Wall clock time and date at job start Tue Mar 31 2020 06:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 N 1.46899 * 109.47254 * 179.97438 * 3 2 1 5 5 C 1.47449 * 110.99925 * 69.87450 * 4 3 2 6 6 C 1.54311 * 107.23220 * 123.25698 * 5 4 3 7 7 C 1.55140 * 103.02352 * 22.28584 * 6 5 4 8 8 H 1.08997 * 110.99296 * 82.46783 * 7 6 5 9 9 N 1.46499 * 110.99132 * 206.25861 * 7 6 5 10 10 C 1.34780 * 119.99487 * 273.54021 * 9 7 6 11 11 O 1.21282 * 120.00110 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99989 * 180.02562 * 10 9 7 13 13 C 1.52992 * 109.47304 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47393 * 179.97438 * 13 12 10 15 15 C 1.52992 * 109.47393 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47304 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99592 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00255 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99973 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00077 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47559 * 89.99852 * 20 18 16 22 22 H 1.48505 * 109.47202 * 210.00001 * 20 18 16 23 23 H 1.48506 * 109.47246 * 329.99421 * 20 18 16 24 24 C 1.47840 * 111.00178 * 190.71465 * 4 3 2 25 25 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 28 28 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 29 29 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 30 30 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 31 31 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 32 32 H 1.08997 * 109.88742 * 242.66510 * 5 4 3 33 33 H 1.09000 * 109.88557 * 3.85348 * 5 4 3 34 34 H 1.09003 * 110.70864 * 140.66988 * 6 5 4 35 35 H 1.09003 * 110.70775 * 263.72575 * 6 5 4 36 36 H 0.96993 * 120.00600 * 93.54453 * 9 7 6 37 37 H 1.09007 * 109.47110 * 300.00100 * 12 10 9 38 38 H 1.09005 * 109.47145 * 59.99882 * 12 10 9 39 39 H 1.08997 * 109.47093 * 299.99841 * 13 12 10 40 40 H 1.09005 * 109.47155 * 59.99840 * 13 12 10 41 41 H 1.09009 * 109.46605 * 300.00293 * 14 13 12 42 42 H 1.09003 * 109.46724 * 59.99433 * 14 13 12 43 43 H 1.08997 * 109.47093 * 299.99844 * 15 14 13 44 44 H 1.09005 * 109.47155 * 59.99843 * 15 14 13 45 45 H 0.96999 * 120.00113 * 179.97438 * 19 18 16 46 46 H 1.09005 * 110.37490 * 332.47029 * 24 4 3 47 47 H 1.09002 * 110.37399 * 94.80649 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4424 0.0006 5 6 4.0379 0.9685 -1.2916 6 6 4.9566 2.0784 -1.8442 7 6 5.3451 2.8765 -0.5718 8 1 6.1707 2.3963 -0.0466 9 7 5.6741 4.2650 -0.9033 10 6 6.9277 4.5895 -1.2773 11 8 7.7830 3.7320 -1.3398 12 6 7.2665 6.0180 -1.6177 13 6 8.7428 6.1130 -2.0076 14 6 9.0866 7.5631 -2.3539 15 6 10.5631 7.6582 -2.7432 16 6 10.9019 9.0866 -3.0836 17 1 10.1401 9.8502 -3.0283 18 6 12.1841 9.4186 -3.4667 19 7 13.1117 8.4887 -3.5346 20 14 12.6041 11.1893 -3.8880 21 1 13.0535 11.8967 -2.6621 22 1 13.6911 11.2130 -4.8997 23 1 11.4018 11.8660 -4.4375 24 6 4.0388 2.7985 0.2572 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 4.6101 0.0525 -1.1446 33 1 3.2163 0.7879 -1.9847 34 1 5.8410 1.6483 -2.3143 35 1 4.4163 2.7106 -2.5489 36 1 4.9900 4.9508 -0.8535 37 1 6.6485 6.3489 -2.4525 38 1 7.0774 6.6525 -0.7518 39 1 9.3610 5.7820 -1.1731 40 1 8.9315 5.4785 -2.8737 41 1 8.4683 7.8937 -3.1886 42 1 8.8978 8.1979 -1.4881 43 1 11.1810 7.3278 -1.9082 44 1 10.7523 7.0233 -3.6088 45 1 14.0136 8.7222 -3.8045 46 1 3.3290 3.5535 -0.0810 47 1 4.2543 2.9273 1.3180 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598342759.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:49 Heat of formation + Delta-G solvation = -68.579359 kcal Electronic energy + Delta-G solvation = -21490.085791 eV Core-core repulsion = 18285.277852 eV Total energy + Delta-G solvation = -3204.807939 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.23569 -38.90372 -35.52716 -34.81230 -33.59559 -32.59321 -30.68009 -29.79623 -28.64398 -25.99713 -25.22684 -22.69455 -22.35662 -21.35113 -20.70958 -20.12301 -19.94476 -17.09138 -16.87307 -16.27194 -16.11307 -15.64160 -15.31635 -14.74895 -14.43166 -14.41920 -14.15174 -13.77105 -13.58285 -13.17648 -13.02298 -12.60948 -12.41754 -12.26309 -12.04521 -11.76320 -11.73964 -11.65904 -11.55537 -11.30488 -11.13347 -10.98942 -10.96737 -10.52583 -10.49293 -10.39674 -9.82216 -9.59923 -9.21192 -9.19920 -8.96993 -8.77007 -8.29224 -5.93976 -3.96534 2.71093 2.93673 3.34784 3.40761 3.43893 3.65043 4.16683 4.29513 4.49904 4.54983 4.63242 4.75858 4.80898 4.91757 4.93370 5.00316 5.06343 5.18991 5.26867 5.31902 5.33493 5.37880 5.41460 5.47755 5.56348 5.59911 5.73193 5.75634 5.82321 5.85157 5.92214 6.15238 6.28423 6.32618 6.51680 6.56764 6.62288 6.85493 7.03559 7.21464 7.41499 7.75494 7.91652 8.07489 8.26051 8.49257 9.11175 9.67037 11.17305 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.064227 B = 0.001992 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.847007 B =14053.500474 C =14248.767337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C 0.050 3.950 4 N -0.527 5.527 5 C 0.042 3.958 6 C -0.155 4.155 7 C 0.138 3.862 8 H 0.103 0.897 9 N -0.732 5.732 10 C 0.514 3.486 11 O -0.532 6.532 12 C -0.138 4.138 13 C -0.103 4.103 14 C -0.110 4.110 15 C 0.019 3.981 16 C -0.521 4.521 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.038 3.962 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.035 0.965 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.399 0.601 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.260 0.740 46 H 0.051 0.949 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.553 -14.970 7.438 31.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.078 4.078 4 N -0.251 5.251 5 C -0.085 4.085 6 C -0.194 4.194 7 C 0.032 3.968 8 H 0.121 0.879 9 N -0.385 5.385 10 C 0.301 3.699 11 O -0.407 6.407 12 C -0.178 4.178 13 C -0.141 4.141 14 C -0.148 4.148 15 C -0.018 4.018 16 C -0.559 4.559 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.534 5.534 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.090 4.090 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.053 0.947 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.233 0.767 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -25.574 -15.960 7.744 31.124 hybrid contribution -0.376 1.843 -0.906 2.088 sum -25.950 -14.117 6.838 30.322 Atomic orbital electron populations 1.21743 0.95597 1.01873 1.01764 1.21513 0.95320 0.96169 1.02840 1.22356 0.87097 0.97524 1.00828 1.63586 1.07828 1.22177 1.31545 1.22845 0.97838 0.98578 0.89283 1.23192 1.00448 0.97686 0.98106 1.21986 0.97340 0.82634 0.94853 0.87944 1.46024 1.12127 1.09365 1.70978 1.21125 0.81265 0.91882 0.75588 1.90711 1.47463 1.51276 1.51254 1.21798 1.00992 0.91969 1.03076 1.21452 0.91668 0.99057 1.01958 1.21652 1.00592 0.92900 0.99651 1.19100 0.89312 0.96674 0.96697 1.21289 0.95150 0.94223 1.45245 0.92763 1.25042 0.96599 0.97154 0.95775 1.69977 1.02603 1.32570 1.48275 0.86609 0.78032 0.85281 0.78140 1.20712 1.21260 1.19951 1.23221 0.94830 0.89993 1.01005 0.92456 0.92638 0.92895 0.91991 0.91051 0.90787 0.94653 0.90067 0.92347 0.89917 0.91210 0.76694 0.89200 0.89107 0.91774 0.91829 0.93510 0.93480 0.96567 0.96580 0.93058 0.93033 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.15 0.37 -0.35 16 2 C -0.12 -0.70 5.96 -26.74 -0.16 -0.86 16 3 C 0.05 0.32 4.54 -3.83 -0.02 0.30 16 4 N -0.53 -4.13 5.16 -231.25 -1.19 -5.32 16 5 C 0.04 0.33 6.21 -2.84 -0.02 0.31 16 6 C -0.15 -1.41 6.64 -24.91 -0.17 -1.58 16 7 C 0.14 1.32 3.31 -65.79 -0.22 1.11 16 8 H 0.10 1.22 7.73 -51.93 -0.40 0.82 16 9 N -0.73 -7.15 5.23 -51.74 -0.27 -7.42 16 10 C 0.51 7.04 7.83 -10.98 -0.09 6.96 16 11 O -0.53 -9.63 15.73 5.56 0.09 -9.54 16 12 C -0.14 -1.82 5.70 -27.89 -0.16 -1.98 16 13 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 14 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 15 C 0.02 0.51 4.97 -27.89 -0.14 0.38 16 16 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 17 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -27.64 13.29 55.43 0.74 -26.91 16 20 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.04 0.28 6.30 -2.30 -0.01 0.27 16 25 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.37 7.14 -51.93 -0.37 0.00 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 31 H 0.04 0.22 7.96 -51.93 -0.41 -0.19 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.41 6.91 -51.93 -0.36 0.05 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.40 2.72 8.51 -40.82 -0.35 2.37 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 40 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 41 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 46 H 0.05 0.33 7.67 -51.93 -0.40 -0.07 16 47 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 376.09 15.07 5.67 5.67 Total: -1.00 -33.41 376.09 -10.28 -43.69 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -9.01 Total: -3.40 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -1.28 Total: -13.75 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: -0.73 Total: -39.64 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.41 -10.28 -43.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598342759.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.893 kcal (2) G-P(sol) polarization free energy of solvation -33.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds