Wall clock time and date at job start Tue Mar 31 2020 05:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47394 * 2 1 4 4 H 1.08996 * 109.47683 * 305.00401 * 3 2 1 5 5 C 1.53002 * 109.46797 * 65.00276 * 3 2 1 6 6 C 1.52999 * 109.47187 * 185.00116 * 3 2 1 7 7 C 1.53001 * 109.47266 * 175.00480 * 6 3 2 8 8 N 1.46497 * 109.47291 * 180.02562 * 7 6 3 9 9 C 1.34780 * 120.00109 * 179.97438 * 8 7 6 10 10 O 1.21594 * 120.00079 * 355.01843 * 9 8 7 11 11 N 1.34769 * 120.00351 * 175.01955 * 9 8 7 12 12 C 1.46927 * 120.63593 * 184.99580 * 11 9 8 13 13 C 1.52750 * 109.01015 * 233.58422 * 12 11 9 14 14 C 1.53045 * 109.38497 * 305.58410 * 13 12 11 15 15 C 1.50697 * 109.44880 * 181.25324 * 14 13 12 16 16 H 1.07999 * 119.99894 * 245.35664 * 15 14 13 17 17 C 1.37881 * 119.99986 * 65.36286 * 15 14 13 18 18 N 1.31511 * 120.00104 * 355.12705 * 17 15 14 19 19 Si 1.86805 * 119.99834 * 175.13264 * 17 15 14 20 20 H 1.48498 * 109.47008 * 94.99523 * 19 17 15 21 21 H 1.48501 * 109.46856 * 214.99327 * 19 17 15 22 22 H 1.48496 * 109.47085 * 334.99516 * 19 17 15 23 23 C 1.53036 * 109.53562 * 61.23923 * 14 13 12 24 24 C 1.46928 * 120.62821 * 5.27369 * 11 9 8 25 25 H 1.08997 * 109.47291 * 59.99274 * 1 2 3 26 26 H 1.08996 * 109.47136 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46570 * 299.99849 * 1 2 3 28 28 H 1.09001 * 109.47237 * 240.00266 * 2 1 3 29 29 H 1.08997 * 109.47306 * 120.00169 * 2 1 3 30 30 H 1.08998 * 109.47605 * 299.99750 * 5 3 2 31 31 H 1.09002 * 109.47156 * 60.00295 * 5 3 2 32 32 H 1.09006 * 109.47241 * 179.97438 * 5 3 2 33 33 H 1.09004 * 109.47327 * 294.99866 * 6 3 2 34 34 H 1.08995 * 109.47168 * 55.00112 * 6 3 2 35 35 H 1.09004 * 109.46891 * 300.00218 * 7 6 3 36 36 H 1.08995 * 109.47328 * 59.99729 * 7 6 3 37 37 H 0.96995 * 119.99894 * 359.97438 * 8 7 6 38 38 H 1.09004 * 109.57749 * 353.41909 * 12 11 9 39 39 H 1.08997 * 109.58577 * 113.83891 * 12 11 9 40 40 H 1.09005 * 109.56591 * 185.54750 * 13 12 11 41 41 H 1.09003 * 109.36282 * 65.49738 * 13 12 11 42 42 H 1.08995 * 109.45783 * 301.22257 * 14 13 12 43 43 H 0.96991 * 120.00213 * 180.02562 * 18 17 15 44 44 H 1.09000 * 109.49985 * 178.68126 * 23 14 13 45 45 H 1.09008 * 109.52557 * 58.60614 * 23 14 13 46 46 H 1.09002 * 109.58674 * 246.16050 * 24 11 9 47 47 H 1.08999 * 109.58820 * 6.44014 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6353 2.1264 1.3074 6 6 3.5648 1.4442 -0.1257 7 6 4.0646 2.8849 -0.2510 8 7 5.5246 2.8865 -0.3721 9 6 6.1892 4.0525 -0.4955 10 8 5.5730 5.0958 -0.5976 11 7 7.5368 4.0622 -0.5059 12 6 8.2763 5.3317 -0.5297 13 6 9.2587 5.3133 -1.6993 14 6 10.1461 4.0705 -1.5978 15 6 11.1363 4.0669 -2.7337 16 1 11.0884 3.2968 -3.4894 17 6 12.1035 5.0468 -2.8083 18 7 12.1034 6.0379 -1.9440 19 14 13.4138 4.9665 -4.1373 20 1 12.9924 5.7909 -5.2983 21 1 14.6964 5.4874 -3.5999 22 1 13.5942 3.5575 -4.5701 23 6 9.2769 2.8133 -1.6751 24 6 8.2945 2.8034 -0.4996 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 0.5490 2.1252 1.3971 31 1 2.0700 1.5873 2.1492 32 1 1.9991 3.1540 1.3077 33 1 4.0030 0.9835 0.7596 34 1 3.8570 0.8800 -1.0113 35 1 3.6264 3.3457 -1.1364 36 1 3.7724 3.4491 0.6345 37 1 6.0129 2.0485 -0.3633 38 1 7.5776 6.1590 -0.6541 39 1 8.8259 5.4520 0.4038 40 1 9.8806 6.2080 -1.6677 41 1 8.7037 5.2885 -2.6371 42 1 10.6821 4.0836 -0.6488 43 1 12.7836 6.7274 -1.9966 44 1 9.9116 1.9286 -1.6263 45 1 8.7216 2.8114 -2.6132 46 1 8.8457 2.7133 0.4364 47 1 7.6079 1.9631 -0.6016 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595727146.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:00 Heat of formation + Delta-G solvation = -60.523846 kcal Electronic energy + Delta-G solvation = -22593.697511 eV Core-core repulsion = 19389.238885 eV Total energy + Delta-G solvation = -3204.458626 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.93241 -37.83174 -36.78480 -34.55197 -33.46244 -31.45874 -30.85093 -29.99195 -28.09948 -26.19159 -25.18142 -23.03687 -22.47096 -21.77203 -20.47695 -19.94134 -18.76507 -17.59815 -16.34410 -16.02495 -15.85375 -15.16930 -14.87494 -14.56786 -14.14265 -14.06269 -13.66567 -13.51602 -13.20016 -12.96584 -12.74382 -12.55476 -12.26536 -12.24400 -11.96508 -11.93950 -11.71399 -11.31865 -11.09142 -10.95117 -10.93716 -10.79982 -10.70507 -10.64816 -10.40950 -10.05280 -9.72082 -9.52863 -9.15886 -8.92546 -8.85447 -8.36093 -7.85163 -6.01107 -4.06740 3.05698 3.29405 3.36905 3.39782 3.61048 4.21465 4.42544 4.45431 4.56033 4.65276 4.95865 5.03168 5.19930 5.27843 5.28314 5.29317 5.38710 5.43624 5.51583 5.67686 5.71275 5.76430 5.78020 5.79855 5.85868 5.86246 5.95332 6.08456 6.14020 6.16716 6.28895 6.45375 6.52400 6.63188 6.72127 6.84297 7.00453 7.17499 7.26600 7.52930 7.72078 7.94517 8.05728 8.35570 8.42034 8.96927 8.99743 9.58053 11.05186 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039236 B = 0.002819 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.457472 B = 9931.436715 C =10334.422276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.088 4.088 4 H 0.073 0.927 5 C -0.153 4.153 6 C -0.127 4.127 7 C 0.138 3.862 8 N -0.754 5.754 9 C 0.704 3.296 10 O -0.602 6.602 11 N -0.619 5.619 12 C 0.126 3.874 13 C -0.122 4.122 14 C 0.049 3.951 15 C -0.514 4.514 16 H 0.054 0.946 17 C 0.062 3.938 18 N -0.889 5.889 19 Si 0.890 3.110 20 H -0.282 1.282 21 H -0.286 1.286 22 H -0.275 1.275 23 C -0.124 4.124 24 C 0.114 3.886 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.394 0.606 38 H 0.076 0.924 39 H 0.056 0.944 40 H 0.098 0.902 41 H 0.038 0.962 42 H 0.029 0.971 43 H 0.260 0.740 44 H 0.060 0.940 45 H 0.051 0.949 46 H 0.062 0.938 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.847 -11.385 6.113 22.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.108 4.108 4 H 0.092 0.908 5 C -0.210 4.210 6 C -0.165 4.165 7 C 0.014 3.986 8 N -0.413 5.413 9 C 0.405 3.595 10 O -0.481 6.481 11 N -0.355 5.355 12 C 0.004 3.996 13 C -0.160 4.160 14 C 0.031 3.969 15 C -0.552 4.552 16 H 0.072 0.928 17 C -0.140 4.140 18 N -0.528 5.528 19 Si 0.718 3.282 20 H -0.208 1.208 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.162 4.162 24 C -0.010 4.010 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.230 0.770 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.117 0.883 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.184 -10.440 6.112 21.840 hybrid contribution 1.066 -0.459 -0.775 1.396 sum -17.117 -10.900 5.337 20.983 Atomic orbital electron populations 1.21825 0.95913 1.01458 1.01973 1.21569 0.95902 0.96185 1.02026 1.21085 0.94393 0.96385 0.98891 0.90823 1.21969 1.01290 1.00896 0.96888 1.21861 0.95788 0.96278 1.02596 1.21185 0.79168 0.96424 1.01867 1.45307 1.07389 1.07789 1.80790 1.15879 0.81907 0.83774 0.77903 1.90860 1.67208 1.31356 1.58694 1.47441 1.03162 1.08483 1.76441 1.21665 0.94130 0.83681 1.00094 1.21937 0.95876 1.03899 0.94308 1.18633 0.91931 0.88733 0.97626 1.21173 1.13093 1.11187 1.09746 0.92777 1.24972 0.97734 0.95296 0.95979 1.69875 1.34596 1.11884 1.36426 0.86619 0.81442 0.78186 0.81977 1.20834 1.21211 1.19955 1.22015 0.97040 1.01324 0.95826 1.21704 0.94372 0.84590 1.00302 0.92752 0.92948 0.92464 0.91972 0.91988 0.92495 0.92690 0.92157 0.91322 0.91284 0.91984 0.91803 0.76992 0.90572 0.92594 0.88338 0.94350 0.95254 0.92978 0.92123 0.92977 0.91969 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.67 37.16 0.36 -0.58 16 2 C -0.12 -0.78 5.40 -26.73 -0.14 -0.92 16 3 C -0.09 -0.66 2.39 -90.62 -0.22 -0.87 16 4 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 5 C -0.15 -1.13 8.70 37.16 0.32 -0.81 16 6 C -0.13 -1.06 4.80 -26.73 -0.13 -1.19 16 7 C 0.14 1.62 5.43 -4.04 -0.02 1.60 16 8 N -0.75 -10.50 5.47 -65.23 -0.36 -10.86 16 9 C 0.70 13.09 8.30 -86.92 -0.72 12.37 16 10 O -0.60 -13.32 15.77 5.28 0.08 -13.24 16 11 N -0.62 -11.53 2.98 -178.76 -0.53 -12.06 16 12 C 0.13 2.61 6.41 -3.94 -0.03 2.58 16 13 C -0.12 -2.86 5.18 -26.84 -0.14 -3.00 16 14 C 0.05 1.18 2.01 -91.73 -0.18 0.99 16 15 C -0.51 -13.75 8.49 -34.44 -0.29 -14.05 16 16 H 0.05 1.44 7.75 -52.49 -0.41 1.03 16 17 C 0.06 1.68 5.36 -17.82 -0.10 1.58 16 18 N -0.89 -24.94 11.53 55.43 0.64 -24.30 16 19 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 C -0.12 -2.40 5.30 -26.61 -0.14 -2.54 16 24 C 0.11 1.84 6.39 -3.71 -0.02 1.82 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.34 6.57 -51.92 -0.34 0.00 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.38 6.57 -51.93 -0.34 0.04 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.50 6.56 -51.93 -0.34 0.16 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.79 6.56 -51.93 -0.34 0.45 16 37 H 0.39 4.57 5.96 -40.82 -0.24 4.33 16 38 H 0.08 1.62 6.99 -51.93 -0.36 1.26 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.10 2.57 6.30 -51.93 -0.33 2.24 16 41 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.05 1.05 8.14 -51.92 -0.42 0.62 16 46 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.06 0.75 5.64 -51.93 -0.29 0.46 16 LS Contribution 359.78 15.07 5.42 5.42 Total: -1.00 -30.47 359.78 -9.69 -40.17 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -8.47 Total: 1.87 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -1.45 Total: -3.02 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: -0.25 Total: -47.22 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.08 Total: -13.24 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.47 -9.69 -40.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595727146.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.359 kcal (2) G-P(sol) polarization free energy of solvation -30.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds