Wall clock time and date at job start Tue Mar 31 2020 05:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47332 * 2 1 4 4 H 1.09005 * 109.46976 * 304.99878 * 3 2 1 5 5 N 1.46497 * 109.46971 * 64.99834 * 3 2 1 6 6 C 1.34782 * 119.99842 * 204.81922 * 5 3 2 7 7 O 1.21592 * 119.99518 * 0.02562 * 6 5 3 8 8 N 1.34776 * 119.99919 * 180.02562 * 6 5 3 9 9 C 1.46504 * 119.99676 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.46810 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.47128 * 299.99656 * 10 9 8 12 12 C 1.52996 * 109.47625 * 59.99686 * 10 9 8 13 13 C 1.53003 * 109.47201 * 180.02562 * 10 9 8 14 14 C 1.50693 * 109.47174 * 179.97438 * 13 10 9 15 15 H 1.07997 * 120.00143 * 0.02562 * 14 13 10 16 16 C 1.37879 * 120.00018 * 179.97438 * 14 13 10 17 17 N 1.31515 * 119.99976 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00069 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47471 * 60.00213 * 18 16 14 20 20 H 1.48507 * 109.47249 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47095 * 299.99899 * 18 16 14 22 22 C 1.52996 * 109.47168 * 184.99942 * 3 2 1 23 23 C 1.53004 * 117.49754 * 133.28574 * 22 3 2 24 24 C 1.53002 * 117.49771 * 64.62921 * 22 3 2 25 25 H 1.08998 * 109.47233 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46800 * 59.99908 * 1 2 3 27 27 H 1.08998 * 109.46724 * 300.00484 * 1 2 3 28 28 H 1.08998 * 109.47494 * 119.99824 * 2 1 3 29 29 H 1.09001 * 109.47336 * 239.99936 * 2 1 3 30 30 H 0.96993 * 120.00130 * 24.82039 * 5 3 2 31 31 H 0.96993 * 120.00053 * 359.97438 * 8 6 5 32 32 H 1.09000 * 109.47062 * 299.99495 * 9 8 6 33 33 H 1.08998 * 109.47377 * 59.99818 * 9 8 6 34 34 H 1.09008 * 109.47329 * 59.99921 * 11 10 9 35 35 H 1.08997 * 109.47687 * 180.02562 * 11 10 9 36 36 H 1.09006 * 109.47218 * 300.00465 * 11 10 9 37 37 H 1.09000 * 109.47192 * 60.00093 * 12 10 9 38 38 H 1.09001 * 109.47624 * 180.02562 * 12 10 9 39 39 H 1.09007 * 109.47183 * 300.00116 * 12 10 9 40 40 H 1.09000 * 109.46852 * 299.99439 * 13 10 9 41 41 H 1.08998 * 109.47196 * 59.99523 * 13 10 9 42 42 H 0.96999 * 120.00478 * 180.02562 * 17 16 14 43 43 H 1.08997 * 115.55004 * 278.95902 * 22 3 2 44 44 H 1.08998 * 117.50017 * 0.02562 * 23 22 3 45 45 H 1.09000 * 117.49814 * 145.02203 * 23 22 3 46 46 H 1.09002 * 117.49483 * 214.97699 * 24 22 3 47 47 H 1.08999 * 117.49886 * 359.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8419 5 7 1.6525 2.0975 1.2518 6 6 1.5292 3.4388 1.3005 7 8 1.7393 4.1051 0.3053 8 7 1.1732 4.0414 2.4522 9 6 1.0387 5.4993 2.5049 10 6 0.6289 5.9229 3.9169 11 6 -0.7094 5.2740 4.2757 12 6 1.6977 5.4728 4.9148 13 6 0.4878 7.4454 3.9718 14 6 0.0835 7.8625 5.3623 15 1 -0.0581 7.1164 6.1302 16 6 -0.1044 9.1968 5.6546 17 7 0.0686 10.1054 4.7197 18 14 -0.6048 9.7139 7.3784 19 1 0.4327 9.2773 8.3470 20 1 -0.7419 11.1917 7.4317 21 1 -1.9036 9.0840 7.7267 22 6 3.5648 1.4443 -0.1257 23 6 4.1889 2.4040 -1.1409 24 6 4.1674 0.8995 -1.4223 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.4846 1.5659 2.0455 31 1 1.0052 3.5098 3.2459 32 1 1.9922 5.9616 2.2497 33 1 0.2775 5.8200 1.7937 34 1 -0.6094 4.1892 4.2364 35 1 -1.0017 5.5760 5.2814 36 1 -1.4710 5.5946 3.5647 37 1 2.6511 5.9351 4.6592 38 1 1.4055 5.7742 5.9208 39 1 1.7977 4.3881 4.8756 40 1 1.4410 7.9080 3.7161 41 1 -0.2739 7.7656 3.2610 42 1 -0.0633 11.0442 4.9253 43 1 4.1130 1.2636 0.7989 44 1 3.5131 3.0344 -1.7189 45 1 5.1477 2.8543 -0.8843 46 1 5.1122 0.3607 -1.3506 47 1 3.4776 0.5394 -2.1855 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595627803.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:47 Heat of formation + Delta-G solvation = -35.977282 kcal Electronic energy + Delta-G solvation = -22800.745335 eV Core-core repulsion = 19597.351128 eV Total energy + Delta-G solvation = -3203.394207 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.05849 -38.17786 -36.90982 -34.84479 -33.51268 -32.37413 -31.69391 -27.37321 -26.89350 -26.48449 -25.60176 -22.97431 -22.65408 -21.87168 -20.77265 -20.34943 -18.75849 -17.55071 -16.69452 -16.25774 -15.59960 -15.08153 -14.70313 -14.53585 -14.42706 -14.19992 -13.66556 -13.52572 -13.08338 -12.95044 -12.71222 -12.59615 -12.16854 -12.04089 -11.68045 -11.59093 -11.41928 -11.17209 -11.08912 -10.98241 -10.85900 -10.60849 -10.55530 -10.36633 -10.24547 -10.06212 -9.89965 -9.84407 -9.17255 -9.06897 -8.91412 -8.49071 -8.34072 -5.98221 -3.99553 2.89255 3.32808 3.38256 3.39424 3.49207 3.70590 4.42209 4.46638 4.52810 4.69976 4.83149 4.93053 5.02654 5.05613 5.27082 5.37133 5.47115 5.52308 5.56832 5.62472 5.67962 5.68882 5.77993 5.79528 5.89365 6.01115 6.04441 6.14499 6.20888 6.25795 6.33016 6.45137 6.61011 6.64194 6.65375 6.85730 7.09279 7.10169 7.12031 7.20324 7.66372 7.79276 8.00574 8.27372 8.42565 8.89040 9.05161 9.63342 11.13245 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032278 B = 0.003088 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.252292 B = 9066.036415 C = 9465.285375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C 0.196 3.804 4 H 0.087 0.913 5 N -0.744 5.744 6 C 0.700 3.300 7 O -0.590 6.590 8 N -0.739 5.739 9 C 0.148 3.852 10 C -0.073 4.073 11 C -0.125 4.125 12 C -0.125 4.125 13 C 0.037 3.963 14 C -0.512 4.512 15 H 0.059 0.941 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.889 3.111 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.166 4.166 23 C -0.164 4.164 24 C -0.180 4.180 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.392 0.608 31 H 0.392 0.608 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.028 0.972 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.065 0.935 39 H 0.028 0.972 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.260 0.740 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.089 0.911 46 H 0.091 0.909 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.069 -21.656 -7.744 23.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C 0.090 3.910 4 H 0.105 0.895 5 N -0.399 5.399 6 C 0.400 3.600 7 O -0.468 6.468 8 N -0.394 5.394 9 C 0.025 3.975 10 C -0.073 4.073 11 C -0.183 4.183 12 C -0.183 4.183 13 C -0.001 4.001 14 C -0.550 4.550 15 H 0.077 0.923 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.717 3.283 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.185 4.185 23 C -0.201 4.201 24 C -0.218 4.218 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.225 0.775 31 H 0.227 0.773 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.047 0.953 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.084 0.916 39 H 0.047 0.953 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.070 0.930 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.107 0.893 46 H 0.110 0.890 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.238 -20.799 -8.702 22.941 hybrid contribution -0.334 -0.036 1.759 1.790 sum 3.904 -20.835 -6.943 22.306 Atomic orbital electron populations 1.21774 0.95278 1.01506 1.02457 1.21779 0.96312 0.95442 1.03011 1.20324 0.91160 0.92422 0.87122 0.89476 1.45153 1.75663 1.05576 1.13548 1.16022 0.78171 0.81675 0.84118 1.90900 1.57673 1.63666 1.34584 1.45371 1.73918 1.09066 1.11012 1.21452 1.01061 0.76796 0.98224 1.20911 0.94709 1.00319 0.91368 1.21747 0.96946 0.96917 1.02657 1.21743 0.98407 0.97514 1.00595 1.19078 0.97362 0.86297 0.97341 1.21150 1.46120 0.91788 0.95925 0.92337 1.25011 0.95761 0.96924 0.96781 1.69954 1.49693 1.01006 1.32751 0.86715 0.79045 0.77424 0.85129 1.20344 1.21403 1.20348 1.22718 0.95852 1.05717 0.94239 1.22946 1.02467 0.92049 1.02620 1.22938 1.02386 0.97466 0.98991 0.92668 0.92593 0.92430 0.91466 0.90412 0.77475 0.77318 0.92129 0.92133 0.95332 0.91551 0.93410 0.93413 0.91561 0.95332 0.96348 0.96342 0.92985 0.88094 0.88217 0.89253 0.89036 0.88881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.80 37.16 0.36 -0.77 16 2 C -0.13 -0.92 5.42 -26.73 -0.14 -1.06 16 3 C 0.20 1.97 2.16 -67.93 -0.15 1.83 16 4 H 0.09 1.09 7.38 -51.93 -0.38 0.70 16 5 N -0.74 -8.17 4.54 -58.67 -0.27 -8.44 16 6 C 0.70 10.73 8.53 -86.91 -0.74 9.99 16 7 O -0.59 -11.45 16.01 5.28 0.08 -11.36 16 8 N -0.74 -10.89 4.96 -65.22 -0.32 -11.22 16 9 C 0.15 2.68 4.56 -4.04 -0.02 2.66 16 10 C -0.07 -1.39 0.54 -154.51 -0.08 -1.47 16 11 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 12 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 13 C 0.04 0.91 4.04 -27.88 -0.11 0.79 16 14 C -0.51 -13.62 7.65 -34.44 -0.26 -13.89 16 15 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 16 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 17 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 18 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C -0.17 -1.67 5.36 -90.62 -0.49 -2.15 16 23 C -0.16 -1.82 10.18 -26.69 -0.27 -2.09 16 24 C -0.18 -1.53 9.73 -26.69 -0.26 -1.79 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.46 7.75 -51.93 -0.40 0.06 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.50 7.45 -51.93 -0.39 0.11 16 30 H 0.39 3.28 8.61 -40.82 -0.35 2.93 16 31 H 0.39 4.85 6.18 -40.82 -0.25 4.60 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.03 0.41 6.86 -51.92 -0.36 0.05 16 35 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 39 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.10 1.27 8.08 -51.93 -0.42 0.85 16 45 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.09 0.70 7.88 -51.93 -0.41 0.29 16 LS Contribution 371.16 15.07 5.59 5.59 Total: -1.00 -31.10 371.16 -9.37 -40.47 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -8.51 Total: 4.84 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -1.66 Total: -10.29 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.15 Total: -45.47 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.08 Total: -11.36 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.10 -9.37 -40.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595627803.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.491 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds