Wall clock time and date at job start Tue Mar 31 2020 05:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47246 * 2 1 4 4 H 1.09005 * 109.47216 * 54.99807 * 3 2 1 5 5 C 1.53004 * 109.47357 * 295.00156 * 3 2 1 6 6 C 1.52994 * 109.47301 * 175.00163 * 3 2 1 7 7 C 1.53001 * 109.47219 * 185.00291 * 6 3 2 8 8 N 1.46501 * 109.47022 * 179.97438 * 7 6 3 9 9 C 1.34779 * 119.99788 * 180.27238 * 8 7 6 10 10 O 1.21586 * 120.00263 * 354.80286 * 9 8 7 11 11 N 1.34775 * 119.99585 * 174.79923 * 9 8 7 12 12 C 1.46923 * 120.63669 * 5.22565 * 11 9 8 13 13 C 1.53191 * 108.77634 * 126.36392 * 12 11 9 14 14 C 1.53037 * 109.31166 * 54.64112 * 13 12 11 15 15 C 1.53042 * 109.53810 * 298.62927 * 14 13 12 16 16 H 1.08997 * 109.49745 * 301.41720 * 15 14 13 17 17 C 1.50696 * 109.49870 * 181.35119 * 15 14 13 18 18 H 1.07997 * 120.00026 * 0.02562 * 17 15 14 19 19 C 1.37879 * 119.99754 * 180.02562 * 17 15 14 20 20 N 1.31512 * 120.00477 * 0.02562 * 19 17 15 21 21 Si 1.86807 * 119.99706 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47016 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47059 * 120.00163 * 21 19 17 24 24 H 1.48503 * 109.47148 * 239.99568 * 21 19 17 25 25 C 1.46935 * 120.62794 * 184.94361 * 11 9 8 26 26 H 1.08997 * 109.47138 * 300.00114 * 1 2 3 27 27 H 1.09005 * 109.46836 * 59.99912 * 1 2 3 28 28 H 1.09000 * 109.47347 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47036 * 240.00198 * 2 1 3 30 30 H 1.08996 * 109.47036 * 120.00330 * 2 1 3 31 31 H 1.08998 * 109.47074 * 299.99942 * 5 3 2 32 32 H 1.09003 * 109.46992 * 59.99932 * 5 3 2 33 33 H 1.08993 * 109.47447 * 179.97438 * 5 3 2 34 34 H 1.09001 * 109.47372 * 64.99758 * 6 3 2 35 35 H 1.09006 * 109.47142 * 304.99820 * 6 3 2 36 36 H 1.08995 * 109.47136 * 59.99842 * 7 6 3 37 37 H 1.09005 * 109.47118 * 299.99507 * 7 6 3 38 38 H 0.97004 * 120.00174 * 359.97438 * 8 7 6 39 39 H 1.08995 * 109.58741 * 246.15652 * 12 11 9 40 40 H 1.09004 * 109.58229 * 6.57857 * 12 11 9 41 41 H 1.09004 * 109.49752 * 174.59106 * 13 12 11 42 42 H 1.09000 * 109.50280 * 294.68820 * 13 12 11 43 43 H 1.08999 * 109.46318 * 58.64907 * 14 13 12 44 44 H 1.09006 * 109.46066 * 178.61513 * 14 13 12 45 45 H 0.96992 * 120.00439 * 179.97438 * 20 19 17 46 46 H 1.09004 * 109.58406 * 353.41979 * 25 11 9 47 47 H 1.08991 * 109.58243 * 113.84674 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1266 -1.3073 6 6 3.5648 1.4443 0.1257 7 6 4.0645 2.8850 0.2511 8 7 5.5245 2.8866 0.3721 9 6 6.1887 4.0524 0.5007 10 8 5.5878 5.1064 0.4217 11 7 7.5190 4.0496 0.7170 12 6 8.2774 2.7914 0.7015 13 6 9.4422 2.9299 -0.2839 14 6 10.2738 4.1604 0.0852 15 6 9.4037 5.4153 -0.0161 16 1 9.0135 5.5067 -1.0297 17 6 10.2320 6.6298 0.3153 18 1 11.2750 6.5184 0.5722 19 6 9.6582 7.8833 0.2906 20 7 8.3879 8.0190 -0.0217 21 14 10.6849 9.3887 0.7022 22 1 12.0737 8.9692 1.0189 23 1 10.6990 10.3113 -0.4613 24 1 10.0977 10.0823 1.8767 25 6 8.2394 5.3056 0.9668 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.0699 1.5876 -2.1492 32 1 0.5490 2.1253 -1.3969 33 1 1.9982 3.1543 -1.3072 34 1 4.0030 0.9835 -0.7597 35 1 3.8571 0.8800 1.0113 36 1 3.6264 3.3457 1.1365 37 1 3.7723 3.4493 -0.6345 38 1 6.0129 2.0485 0.3640 39 1 8.6653 2.5862 1.6992 40 1 7.6264 1.9762 0.3855 41 1 10.0686 2.0392 -0.2343 42 1 9.0517 3.0446 -1.2950 43 1 10.6434 4.0563 1.1053 44 1 11.1174 4.2473 -0.5996 45 1 7.9842 8.9008 -0.0387 46 1 7.5632 6.1489 0.8257 47 1 8.6240 5.3096 1.9866 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595725890.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:13 Heat of formation + Delta-G solvation = -58.249655 kcal Electronic energy + Delta-G solvation = -22862.951160 eV Core-core repulsion = 19658.591150 eV Total energy + Delta-G solvation = -3204.360010 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.67460 -37.73547 -36.67127 -34.34041 -33.25848 -31.77551 -30.88794 -29.67591 -28.01632 -25.51779 -24.99461 -23.99738 -22.01471 -21.69829 -20.36611 -19.82709 -18.65819 -17.43587 -16.19479 -15.84836 -15.70370 -15.07382 -14.56655 -14.54322 -14.10921 -13.76421 -13.67254 -13.46726 -13.41143 -12.78527 -12.71022 -12.53530 -12.21812 -12.13023 -11.92390 -11.83488 -11.75236 -11.20598 -10.96714 -10.88078 -10.83859 -10.72275 -10.61278 -10.44989 -10.35514 -10.18971 -9.83069 -9.36782 -9.04971 -8.89013 -8.64873 -8.37612 -7.57763 -5.93689 -4.03102 3.28551 3.34991 3.41557 3.44534 3.92239 4.39648 4.48433 4.55943 4.63852 4.74461 5.03092 5.12554 5.28067 5.30628 5.35701 5.37048 5.40125 5.51330 5.53629 5.60969 5.65329 5.74745 5.80641 5.83166 5.90757 5.97895 5.99599 6.05995 6.19524 6.22856 6.27918 6.35123 6.63205 6.71764 6.85232 6.91853 7.03624 7.09884 7.41801 7.57254 7.80258 7.98513 8.12367 8.46008 8.66395 9.00999 9.33635 9.62335 11.11124 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028468 B = 0.003285 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.339323 B = 8520.607843 C = 9259.924901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.089 4.089 4 H 0.073 0.927 5 C -0.154 4.154 6 C -0.126 4.126 7 C 0.138 3.862 8 N -0.759 5.759 9 C 0.699 3.301 10 O -0.583 6.583 11 N -0.624 5.624 12 C 0.116 3.884 13 C -0.133 4.133 14 C -0.110 4.110 15 C 0.038 3.962 16 H 0.028 0.972 17 C -0.520 4.520 18 H 0.058 0.942 19 C 0.062 3.938 20 N -0.878 5.878 21 Si 0.891 3.109 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.128 3.872 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.389 0.611 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.049 0.951 44 H 0.050 0.950 45 H 0.262 0.738 46 H 0.123 0.877 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.450 -17.606 0.341 20.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.108 4.108 4 H 0.091 0.909 5 C -0.211 4.211 6 C -0.164 4.164 7 C 0.014 3.986 8 N -0.418 5.418 9 C 0.400 3.600 10 O -0.460 6.460 11 N -0.360 5.360 12 C -0.008 4.008 13 C -0.172 4.172 14 C -0.147 4.147 15 C 0.019 3.981 16 H 0.046 0.954 17 C -0.559 4.559 18 H 0.076 0.924 19 C -0.141 4.141 20 N -0.515 5.515 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.210 1.210 25 C 0.008 3.992 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.225 0.775 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.141 0.859 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -11.042 -16.645 0.285 19.977 hybrid contribution 0.807 0.348 0.197 0.901 sum -10.235 -16.297 0.482 19.250 Atomic orbital electron populations 1.21828 0.95950 1.01381 1.02012 1.21569 0.95871 0.96274 1.01913 1.21086 0.94483 0.96252 0.98940 0.90859 1.21971 1.01210 1.01098 0.96823 1.21851 0.95720 0.96453 1.02360 1.21150 0.79445 0.96129 1.01916 1.45359 1.07197 1.07774 1.81516 1.15975 0.82070 0.83721 0.78238 1.90925 1.67256 1.29974 1.57827 1.47781 1.04963 1.09241 1.74054 1.21476 0.93724 0.86252 0.99363 1.21948 0.96939 0.99185 0.99113 1.21613 0.98126 0.94968 1.00028 1.18915 0.91832 0.91421 0.95924 0.95387 1.21105 0.96300 0.90667 1.47845 0.92357 1.25070 0.94975 0.99071 0.94994 1.69911 1.10810 1.23398 1.47402 0.86554 0.80418 0.83115 0.78018 1.19830 1.21051 1.20999 1.22079 0.95986 0.83684 0.97471 0.92760 0.92431 0.93011 0.92025 0.92073 0.92705 0.92558 0.91973 0.91415 0.91505 0.92257 0.91679 0.77529 0.92238 0.92206 0.92379 0.92224 0.93220 0.93098 0.92738 0.85889 0.94346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.67 37.16 0.36 -0.67 16 2 C -0.12 -0.85 5.40 -26.73 -0.14 -1.00 16 3 C -0.09 -0.75 2.39 -90.62 -0.22 -0.96 16 4 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 5 C -0.15 -1.35 8.70 37.16 0.32 -1.02 16 6 C -0.13 -1.17 4.80 -26.73 -0.13 -1.30 16 7 C 0.14 1.85 5.44 -4.04 -0.02 1.83 16 8 N -0.76 -11.76 5.47 -65.22 -0.36 -12.12 16 9 C 0.70 14.83 8.29 -86.92 -0.72 14.11 16 10 O -0.58 -15.21 15.77 5.29 0.08 -15.13 16 11 N -0.62 -12.96 2.98 -178.76 -0.53 -13.50 16 12 C 0.12 1.83 6.39 -3.71 -0.02 1.81 16 13 C -0.13 -2.18 6.08 -26.61 -0.16 -2.34 16 14 C -0.11 -2.21 5.11 -26.69 -0.14 -2.35 16 15 C 0.04 0.97 2.24 -91.87 -0.21 0.76 16 16 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 17 C -0.52 -14.33 8.57 -34.44 -0.30 -14.62 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 19 C 0.06 1.74 5.31 -17.82 -0.09 1.65 16 20 N -0.88 -26.16 11.39 55.43 0.63 -25.53 16 21 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 C 0.13 3.21 5.39 -3.93 -0.02 3.19 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.38 6.57 -51.93 -0.34 0.04 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.44 6.57 -51.93 -0.34 0.10 16 33 H 0.06 0.62 6.57 -51.93 -0.34 0.28 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.96 6.57 -51.93 -0.34 0.62 16 38 H 0.39 4.87 5.96 -40.82 -0.24 4.62 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.75 5.65 -51.93 -0.29 0.45 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.12 3.61 5.10 -51.93 -0.26 3.35 16 47 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 359.52 15.07 5.42 5.42 Total: -1.00 -32.39 359.52 -9.74 -42.13 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -8.47 Total: 3.12 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -1.49 Total: -0.92 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -0.26 Total: -51.15 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: 0.08 Total: -15.13 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.39 -9.74 -42.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595725890.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.123 kcal (2) G-P(sol) polarization free energy of solvation -32.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds