Wall clock time and date at job start Tue Mar 31 2020 05:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46912 * 2 1 4 4 H 1.09001 * 109.46988 * 55.00171 * 3 2 1 5 5 C 1.53004 * 109.47059 * 295.00168 * 3 2 1 6 6 C 1.52995 * 109.47291 * 175.00497 * 3 2 1 7 7 C 1.52991 * 109.47450 * 185.00059 * 6 3 2 8 8 N 1.46502 * 109.47471 * 179.97438 * 7 6 3 9 9 C 1.34776 * 120.00181 * 179.97438 * 8 7 6 10 10 O 1.21594 * 119.99957 * 355.01584 * 9 8 7 11 11 N 1.34774 * 120.00021 * 175.01681 * 9 8 7 12 12 C 1.46930 * 120.62994 * 184.94593 * 11 9 8 13 13 C 1.52766 * 109.00928 * 233.58356 * 12 11 9 14 14 C 1.53036 * 109.37990 * 305.59203 * 13 12 11 15 15 C 1.50706 * 109.44708 * 181.25272 * 14 13 12 16 16 H 1.07997 * 120.00073 * 239.93789 * 15 14 13 17 17 C 1.37880 * 119.99959 * 59.93501 * 15 14 13 18 18 N 1.31512 * 120.00098 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99931 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46959 * 60.00321 * 19 17 15 21 21 H 1.48500 * 109.47125 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47181 * 300.00056 * 19 17 15 23 23 C 1.53038 * 109.54426 * 61.23876 * 14 13 12 24 24 C 1.46923 * 120.63183 * 5.22589 * 11 9 8 25 25 H 1.09004 * 109.46750 * 299.99363 * 1 2 3 26 26 H 1.08995 * 109.47137 * 59.99936 * 1 2 3 27 27 H 1.09003 * 109.46865 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46750 * 240.00637 * 2 1 3 29 29 H 1.08994 * 109.47880 * 120.00039 * 2 1 3 30 30 H 1.09006 * 109.47225 * 59.99979 * 5 3 2 31 31 H 1.08997 * 109.46924 * 179.97438 * 5 3 2 32 32 H 1.09000 * 109.47606 * 300.00233 * 5 3 2 33 33 H 1.09009 * 109.46843 * 305.00175 * 6 3 2 34 34 H 1.09004 * 109.47431 * 64.99228 * 6 3 2 35 35 H 1.08995 * 109.47282 * 299.99872 * 7 6 3 36 36 H 1.09009 * 109.47217 * 59.99881 * 7 6 3 37 37 H 0.96996 * 119.99848 * 359.97438 * 8 7 6 38 38 H 1.09000 * 109.58519 * 353.41790 * 12 11 9 39 39 H 1.08999 * 109.58654 * 113.84321 * 12 11 9 40 40 H 1.08992 * 109.56290 * 185.55290 * 13 12 11 41 41 H 1.09001 * 109.35594 * 65.50075 * 13 12 11 42 42 H 1.09000 * 109.46188 * 301.21336 * 14 13 12 43 43 H 0.97000 * 120.00787 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.49801 * 178.68388 * 23 14 13 45 45 H 1.09003 * 109.51909 * 58.59978 * 23 14 13 46 46 H 1.09000 * 109.59076 * 246.15403 * 24 11 9 47 47 H 1.08998 * 109.58636 * 6.43711 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6351 2.1266 -1.3074 6 6 3.5648 1.4445 0.1256 7 6 4.0644 2.8851 0.2510 8 7 5.5244 2.8869 0.3719 9 6 6.1890 4.0530 0.4944 10 8 5.5878 5.1068 0.4137 11 7 7.5200 4.0509 0.7063 12 6 8.2412 5.3077 0.9495 13 6 9.4023 5.4142 -0.0376 14 6 10.2726 4.1596 0.0650 15 6 11.4358 4.2767 -0.8862 16 1 11.5677 3.5459 -1.6704 17 6 12.3314 5.3168 -0.7552 18 7 12.1710 6.2064 0.2000 19 14 13.7726 5.4623 -1.9346 20 1 13.2641 5.5994 -3.3231 21 1 14.5807 6.6577 -1.5836 22 1 14.6185 4.2458 -1.8351 23 6 9.4399 2.9278 -0.2973 24 6 8.2784 2.7926 0.6924 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8935 -0.5138 0.8899 30 1 0.5488 2.1253 -1.3969 31 1 1.9980 3.1544 -1.3071 32 1 2.0697 1.5876 -2.1492 33 1 3.8571 0.8801 1.0112 34 1 4.0029 0.9837 -0.7598 35 1 3.7721 3.4494 -0.6345 36 1 3.6263 3.3458 1.1365 37 1 6.0127 2.0489 0.3637 38 1 7.5647 6.1505 0.8079 39 1 8.6293 5.3151 1.9680 40 1 10.0020 6.2933 0.1979 41 1 9.0087 5.5022 -1.0502 42 1 10.6458 4.0587 1.0841 43 1 12.8012 6.9379 0.2924 44 1 10.0664 2.0373 -0.2467 45 1 9.0460 3.0387 -1.3076 46 1 8.6696 2.5907 1.6895 47 1 7.6257 1.9761 0.3837 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595727147.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:03 Heat of formation + Delta-G solvation = -59.834974 kcal Electronic energy + Delta-G solvation = -22617.419843 eV Core-core repulsion = 19412.991088 eV Total energy + Delta-G solvation = -3204.428754 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.92765 -37.82740 -36.78436 -34.54832 -33.47863 -31.44622 -30.85044 -29.97001 -28.08770 -26.19200 -25.17818 -23.03436 -22.46613 -21.76749 -20.47244 -19.94105 -18.75751 -17.60637 -16.33236 -16.01506 -15.82553 -15.24789 -14.72616 -14.57764 -14.32894 -13.89478 -13.65500 -13.61531 -13.11802 -12.98038 -12.69950 -12.62271 -12.27187 -12.20326 -11.95729 -11.93932 -11.71956 -11.30291 -11.10112 -10.94410 -10.89664 -10.80089 -10.70068 -10.66563 -10.41006 -10.03630 -9.71768 -9.53545 -9.16406 -8.92007 -8.84993 -8.34647 -7.85052 -5.99951 -4.06797 3.06174 3.31070 3.36273 3.38455 3.61521 4.21883 4.42478 4.45708 4.56370 4.65574 4.95940 5.03384 5.20892 5.28177 5.28931 5.29662 5.39120 5.43683 5.52541 5.67950 5.71842 5.76517 5.78178 5.80302 5.86083 5.86868 5.95494 6.08868 6.14472 6.18104 6.30054 6.45370 6.53053 6.64140 6.72497 6.84879 7.00794 7.18437 7.27659 7.52973 7.73132 7.95552 8.08518 8.36137 8.42288 8.96158 9.00207 9.58027 11.05390 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037424 B = 0.002835 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.995025 B = 9874.854035 C =10137.851308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.088 4.088 4 H 0.073 0.927 5 C -0.154 4.154 6 C -0.127 4.127 7 C 0.138 3.862 8 N -0.754 5.754 9 C 0.704 3.296 10 O -0.602 6.602 11 N -0.619 5.619 12 C 0.127 3.873 13 C -0.124 4.124 14 C 0.050 3.950 15 C -0.514 4.514 16 H 0.053 0.947 17 C 0.061 3.939 18 N -0.890 5.890 19 Si 0.891 3.109 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.278 1.278 23 C -0.124 4.124 24 C 0.114 3.886 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.394 0.606 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.104 0.896 41 H 0.037 0.963 42 H 0.027 0.973 43 H 0.261 0.739 44 H 0.060 0.940 45 H 0.052 0.948 46 H 0.062 0.938 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.324 -11.845 1.260 21.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.107 4.107 4 H 0.091 0.909 5 C -0.211 4.211 6 C -0.165 4.165 7 C 0.014 3.986 8 N -0.413 5.413 9 C 0.405 3.595 10 O -0.481 6.481 11 N -0.355 5.355 12 C 0.005 3.995 13 C -0.162 4.162 14 C 0.031 3.969 15 C -0.552 4.552 16 H 0.072 0.928 17 C -0.140 4.140 18 N -0.529 5.529 19 Si 0.719 3.281 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.162 4.162 24 C -0.010 4.010 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.230 0.770 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.122 0.878 41 H 0.056 0.944 42 H 0.045 0.955 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.672 -10.888 1.301 21.654 hybrid contribution 1.134 -0.358 -0.681 1.370 sum -17.538 -11.246 0.620 20.843 Atomic orbital electron populations 1.21826 0.95916 1.01451 1.01972 1.21572 0.95898 0.96193 1.02020 1.21084 0.94376 0.96364 0.98889 0.90876 1.21973 1.01275 1.00961 0.96893 1.21862 0.95803 0.96268 1.02599 1.21184 0.79118 0.96444 1.01900 1.45309 1.07366 1.07794 1.80814 1.15882 0.81819 0.83847 0.77922 1.90860 1.67642 1.30351 1.59267 1.47453 1.04815 1.09216 1.74050 1.21672 0.94340 0.84057 0.99477 1.21946 0.94217 1.03944 0.96139 1.18618 0.92119 0.88985 0.97158 1.21148 1.08911 1.10384 1.14774 0.92830 1.24965 0.97791 0.95776 0.95450 1.69832 1.36814 1.14297 1.31935 0.86677 0.82539 0.77409 0.81468 1.20363 1.21310 1.20347 1.22010 0.95504 1.01181 0.97504 1.21698 0.94113 0.84664 1.00483 0.92780 0.92437 0.92954 0.91957 0.92010 0.92508 0.92105 0.92637 0.91354 0.91256 0.91626 0.92161 0.76998 0.90576 0.92622 0.87843 0.94402 0.95489 0.92892 0.92185 0.92933 0.91981 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.67 37.16 0.36 -0.57 16 2 C -0.12 -0.78 5.40 -26.73 -0.14 -0.93 16 3 C -0.09 -0.66 2.39 -90.62 -0.22 -0.87 16 4 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 5 C -0.15 -1.19 8.70 37.16 0.32 -0.86 16 6 C -0.13 -1.06 4.80 -26.74 -0.13 -1.19 16 7 C 0.14 1.63 5.43 -4.05 -0.02 1.61 16 8 N -0.75 -10.54 5.47 -65.23 -0.36 -10.89 16 9 C 0.70 13.13 8.30 -86.92 -0.72 12.41 16 10 O -0.60 -13.35 15.77 5.28 0.08 -13.27 16 11 N -0.62 -11.57 2.98 -178.76 -0.53 -12.10 16 12 C 0.13 2.62 6.41 -3.93 -0.03 2.60 16 13 C -0.12 -2.92 5.14 -26.83 -0.14 -3.06 16 14 C 0.05 1.19 2.07 -91.73 -0.19 1.00 16 15 C -0.51 -13.77 8.56 -34.44 -0.29 -14.06 16 16 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 17 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 18 N -0.89 -24.93 11.31 55.43 0.63 -24.30 16 19 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 C -0.12 -2.41 5.30 -26.61 -0.14 -2.55 16 24 C 0.11 1.85 6.39 -3.71 -0.02 1.82 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.34 6.56 -51.93 -0.34 0.00 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.39 6.57 -51.93 -0.34 0.05 16 31 H 0.06 0.53 6.57 -51.93 -0.34 0.19 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.85 6.57 -51.93 -0.34 0.51 16 36 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 37 H 0.39 4.59 5.96 -40.82 -0.24 4.34 16 38 H 0.08 1.63 6.99 -51.93 -0.36 1.26 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.10 2.71 6.03 -51.93 -0.31 2.39 16 41 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.06 0.75 5.64 -51.93 -0.29 0.46 16 LS Contribution 359.31 15.07 5.41 5.41 Total: -1.00 -30.42 359.31 -9.70 -40.12 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -8.46 Total: 2.07 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -1.46 Total: -3.09 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: -0.26 Total: -47.30 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.08 Total: -13.27 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.42 -9.70 -40.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595727147.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.714 kcal (2) G-P(sol) polarization free energy of solvation -30.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds