Wall clock time and date at job start Tue Mar 31 2020 05:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46756 * 2 1 4 4 H 1.09000 * 109.49421 * 305.06379 * 3 2 1 5 5 C 1.53044 * 109.49531 * 185.00078 * 3 2 1 6 6 C 1.53045 * 109.53577 * 178.65153 * 5 3 2 7 7 C 1.53189 * 109.31226 * 61.36205 * 6 5 3 8 8 H 1.09004 * 109.58504 * 65.29705 * 7 6 5 9 9 C 1.53001 * 109.58532 * 185.57785 * 7 6 5 10 10 N 1.46924 * 108.77848 * 305.36840 * 7 6 5 11 11 C 1.34783 * 120.62657 * 233.61121 * 10 7 6 12 12 O 1.21587 * 120.00074 * 5.05790 * 11 10 7 13 13 N 1.34774 * 119.99584 * 185.06141 * 11 10 7 14 14 C 1.46500 * 119.99822 * 185.12627 * 13 11 10 15 15 C 1.52997 * 109.47128 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.47279 * 180.02562 * 15 14 13 17 17 C 1.50694 * 109.47025 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00620 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99702 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00322 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99883 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47330 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47134 * 119.99591 * 21 19 17 24 24 H 1.48498 * 109.47121 * 239.99587 * 21 19 17 25 25 C 1.46918 * 118.74020 * 53.60709 * 10 7 6 26 26 H 1.09000 * 109.46928 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46922 * 299.99881 * 1 2 3 28 28 H 1.09001 * 109.46931 * 60.00327 * 1 2 3 29 29 H 1.09004 * 109.47331 * 240.00334 * 2 1 3 30 30 H 1.09000 * 109.47453 * 119.99666 * 2 1 3 31 31 H 1.08997 * 109.45927 * 58.63089 * 5 3 2 32 32 H 1.08998 * 109.45808 * 298.67238 * 5 3 2 33 33 H 1.09008 * 109.49698 * 301.41283 * 6 5 3 34 34 H 1.08994 * 109.49263 * 181.31709 * 6 5 3 35 35 H 1.09001 * 109.47253 * 62.83028 * 9 7 6 36 36 H 1.09006 * 109.47179 * 302.82484 * 9 7 6 37 37 H 1.09005 * 109.46953 * 182.83250 * 9 7 6 38 38 H 0.97005 * 120.00406 * 5.12934 * 13 11 10 39 39 H 1.09011 * 109.47121 * 300.00150 * 14 13 11 40 40 H 1.08999 * 109.47547 * 60.00034 * 14 13 11 41 41 H 1.09002 * 109.46872 * 299.99509 * 15 14 13 42 42 H 1.09003 * 109.47751 * 59.99961 * 15 14 13 43 43 H 1.09002 * 109.46600 * 299.99470 * 16 15 14 44 44 H 1.08999 * 109.47214 * 59.99648 * 16 15 14 45 45 H 0.96995 * 120.00527 * 180.02562 * 20 19 17 46 46 H 1.09000 * 109.58794 * 186.60785 * 25 10 7 47 47 H 1.08998 * 109.70664 * 66.24765 * 25 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6046 1.9823 -0.8410 5 6 3.5652 1.4452 -0.1258 6 6 4.0735 2.8883 -0.1597 7 6 3.6950 3.5897 1.1486 8 1 4.2227 3.1220 1.9798 9 6 4.0763 5.0691 1.0664 10 7 2.2449 3.4652 1.3496 11 6 1.4854 4.5574 1.5659 12 8 1.9825 5.6653 1.5050 13 7 0.1749 4.4214 1.8498 14 6 -0.6747 5.6084 1.9741 15 6 -2.1069 5.1788 2.2982 16 6 -2.9944 6.4185 2.4273 17 6 -4.4051 5.9953 2.7459 18 1 -4.6450 4.9471 2.8459 19 6 -5.3900 6.9464 2.9088 20 7 -5.0981 8.2229 2.7866 21 14 -7.1390 6.4218 3.3031 22 1 -7.2046 4.9407 3.3866 23 1 -7.5511 7.0100 4.6028 24 1 -8.0517 6.8978 2.2328 25 6 1.6385 2.1276 1.3101 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8546 0.9365 -1.0453 32 1 4.0008 0.9267 0.7283 33 1 3.6190 3.4145 -0.9992 34 1 5.1576 2.8896 -0.2728 35 1 3.5063 5.5475 0.2699 36 1 5.1419 5.1585 0.8548 37 1 3.8524 5.5553 2.0159 38 1 -0.2058 3.5376 1.9719 39 1 -0.2963 6.2439 2.7749 40 1 -0.6648 6.1623 1.0353 41 1 -2.4855 4.5433 1.4977 42 1 -2.1166 4.6252 3.2371 43 1 -2.6159 7.0544 3.2276 44 1 -2.9847 6.9717 1.4882 45 1 -5.7909 8.8920 2.9016 46 1 0.5532 2.2168 1.3581 47 1 1.9943 1.5377 2.1548 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595490180.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:56 Heat of formation + Delta-G solvation = -66.083003 kcal Electronic energy + Delta-G solvation = -22944.576445 eV Core-core repulsion = 19739.876756 eV Total energy + Delta-G solvation = -3204.699689 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.75583 -39.07659 -37.18997 -35.66820 -35.22905 -34.03183 -32.50189 -31.40155 -28.64110 -27.75401 -26.08713 -25.05707 -23.65436 -22.38218 -22.24907 -21.31327 -20.52369 -18.74220 -18.45112 -17.37917 -16.91917 -16.52149 -16.09748 -15.81291 -15.59394 -15.37781 -14.91546 -14.66169 -14.55906 -14.36650 -14.20321 -13.73644 -13.55153 -13.44665 -13.21381 -13.12001 -12.92302 -12.77152 -12.52562 -12.33074 -12.19620 -12.01573 -11.89876 -11.68134 -11.56473 -11.50642 -11.46271 -11.20274 -11.16345 -10.56176 -10.30268 -10.09682 -9.41661 -8.19366 -6.30939 1.41827 1.42083 1.55294 1.64583 2.14859 2.41945 2.94028 3.14404 3.70217 3.82670 3.87203 3.97492 4.16006 4.18964 4.22128 4.31089 4.43215 4.45692 4.54901 4.59733 4.65687 4.70687 4.79025 4.81883 4.94881 4.97841 4.99610 5.04616 5.10885 5.15477 5.18079 5.18832 5.24936 5.34844 5.38753 5.44678 5.49295 5.56254 5.60951 5.70397 5.76227 5.83972 5.96630 6.22582 6.86194 6.99606 7.38630 7.60604 8.93067 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020726 B = 0.003347 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.631553 B = 8363.161206 C = 9546.922374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.109 4.109 3 C -0.099 4.099 4 H 0.057 0.943 5 C -0.109 4.109 6 C -0.126 4.126 7 C 0.155 3.845 8 H 0.085 0.915 9 C -0.127 4.127 10 N -0.624 5.624 11 C 0.695 3.305 12 O -0.622 6.622 13 N -0.736 5.736 14 C 0.151 3.849 15 C -0.100 4.100 16 C 0.024 3.976 17 C -0.540 4.540 18 H 0.067 0.933 19 C -0.004 4.004 20 N -0.935 5.935 21 Si 0.968 3.032 22 H -0.258 1.258 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.110 3.890 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.093 0.907 35 H 0.042 0.958 36 H 0.062 0.938 37 H 0.044 0.956 38 H 0.405 0.595 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.066 0.934 42 H 0.066 0.934 43 H -0.008 1.008 44 H -0.008 1.008 45 H 0.263 0.737 46 H 0.080 0.920 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.553 -20.491 -5.470 28.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.147 4.147 3 C -0.119 4.119 4 H 0.076 0.924 5 C -0.146 4.146 6 C -0.164 4.164 7 C 0.053 3.947 8 H 0.103 0.897 9 C -0.184 4.184 10 N -0.362 5.362 11 C 0.397 3.603 12 O -0.504 6.504 13 N -0.394 5.394 14 C 0.026 3.974 15 C -0.138 4.138 16 C -0.013 4.013 17 C -0.578 4.578 18 H 0.085 0.915 19 C -0.202 4.202 20 N -0.576 5.576 21 Si 0.792 3.208 22 H -0.181 1.181 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.013 4.013 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.112 0.888 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.243 0.757 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.010 0.990 44 H 0.010 0.990 45 H 0.072 0.928 46 H 0.098 0.902 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 18.837 -19.528 -5.516 27.688 hybrid contribution -1.327 0.323 0.195 1.379 sum 17.510 -19.205 -5.321 26.529 Atomic orbital electron populations 1.21879 0.96148 1.02114 1.01703 1.21485 0.95531 0.94431 1.03238 1.21533 0.96909 0.96781 0.96627 0.92424 1.21565 0.93988 0.95656 1.03426 1.21988 1.02201 0.96300 0.95932 1.21282 0.78139 0.96844 0.98471 0.89723 1.22013 0.99398 0.94563 1.02419 1.47419 1.08056 1.05481 1.75206 1.16232 0.81447 0.84580 0.78071 1.90956 1.71986 1.26524 1.60919 1.45375 1.07533 1.10450 1.76020 1.21039 0.89690 0.86670 0.99964 1.21582 0.91686 0.99030 1.01456 1.18936 0.94044 0.93292 0.95061 1.21699 0.94723 0.93547 1.47783 0.91517 1.26037 1.04037 0.94877 0.95207 1.70118 1.35046 1.01310 1.51098 0.85353 0.78699 0.79023 0.77681 1.18131 1.20574 1.20569 1.21972 0.98224 0.81958 0.99103 0.91950 0.92620 0.93528 0.90878 0.90497 0.90379 0.90287 0.93221 0.88814 0.93892 0.91976 0.93649 0.75699 0.93633 0.93707 0.91516 0.91525 0.98972 0.98965 0.92811 0.90230 0.89545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.67 71.98 0.70 -1.25 16 2 C -0.11 -1.09 5.41 30.60 0.17 -0.92 16 3 C -0.10 -1.32 2.34 -10.71 -0.03 -1.35 16 4 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 5 C -0.11 -1.21 5.17 30.62 0.16 -1.05 16 6 C -0.13 -1.88 5.37 30.67 0.16 -1.72 16 7 C 0.16 3.13 3.49 44.97 0.16 3.29 16 8 H 0.08 1.42 8.14 -2.38 -0.02 1.41 16 9 C -0.13 -3.26 7.59 71.98 0.55 -2.71 16 10 N -0.62 -14.58 2.97 -812.91 -2.42 -16.99 16 11 C 0.69 22.34 8.21 179.05 1.47 23.81 16 12 O -0.62 -24.83 11.75 -3.99 -0.05 -24.88 16 13 N -0.74 -22.45 5.42 -478.53 -2.59 -25.05 16 14 C 0.15 5.67 5.68 86.38 0.49 6.16 16 15 C -0.10 -3.96 5.27 30.60 0.16 -3.80 16 16 C 0.02 1.29 4.97 29.85 0.15 1.44 16 17 C -0.54 -30.39 9.11 25.60 0.23 -30.16 16 18 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 19 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 20 N -0.94 -57.64 13.29 21.45 0.28 -57.36 16 21 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 22 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 25 C 0.11 1.77 5.24 86.36 0.45 2.23 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.05 0.69 6.70 -2.39 -0.02 0.67 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.08 0.71 8.14 -2.39 -0.02 0.70 16 32 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.04 1.35 6.79 -2.39 -0.02 1.33 16 36 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.04 1.42 6.70 -2.38 -0.02 1.40 16 38 H 0.40 9.87 6.06 -92.70 -0.56 9.31 16 39 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 43 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 44 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 45 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 46 H 0.08 1.29 4.46 -2.39 -0.01 1.28 16 47 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -70.70 360.59 2.89 -67.81 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 0.36 Total: 16.21 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: 5.28 Total: -5.80 kcal Atomic # 7 Polarization: -94.67 SS G_CDS: -4.72 Total: -99.40 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.05 Total: -24.88 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -70.70 2.89 -67.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595490180.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.725 kcal (2) G-P(sol) polarization free energy of solvation -70.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds