2.46 5.68 -4.04 -0.02 2.43 16 15 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 16 C 0.02 0.61 4.97 -27.88 -0.14 0.48 16 17 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 16 18 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 21 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 C 0.12 1.07 5.24 -3.72 -0.02 1.05 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.42 6.70 -51.93 -0.35 0.07 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 1.10 6.79 -51.93 -0.35 0.75 16 36 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 1.12 6.70 -51.93 -0.35 0.78 16 38 H 0.39 5.00 6.06 -40.82 -0.25 4.75 16 39 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.08 0.73 4.46 -51.93 -0.23 0.50 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 360.59 15.07 5.43 5.43 Total: -1.00 -31.67 360.59 -10.01 -41.68 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -8.68 Total: -0.07 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -1.68 Total: -6.37 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: -0.13 Total: -46.12 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.06 Total: -11.06 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.67 -10.01 -41.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595490180.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.170 kcal (2) G-P(sol) polarization free energy of solvation -31.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds