Wall clock time and date at job start Tue Mar 31 2020 06:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47187 * 2 1 4 4 N 1.46901 * 109.47321 * 174.72954 * 3 2 1 5 5 C 1.47900 * 111.00212 * 174.71813 * 4 3 2 6 6 C 1.53987 * 107.22465 * 214.25128 * 5 4 3 7 7 C 1.54589 * 105.14285 * 1.12525 * 6 5 4 8 8 H 1.08998 * 110.72639 * 263.60124 * 7 6 5 9 9 N 1.46498 * 110.72649 * 140.31284 * 7 6 5 10 10 C 1.34777 * 119.99921 * 86.45613 * 9 7 6 11 11 O 1.21284 * 119.99781 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00182 * 179.97438 * 10 9 7 13 13 C 1.52998 * 109.47056 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47101 * 180.02562 * 13 12 10 15 15 C 1.53004 * 109.47088 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.46809 * 180.02562 * 15 14 13 17 17 H 1.08005 * 120.00328 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99667 * 179.97438 * 16 15 14 19 19 N 1.31506 * 120.00203 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99826 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46969 * 89.99796 * 20 18 16 22 22 H 1.48498 * 109.47392 * 210.00046 * 20 18 16 23 23 H 1.48505 * 109.47099 * 330.00169 * 20 18 16 24 24 C 1.48808 * 111.18720 * 57.37660 * 4 3 2 25 25 H 1.09000 * 109.47497 * 300.00336 * 1 2 3 26 26 H 1.09003 * 109.47151 * 60.00610 * 1 2 3 27 27 H 1.09003 * 109.47576 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47184 * 239.99282 * 2 1 3 29 29 H 1.09008 * 109.46682 * 119.99485 * 2 1 3 30 30 H 1.08996 * 109.47251 * 54.72324 * 3 2 1 31 31 H 1.09001 * 109.46956 * 294.72195 * 3 2 1 32 32 H 1.09006 * 109.91520 * 94.79682 * 5 4 3 33 33 H 1.09005 * 109.91222 * 333.70421 * 5 4 3 34 34 H 1.09006 * 110.31185 * 120.04052 * 6 5 4 35 35 H 1.08998 * 110.30901 * 242.10643 * 6 5 4 36 36 H 0.96999 * 120.00366 * 266.45120 * 9 7 6 37 37 H 1.09000 * 109.46950 * 299.99602 * 12 10 9 38 38 H 1.09002 * 109.47134 * 60.00066 * 12 10 9 39 39 H 1.09004 * 109.47468 * 300.00223 * 13 12 10 40 40 H 1.08998 * 109.47485 * 60.00167 * 13 12 10 41 41 H 1.09000 * 109.46696 * 299.99561 * 14 13 12 42 42 H 1.08998 * 109.47047 * 59.99614 * 14 13 12 43 43 H 1.09000 * 109.46746 * 299.99227 * 15 14 13 44 44 H 1.08994 * 109.47076 * 59.99457 * 15 14 13 45 45 H 0.97004 * 120.00070 * 179.97438 * 19 18 16 46 46 H 1.09000 * 110.51946 * 41.07351 * 24 4 3 47 47 H 1.09004 * 110.84190 * 278.09475 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5034 1.4445 0.1272 5 6 4.0443 2.8155 0.0045 6 6 5.4090 2.7059 -0.7003 7 6 5.5924 1.1991 -0.9932 8 1 6.1929 0.7255 -0.2166 9 7 6.1960 0.9972 -2.3127 10 6 7.5367 1.0115 -2.4498 11 8 8.2434 1.1912 -1.4807 12 6 8.1577 0.8032 -3.8071 13 6 9.6815 0.8662 -3.6858 14 6 10.3120 0.6553 -5.0639 15 6 11.8359 0.7177 -4.9425 16 6 12.4568 0.5106 -6.2999 17 1 11.8274 0.3501 -7.1629 18 6 13.8283 0.5261 -6.4402 19 7 14.5946 0.7221 -5.3896 20 14 14.5980 0.2687 -8.1227 21 1 14.7629 1.5811 -8.7976 22 1 15.9257 -0.3777 -7.9661 23 1 13.7171 -0.6020 -8.9421 24 6 4.1395 0.6618 -0.9669 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 1.6015 1.9829 0.8389 31 1 1.7558 1.9283 -0.9335 32 1 4.1716 3.2545 0.9941 33 1 3.3677 3.4297 -0.5898 34 1 5.4011 3.2739 -1.6307 35 1 6.2029 3.0649 -0.0455 36 1 5.6308 0.8530 -3.0877 37 1 7.8638 -0.1720 -4.1952 38 1 7.8151 1.5832 -4.4870 39 1 9.9751 1.8416 -3.2977 40 1 10.0245 0.0865 -3.0058 41 1 10.0184 -0.3199 -5.4522 42 1 9.9689 1.4353 -5.7435 43 1 12.1297 1.6928 -4.5540 44 1 12.1785 -0.0625 -4.2629 45 1 15.5596 0.7326 -5.4883 46 1 3.6400 0.8563 -1.9161 47 1 4.1275 -0.4041 -0.7389 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598342761.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:52 Heat of formation + Delta-G solvation = -67.946945 kcal Electronic energy + Delta-G solvation = -21549.547285 eV Core-core repulsion = 18344.766770 eV Total energy + Delta-G solvation = -3204.780516 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.21721 -38.87132 -35.52118 -34.80662 -33.67615 -32.59359 -30.62312 -29.73014 -28.68789 -25.96153 -25.30699 -22.83705 -22.16385 -21.27251 -20.76261 -20.11140 -19.93191 -17.02036 -16.85105 -16.38144 -16.12828 -15.62061 -15.32384 -14.86413 -14.48006 -14.39681 -13.98422 -13.65873 -13.56199 -13.29096 -13.03492 -12.59473 -12.41873 -12.32652 -11.96980 -11.87078 -11.67660 -11.62989 -11.54131 -11.32790 -11.11865 -10.97224 -10.93336 -10.52081 -10.48918 -10.39130 -9.80619 -9.59457 -9.20758 -9.18476 -8.96696 -8.87952 -8.28995 -5.93677 -3.96176 2.72702 2.96413 3.34927 3.40914 3.44102 3.64798 4.16264 4.31535 4.50144 4.54944 4.59878 4.76085 4.81627 4.86004 4.93737 5.02754 5.07300 5.19883 5.27656 5.29024 5.34366 5.38595 5.41777 5.47969 5.56592 5.58280 5.69124 5.77723 5.81103 5.84005 5.92051 6.15950 6.25098 6.32620 6.48189 6.56945 6.58337 6.86167 7.04253 7.21969 7.43122 7.75886 7.92140 8.07849 8.27708 8.49613 9.11529 9.67328 11.17595 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.047361 B = 0.002070 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.065068 B =13520.392041 C =13843.455578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C 0.047 3.953 4 N -0.515 5.515 5 C 0.037 3.963 6 C -0.143 4.143 7 C 0.142 3.858 8 H 0.102 0.898 9 N -0.733 5.733 10 C 0.513 3.487 11 O -0.532 6.532 12 C -0.139 4.139 13 C -0.103 4.103 14 C -0.110 4.110 15 C 0.019 3.981 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.031 3.969 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.035 0.965 32 H 0.082 0.918 33 H 0.046 0.954 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.399 0.601 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.260 0.740 46 H 0.050 0.950 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.660 1.209 9.793 31.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.081 4.081 4 N -0.239 5.239 5 C -0.091 4.091 6 C -0.183 4.183 7 C 0.037 3.963 8 H 0.120 0.880 9 N -0.386 5.386 10 C 0.301 3.699 11 O -0.407 6.407 12 C -0.178 4.178 13 C -0.141 4.141 14 C -0.148 4.148 15 C -0.018 4.018 16 C -0.559 4.559 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.534 5.534 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.098 4.098 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.053 0.947 32 H 0.100 0.900 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.233 0.767 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -28.835 1.132 11.076 30.910 hybrid contribution -0.082 0.246 -2.088 2.104 sum -28.918 1.378 8.988 30.313 Atomic orbital electron populations 1.21735 0.95444 1.01933 1.01802 1.21570 0.95746 0.96131 1.02801 1.22366 0.87494 0.97608 1.00604 1.64814 1.05513 1.10335 1.43284 1.22861 0.95200 0.90074 1.00960 1.22839 0.97149 0.97042 1.01223 1.21750 0.93210 0.95151 0.86230 0.88020 1.46092 1.07286 1.75317 1.09940 1.21119 0.81453 0.75242 0.92087 1.90712 1.61223 1.47691 1.41055 1.21798 0.99058 1.03705 0.93288 1.21452 0.90374 1.02867 0.99442 1.21651 0.99476 0.99901 0.93766 1.19101 0.88503 0.97314 0.96866 1.21288 0.91465 1.48829 0.94295 0.92767 1.25044 0.97506 0.95500 0.96545 1.69974 1.04333 1.50163 1.28947 0.86611 0.78653 0.78232 0.84575 1.20731 1.21254 1.19946 1.23471 0.93271 0.99529 0.93510 0.92581 0.92861 0.92415 0.92001 0.90889 0.90431 0.94700 0.89990 0.93610 0.90978 0.90136 0.76736 0.89129 0.89211 0.91825 0.91776 0.93489 0.93514 0.96589 0.96558 0.93057 0.93213 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.91 37.15 0.37 -0.34 16 2 C -0.12 -0.71 5.59 -26.74 -0.15 -0.86 16 3 C 0.05 0.30 4.88 -3.82 -0.02 0.28 16 4 N -0.52 -4.07 5.37 -230.21 -1.24 -5.31 16 5 C 0.04 0.29 6.69 -2.76 -0.02 0.27 16 6 C -0.14 -1.32 6.67 -25.38 -0.17 -1.49 16 7 C 0.14 1.38 3.34 -66.07 -0.22 1.16 16 8 H 0.10 1.23 7.70 -51.93 -0.40 0.83 16 9 N -0.73 -7.18 5.14 -52.01 -0.27 -7.45 16 10 C 0.51 7.05 7.83 -10.98 -0.09 6.97 16 11 O -0.53 -9.65 15.71 5.55 0.09 -9.57 16 12 C -0.14 -1.82 5.70 -27.88 -0.16 -1.98 16 13 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 14 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 15 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 16 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 17 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 18 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -27.66 13.29 55.43 0.74 -26.92 16 20 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 24 C 0.03 0.23 4.95 -1.74 -0.01 0.22 16 25 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.35 7.19 -51.93 -0.37 -0.02 16 29 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.03 0.22 7.95 -51.93 -0.41 -0.20 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.32 7.65 -51.93 -0.40 -0.08 16 34 H 0.07 0.66 8.05 -51.93 -0.42 0.24 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.40 2.73 8.53 -40.82 -0.35 2.38 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 40 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 46 H 0.05 0.32 7.89 -51.93 -0.41 -0.09 16 47 H 0.09 0.66 7.80 -51.93 -0.40 0.25 16 LS Contribution 375.97 15.07 5.67 5.67 Total: -1.00 -33.46 375.97 -10.35 -43.81 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -9.04 Total: -3.51 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -1.27 Total: -13.71 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: -0.77 Total: -39.68 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.46 -10.35 -43.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598342761.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.141 kcal (2) G-P(sol) polarization free energy of solvation -33.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds