Wall clock time and date at job start Tue Mar 31 2020 05:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47246 * 2 1 4 4 H 1.09005 * 109.47216 * 54.99807 * 3 2 1 5 5 C 1.53004 * 109.47357 * 295.00156 * 3 2 1 6 6 C 1.52994 * 109.47301 * 175.00163 * 3 2 1 7 7 C 1.53001 * 109.47219 * 185.00291 * 6 3 2 8 8 N 1.46501 * 109.47022 * 179.97438 * 7 6 3 9 9 C 1.34779 * 119.99788 * 180.27238 * 8 7 6 10 10 O 1.21586 * 120.00263 * 354.80286 * 9 8 7 11 11 N 1.34775 * 119.99585 * 174.79923 * 9 8 7 12 12 C 1.46923 * 120.63669 * 5.22565 * 11 9 8 13 13 C 1.53191 * 108.77634 * 126.36392 * 12 11 9 14 14 C 1.53037 * 109.31166 * 54.64112 * 13 12 11 15 15 C 1.53042 * 109.53810 * 298.62927 * 14 13 12 16 16 H 1.08997 * 109.49745 * 301.41720 * 15 14 13 17 17 C 1.50696 * 109.49870 * 181.35119 * 15 14 13 18 18 H 1.07997 * 120.00026 * 0.02562 * 17 15 14 19 19 C 1.37879 * 119.99754 * 180.02562 * 17 15 14 20 20 N 1.31512 * 120.00477 * 0.02562 * 19 17 15 21 21 Si 1.86807 * 119.99706 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47016 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47059 * 120.00163 * 21 19 17 24 24 H 1.48503 * 109.47148 * 239.99568 * 21 19 17 25 25 C 1.46935 * 120.62794 * 184.94361 * 11 9 8 26 26 H 1.08997 * 109.47138 * 300.00114 * 1 2 3 27 27 H 1.09005 * 109.46836 * 59.99912 * 1 2 3 28 28 H 1.09000 * 109.47347 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47036 * 240.00198 * 2 1 3 30 30 H 1.08996 * 109.47036 * 120.00330 * 2 1 3 31 31 H 1.08998 * 109.47074 * 299.99942 * 5 3 2 32 32 H 1.09003 * 109.46992 * 59.99932 * 5 3 2 33 33 H 1.08993 * 109.47447 * 179.97438 * 5 3 2 34 34 H 1.09001 * 109.47372 * 64.99758 * 6 3 2 35 35 H 1.09006 * 109.47142 * 304.99820 * 6 3 2 36 36 H 1.08995 * 109.47136 * 59.99842 * 7 6 3 37 37 H 1.09005 * 109.47118 * 299.99507 * 7 6 3 38 38 H 0.97004 * 120.00174 * 359.97438 * 8 7 6 39 39 H 1.08995 * 109.58741 * 246.15652 * 12 11 9 40 40 H 1.09004 * 109.58229 * 6.57857 * 12 11 9 41 41 H 1.09004 * 109.49752 * 174.59106 * 13 12 11 42 42 H 1.09000 * 109.50280 * 294.68820 * 13 12 11 43 43 H 1.08999 * 109.46318 * 58.64907 * 14 13 12 44 44 H 1.09006 * 109.46066 * 178.61513 * 14 13 12 45 45 H 0.96992 * 120.00439 * 179.97438 * 20 19 17 46 46 H 1.09004 * 109.58406 * 353.41979 * 25 11 9 47 47 H 1.08991 * 109.58243 * 113.84674 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1266 -1.3073 6 6 3.5648 1.4443 0.1257 7 6 4.0645 2.8850 0.2511 8 7 5.5245 2.8866 0.3721 9 6 6.1887 4.0524 0.5007 10 8 5.5878 5.1064 0.4217 11 7 7.5190 4.0496 0.7170 12 6 8.2774 2.7914 0.7015 13 6 9.4422 2.9299 -0.2839 14 6 10.2738 4.1604 0.0852 15 6 9.4037 5.4153 -0.0161 16 1 9.0135 5.5067 -1.0297 17 6 10.2320 6.6298 0.3153 18 1 11.2750 6.5184 0.5722 19 6 9.6582 7.8833 0.2906 20 7 8.3879 8.0190 -0.0217 21 14 10.6849 9.3887 0.7022 22 1 12.0737 8.9692 1.0189 23 1 10.6990 10.3113 -0.4613 24 1 10.0977 10.0823 1.8767 25 6 8.2394 5.3056 0.9668 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.0699 1.5876 -2.1492 32 1 0.5490 2.1253 -1.3969 33 1 1.9982 3.1543 -1.3072 34 1 4.0030 0.9835 -0.7597 35 1 3.8571 0.8800 1.0113 36 1 3.6264 3.3457 1.1365 37 1 3.7723 3.4493 -0.6345 38 1 6.0129 2.0485 0.3640 39 1 8.6653 2.5862 1.6992 40 1 7.6264 1.9762 0.3855 41 1 10.0686 2.0392 -0.2343 42 1 9.0517 3.0446 -1.2950 43 1 10.6434 4.0563 1.1053 44 1 11.1174 4.2473 -0.5996 45 1 7.9842 8.9008 -0.0387 46 1 7.5632 6.1489 0.8257 47 1 8.6240 5.3096 1.9866 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595725890.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:12 Heat of formation + Delta-G solvation = -78.190187 kcal Electronic energy + Delta-G solvation = -22863.815846 eV Core-core repulsion = 19658.591150 eV Total energy + Delta-G solvation = -3205.224696 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.27829 -38.81656 -38.07262 -35.76421 -35.09883 -33.45105 -31.89572 -31.34945 -28.92543 -27.06286 -26.47311 -25.36029 -23.46861 -22.81095 -21.76794 -20.89983 -20.16237 -19.03050 -18.20926 -17.28307 -16.79103 -16.55444 -16.07967 -15.69962 -15.33469 -15.18220 -15.05351 -14.70456 -14.52287 -14.33592 -14.17624 -13.86480 -13.57604 -13.47792 -12.90804 -12.81656 -12.73836 -12.65247 -12.50556 -12.27573 -12.19881 -11.96430 -11.84974 -11.62329 -11.56355 -11.38013 -11.31649 -11.18442 -10.94197 -10.79814 -10.51761 -10.12586 -9.23824 -8.08915 -6.26936 1.39990 1.41338 1.53723 1.82272 2.25399 2.42494 3.07143 3.20660 3.77969 3.95070 4.01551 4.07940 4.16768 4.26533 4.32033 4.40957 4.59478 4.59853 4.61267 4.71292 4.74446 4.77711 4.82568 4.85652 4.90601 5.01708 5.10851 5.12176 5.18565 5.22527 5.26965 5.27795 5.28991 5.31184 5.35126 5.54875 5.57239 5.57626 5.62719 5.67195 5.90862 6.00005 6.19416 6.37336 6.87097 7.16583 7.43212 7.70871 8.94251 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028468 B = 0.003285 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.339323 B = 8520.607843 C = 9259.924901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.114 4.114 3 C -0.087 4.087 4 H 0.068 0.932 5 C -0.154 4.154 6 C -0.112 4.112 7 C 0.136 3.864 8 N -0.734 5.734 9 C 0.690 3.310 10 O -0.643 6.643 11 N -0.628 5.628 12 C 0.110 3.890 13 C -0.126 4.126 14 C -0.105 4.105 15 C 0.037 3.963 16 H -0.018 1.018 17 C -0.534 4.534 18 H 0.063 0.937 19 C 0.007 3.993 20 N -0.915 5.915 21 Si 0.959 3.041 22 H -0.259 1.259 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.142 3.858 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.041 0.959 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.408 0.592 39 H 0.081 0.919 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.047 0.953 43 H 0.059 0.941 44 H 0.051 0.949 45 H 0.259 0.741 46 H 0.074 0.926 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.595 -20.777 0.885 22.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.151 4.151 3 C -0.106 4.106 4 H 0.086 0.914 5 C -0.211 4.211 6 C -0.150 4.150 7 C 0.012 3.988 8 N -0.394 5.394 9 C 0.391 3.609 10 O -0.524 6.524 11 N -0.364 5.364 12 C -0.012 4.012 13 C -0.164 4.164 14 C -0.143 4.143 15 C 0.017 3.983 16 H 0.001 0.999 17 C -0.573 4.573 18 H 0.082 0.918 19 C -0.193 4.193 20 N -0.554 5.554 21 Si 0.784 3.216 22 H -0.183 1.183 23 H -0.209 1.209 24 H -0.209 1.209 25 C 0.019 3.981 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.247 0.753 39 H 0.099 0.901 40 H 0.119 0.881 41 H 0.124 0.876 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.092 0.908 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -10.165 -19.910 0.828 22.370 hybrid contribution 0.514 1.311 0.004 1.408 sum -9.651 -18.599 0.832 20.970 Atomic orbital electron populations 1.21836 0.95688 1.01906 1.01859 1.21528 0.96084 0.94976 1.02557 1.21081 0.93830 0.97321 0.98386 0.91404 1.21970 1.01792 0.99980 0.97397 1.21785 0.96159 0.93283 1.03746 1.21299 0.78001 0.98979 1.00488 1.45134 1.07939 1.06641 1.79661 1.16281 0.82225 0.84379 0.78033 1.90884 1.68568 1.32642 1.60352 1.47688 1.05168 1.09769 1.73773 1.21874 0.93918 0.84715 1.00727 1.21912 0.97093 0.99002 0.98389 1.21507 0.97751 0.94249 1.00754 1.18851 0.92543 0.93678 0.93181 0.99939 1.21552 0.96763 0.91857 1.47103 0.91841 1.25944 0.95922 1.02410 0.94974 1.70123 1.12727 1.23659 1.48891 0.85491 0.79322 0.79182 0.77581 1.18274 1.20920 1.20870 1.21483 0.95093 0.84523 0.97002 0.92981 0.92590 0.92151 0.91455 0.91304 0.92222 0.91738 0.94031 0.90187 0.89723 0.93564 0.93560 0.75268 0.90078 0.88106 0.87576 0.93416 0.92273 0.93012 0.93231 0.90776 0.94696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.67 71.98 0.70 -1.07 16 2 C -0.11 -1.34 5.40 30.59 0.17 -1.17 16 3 C -0.09 -1.32 2.39 -10.79 -0.03 -1.35 16 4 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 5 C -0.15 -2.59 8.70 71.98 0.63 -1.96 16 6 C -0.11 -1.82 4.80 30.59 0.15 -1.67 16 7 C 0.14 3.61 5.44 86.38 0.47 4.08 16 8 N -0.73 -21.86 5.47 -478.53 -2.62 -24.47 16 9 C 0.69 29.76 8.29 179.05 1.49 31.25 16 10 O -0.64 -35.47 15.77 -3.99 -0.06 -35.54 16 11 N -0.63 -26.07 2.98 -837.73 -2.50 -28.56 16 12 C 0.11 3.10 6.39 86.36 0.55 3.65 16 13 C -0.13 -3.71 6.08 30.67 0.19 -3.52 16 14 C -0.10 -4.09 5.11 30.62 0.16 -3.93 16 15 C 0.04 1.91 2.24 -11.61 -0.03 1.89 16 16 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 17 C -0.53 -30.03 8.57 25.60 0.22 -29.81 16 18 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 19 C 0.01 0.39 5.31 84.66 0.45 0.84 16 20 N -0.92 -57.39 11.39 21.45 0.24 -57.14 16 21 Si 0.96 45.17 29.54 68.60 2.03 47.19 16 22 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 23 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 24 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 25 C 0.14 7.35 5.39 86.22 0.46 7.82 16 26 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.65 6.57 -2.38 -0.02 0.63 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 0.96 6.57 -2.39 -0.02 0.94 16 33 H 0.04 0.86 6.57 -2.39 -0.02 0.84 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.05 1.42 6.57 -2.38 -0.02 1.40 16 38 H 0.41 8.83 5.96 -92.71 -0.55 8.28 16 39 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.10 2.02 5.65 -2.38 -0.01 2.01 16 41 H 0.11 2.21 8.14 -2.38 -0.02 2.19 16 42 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 45 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 46 H 0.07 4.63 5.10 -2.38 -0.01 4.62 16 47 H 0.03 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -76.60 359.52 3.04 -73.56 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.38 Total: 19.93 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 5.57 Total: 5.03 kcal Atomic # 7 Polarization: -105.31 SS G_CDS: -4.87 Total: -110.18 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -0.06 Total: -35.54 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -76.60 3.04 -73.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595725890.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.628 kcal (2) G-P(sol) polarization free energy of solvation -76.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds