Wall clock time and date at job start Tue Mar 31 2020 05:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46594 * 2 1 4 4 H 1.09000 * 109.47065 * 55.00378 * 3 2 1 5 5 C 1.53001 * 109.47254 * 294.99492 * 3 2 1 6 6 C 1.53005 * 109.46623 * 174.99658 * 3 2 1 7 7 C 1.53003 * 109.46699 * 184.99756 * 6 3 2 8 8 N 1.46502 * 109.46799 * 179.97438 * 7 6 3 9 9 C 1.34772 * 119.99901 * 179.97438 * 8 7 6 10 10 O 1.21588 * 120.00242 * 4.99336 * 9 8 7 11 11 N 1.34781 * 120.00290 * 184.98536 * 9 8 7 12 12 C 1.46932 * 120.62890 * 354.77433 * 11 9 8 13 13 C 1.53189 * 108.89180 * 233.56317 * 12 11 9 14 14 C 1.53078 * 109.29453 * 305.57472 * 13 12 11 15 15 C 1.53042 * 109.65463 * 61.15799 * 14 13 12 16 16 H 1.08998 * 109.49921 * 58.65509 * 15 14 13 17 17 C 1.50699 * 109.49173 * 178.74692 * 15 14 13 18 18 H 1.08003 * 120.00625 * 359.84130 * 17 15 14 19 19 C 1.37884 * 119.99631 * 179.83624 * 17 15 14 20 20 N 1.31510 * 120.00076 * 0.02562 * 19 17 15 21 21 Si 1.86802 * 119.99717 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47207 * 90.00523 * 21 19 17 23 23 H 1.48500 * 109.46856 * 209.99959 * 21 19 17 24 24 H 1.48496 * 109.47297 * 329.99767 * 21 19 17 25 25 C 1.46917 * 120.63402 * 174.79984 * 11 9 8 26 26 H 1.09004 * 109.46997 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47565 * 300.00373 * 1 2 3 28 28 H 1.09008 * 109.47180 * 60.00407 * 1 2 3 29 29 H 1.09000 * 109.47536 * 240.00473 * 2 1 3 30 30 H 1.08999 * 109.46944 * 119.99474 * 2 1 3 31 31 H 1.08994 * 109.46977 * 180.02562 * 5 3 2 32 32 H 1.08992 * 109.47221 * 300.00256 * 5 3 2 33 33 H 1.09005 * 109.46464 * 60.00513 * 5 3 2 34 34 H 1.09006 * 109.46991 * 65.00447 * 6 3 2 35 35 H 1.08999 * 109.47275 * 305.00221 * 6 3 2 36 36 H 1.08996 * 109.46839 * 60.00527 * 7 6 3 37 37 H 1.08999 * 109.47637 * 300.00243 * 7 6 3 38 38 H 0.97003 * 120.00283 * 0.02562 * 8 7 6 39 39 H 1.09007 * 109.58263 * 353.41987 * 12 11 9 40 40 H 1.08997 * 109.58421 * 113.69837 * 12 11 9 41 41 H 1.08997 * 109.50207 * 65.38913 * 13 12 11 42 42 H 1.09001 * 109.49261 * 185.48278 * 13 12 11 43 43 H 1.09003 * 109.34539 * 301.13385 * 14 13 12 44 44 H 1.08995 * 109.43884 * 181.24029 * 14 13 12 45 45 H 0.96998 * 119.99728 * 179.97438 * 20 19 17 46 46 H 1.08998 * 109.59125 * 246.15685 * 25 11 9 47 47 H 1.09005 * 109.58783 * 6.58406 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8419 5 6 1.6352 2.1266 -1.3074 6 6 3.5648 1.4445 0.1258 7 6 4.0643 2.8852 0.2512 8 7 5.5243 2.8869 0.3722 9 6 6.1889 4.0530 0.4947 10 8 5.5727 5.0963 0.5961 11 7 7.5367 4.0627 0.5050 12 6 8.2944 2.8039 0.4987 13 6 9.2789 2.8117 1.6724 14 6 10.1459 4.0710 1.5970 15 6 9.2585 5.3138 1.6986 16 1 8.7035 5.2889 2.6364 17 6 10.1183 6.5506 1.6549 18 1 11.1909 6.4599 1.5664 19 6 9.5357 7.7981 1.7279 20 7 8.2297 7.9086 1.8361 21 14 10.6014 9.3313 1.6731 22 1 10.7706 9.7664 0.2634 23 1 9.9494 10.4154 2.4508 24 1 11.9314 9.0310 2.2615 25 6 8.2760 5.3322 0.5233 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.9988 3.1541 -1.3075 32 1 2.0699 1.5876 -2.1491 33 1 0.5488 2.1253 -1.3969 34 1 4.0029 0.9837 -0.7596 35 1 3.8570 0.8802 1.0114 36 1 3.6262 3.3459 1.1365 37 1 3.7721 3.4495 -0.6344 38 1 6.0128 2.0489 0.3635 39 1 7.6079 1.9637 0.6032 40 1 8.8436 2.7127 -0.4384 41 1 8.7256 2.8089 2.6115 42 1 9.9133 1.9268 1.6208 43 1 10.6819 4.0841 0.6479 44 1 10.8621 4.0681 2.4186 45 1 7.8199 8.7863 1.8878 46 1 8.8257 5.4484 -0.4107 47 1 7.5775 6.1602 0.6441 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595725891.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:16 Heat of formation + Delta-G solvation = -58.241264 kcal Electronic energy + Delta-G solvation = -22854.482503 eV Core-core repulsion = 19650.122857 eV Total energy + Delta-G solvation = -3204.359646 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.66996 -37.73330 -36.65973 -34.33931 -33.25048 -31.77444 -30.88966 -29.66317 -28.02439 -25.51992 -24.99151 -23.99088 -22.01289 -21.70055 -20.36704 -19.82166 -18.66487 -17.42834 -16.19082 -15.85797 -15.70847 -15.00840 -14.73540 -14.43078 -14.01904 -13.93645 -13.68129 -13.43545 -13.24668 -13.00378 -12.62094 -12.51813 -12.18119 -12.15318 -11.92205 -11.82855 -11.77357 -11.20690 -10.96170 -10.88698 -10.82413 -10.72419 -10.61617 -10.47335 -10.35454 -10.18672 -9.82731 -9.36700 -9.05089 -8.89312 -8.64906 -8.37624 -7.57406 -5.93375 -4.02794 3.28999 3.35527 3.41435 3.43751 3.92307 4.39733 4.48487 4.55837 4.63678 4.74271 5.03091 5.12592 5.27461 5.30271 5.35867 5.36861 5.39443 5.51300 5.53891 5.60012 5.65589 5.74416 5.80319 5.82972 5.90077 5.97532 5.99941 6.06030 6.19411 6.22859 6.26322 6.35207 6.62945 6.71739 6.85278 6.91859 7.03576 7.10190 7.41224 7.57094 7.80302 7.98601 8.12140 8.46072 8.66446 9.00917 9.33698 9.62487 11.11419 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028430 B = 0.003279 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.622033 B = 8537.971783 C = 9288.961630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.089 4.089 4 H 0.074 0.926 5 C -0.153 4.153 6 C -0.126 4.126 7 C 0.138 3.862 8 N -0.759 5.759 9 C 0.699 3.301 10 O -0.583 6.583 11 N -0.624 5.624 12 C 0.116 3.884 13 C -0.133 4.133 14 C -0.110 4.110 15 C 0.039 3.961 16 H 0.028 0.972 17 C -0.521 4.521 18 H 0.058 0.942 19 C 0.062 3.938 20 N -0.878 5.878 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.128 3.872 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.389 0.611 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.049 0.951 44 H 0.050 0.950 45 H 0.263 0.737 46 H 0.038 0.962 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.035 -17.298 -4.694 20.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.108 4.108 4 H 0.092 0.908 5 C -0.210 4.210 6 C -0.164 4.164 7 C 0.014 3.986 8 N -0.418 5.418 9 C 0.400 3.600 10 O -0.460 6.460 11 N -0.360 5.360 12 C -0.008 4.008 13 C -0.172 4.172 14 C -0.147 4.147 15 C 0.020 3.980 16 H 0.046 0.954 17 C -0.560 4.560 18 H 0.076 0.924 19 C -0.141 4.141 20 N -0.515 5.515 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.200 1.200 25 C 0.008 3.992 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.225 0.775 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.057 0.943 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.642 -16.342 -4.623 20.042 hybrid contribution 0.835 0.355 -0.017 0.907 sum -9.807 -15.987 -4.640 19.321 Atomic orbital electron populations 1.21827 0.95949 1.01385 1.02014 1.21569 0.95874 0.96266 1.01915 1.21094 0.94501 0.96270 0.98938 0.90796 1.21965 1.01222 1.01026 0.96829 1.21852 0.95707 0.96464 1.02356 1.21150 0.79503 0.96102 1.01882 1.45359 1.07195 1.07748 1.81540 1.15977 0.82151 0.83655 0.78228 1.90926 1.66845 1.31015 1.57197 1.47777 1.03215 1.08501 1.76544 1.21469 0.94324 0.86221 0.98791 1.21952 0.98029 0.99115 0.98088 1.21619 0.97938 0.94714 1.00456 1.18980 0.92710 0.91604 0.94700 0.95354 1.21073 0.93119 0.90267 1.51555 0.92421 1.25068 0.94963 0.99139 0.94917 1.69906 1.08797 1.23965 1.48839 0.86607 0.80491 0.82958 0.78012 1.20673 1.21240 1.19982 1.22167 0.95705 0.83291 0.98058 0.93009 0.92730 0.92458 0.92052 0.92039 0.92038 0.92752 0.92543 0.91472 0.91448 0.92040 0.91898 0.77529 0.92227 0.92272 0.92239 0.92351 0.93245 0.93104 0.92686 0.94342 0.85913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.67 37.16 0.36 -0.67 16 2 C -0.12 -0.85 5.40 -26.73 -0.14 -1.00 16 3 C -0.09 -0.75 2.39 -90.61 -0.22 -0.97 16 4 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 5 C -0.15 -1.30 8.70 37.16 0.32 -0.98 16 6 C -0.13 -1.17 4.80 -26.73 -0.13 -1.30 16 7 C 0.14 1.85 5.43 -4.04 -0.02 1.83 16 8 N -0.76 -11.77 5.46 -65.22 -0.36 -12.12 16 9 C 0.70 14.83 8.29 -86.92 -0.72 14.11 16 10 O -0.58 -15.21 15.77 5.29 0.08 -15.13 16 11 N -0.62 -12.97 2.97 -178.50 -0.53 -13.50 16 12 C 0.12 1.84 6.38 -3.71 -0.02 1.81 16 13 C -0.13 -2.18 6.09 -26.59 -0.16 -2.34 16 14 C -0.11 -2.21 5.10 -26.67 -0.14 -2.35 16 15 C 0.04 0.99 2.26 -91.65 -0.21 0.79 16 16 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 17 C -0.52 -14.36 8.56 -34.44 -0.29 -14.65 16 18 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 19 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 20 N -0.88 -26.17 11.39 55.43 0.63 -25.54 16 21 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 24 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 25 C 0.13 3.21 5.41 -3.72 -0.02 3.19 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.38 6.57 -51.92 -0.34 0.03 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.60 6.56 -51.93 -0.34 0.25 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.43 6.57 -51.93 -0.34 0.09 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.90 6.56 -51.93 -0.34 0.56 16 38 H 0.39 4.87 5.96 -40.82 -0.24 4.62 16 39 H 0.06 0.74 5.65 -51.92 -0.29 0.45 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 46 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.12 3.60 5.11 -51.93 -0.27 3.34 16 LS Contribution 359.55 15.07 5.42 5.42 Total: -1.00 -32.38 359.55 -9.73 -42.11 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -8.47 Total: 3.10 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -1.49 Total: -0.87 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: -0.26 Total: -51.16 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: 0.08 Total: -15.13 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.38 -9.73 -42.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595725891.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.131 kcal (2) G-P(sol) polarization free energy of solvation -32.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds