Wall clock time and date at job start Tue Mar 31 2020 05:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47113 * 2 1 4 4 H 1.09005 * 109.48943 * 55.03613 * 3 2 1 5 5 C 1.53095 * 109.48157 * 175.06161 * 3 2 1 6 6 C 1.53180 * 109.16467 * 177.59586 * 5 3 2 7 7 H 1.08994 * 109.54207 * 62.88129 * 6 5 3 8 8 N 1.46902 * 109.54253 * 183.15189 * 6 5 3 9 9 C 1.46952 * 110.99869 * 303.35541 * 8 6 5 10 10 C 1.53056 * 109.36421 * 176.81201 * 9 8 6 11 11 N 1.46963 * 109.36118 * 58.39896 * 10 9 8 12 12 C 1.46902 * 110.99687 * 176.81276 * 11 10 9 13 13 C 1.50700 * 109.47183 * 58.97752 * 12 11 10 14 14 H 1.08004 * 119.99728 * 5.00678 * 13 12 11 15 15 C 1.37873 * 119.99996 * 185.00946 * 13 12 11 16 16 N 1.31515 * 120.00298 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00108 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47186 * 89.99698 * 17 15 13 19 19 H 1.48497 * 109.47345 * 209.99891 * 17 15 13 20 20 H 1.48507 * 109.47254 * 330.00512 * 17 15 13 21 21 C 1.46956 * 110.87887 * 300.67978 * 11 10 9 22 22 C 1.46950 * 110.99898 * 179.55480 * 8 6 5 23 23 C 1.53176 * 109.03443 * 303.01647 * 6 5 3 24 24 C 1.53101 * 109.16197 * 56.98069 * 23 6 5 25 25 O 1.42898 * 109.41425 * 302.38818 * 24 23 6 26 26 H 1.09001 * 109.47406 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47084 * 299.99323 * 1 2 3 28 28 H 1.09002 * 109.47387 * 59.99660 * 1 2 3 29 29 H 1.09001 * 109.46577 * 240.00676 * 2 1 3 30 30 H 1.08991 * 109.47630 * 120.00821 * 2 1 3 31 31 H 1.08999 * 109.52026 * 297.50227 * 5 3 2 32 32 H 1.09003 * 109.52252 * 57.61981 * 5 3 2 33 33 H 1.08998 * 109.49036 * 296.77578 * 9 8 6 34 34 H 1.09001 * 109.49429 * 56.84503 * 9 8 6 35 35 H 1.08994 * 109.49034 * 298.43093 * 10 9 8 36 36 H 1.09003 * 109.48867 * 178.36758 * 10 9 8 37 37 H 1.08993 * 109.47002 * 178.97628 * 12 11 10 38 38 H 1.08998 * 109.46971 * 298.98164 * 12 11 10 39 39 H 0.97002 * 120.00145 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.49000 * 299.35216 * 21 11 10 41 41 H 1.08999 * 109.50091 * 179.29902 * 21 11 10 42 42 H 1.09003 * 109.49036 * 303.15428 * 22 8 6 43 43 H 1.08994 * 109.49028 * 63.19834 * 22 8 6 44 44 H 1.09000 * 109.52371 * 297.08175 * 23 6 5 45 45 H 1.08997 * 109.52383 * 176.88698 * 23 6 5 46 46 H 1.08997 * 109.47688 * 62.37351 * 24 23 6 47 47 H 1.09004 * 109.47724 * 182.39096 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6060 1.9816 0.8421 5 6 3.5659 1.4445 0.1242 6 6 4.0734 2.8885 0.0631 7 1 3.6800 3.4494 0.9107 8 7 5.5418 2.8955 0.1057 9 6 6.0371 2.2049 1.3046 10 6 7.5667 2.1645 1.2715 11 7 8.0890 3.5365 1.2038 12 6 9.5574 3.5435 1.2465 13 6 10.0973 2.7415 0.0905 14 1 9.4220 2.3414 -0.6514 15 6 11.4534 2.5185 -0.0201 16 7 12.2758 3.0051 0.8835 17 14 12.1227 1.5238 -1.4526 18 1 12.4315 2.4331 -2.5853 19 1 13.3605 0.8200 -1.0312 20 1 11.1079 0.5274 -1.8804 21 6 7.5937 4.2270 0.0049 22 6 6.0641 4.2673 0.0381 23 6 3.5957 3.5311 -1.2427 24 6 2.0686 3.4484 -1.3142 25 8 1.6620 2.0817 -1.2210 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8932 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8898 31 1 3.8544 0.9970 1.0753 32 1 3.9988 0.8702 -0.6948 33 1 5.7067 2.7398 2.1950 34 1 5.6468 1.1874 1.3256 35 1 7.8969 1.6061 0.3956 36 1 7.9373 1.6783 2.1739 37 1 9.9180 4.5696 1.1766 38 1 9.8957 3.1024 2.1841 39 1 13.2299 2.8485 0.8055 40 1 7.9241 3.6920 -0.8855 41 1 7.9839 5.2445 -0.0164 42 1 5.6935 4.7535 -0.8644 43 1 5.7337 4.8258 0.9138 44 1 4.0292 2.9998 -2.0901 45 1 3.9056 4.5757 -1.2694 46 1 1.6350 4.0138 -0.4893 47 1 1.7259 3.8661 -2.2609 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601315511.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:02 Heat of formation + Delta-G solvation = -48.134285 kcal Electronic energy + Delta-G solvation = -23471.678009 eV Core-core repulsion = 20267.756635 eV Total energy + Delta-G solvation = -3203.921374 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.05327 -38.32253 -35.52639 -34.17770 -32.75015 -31.44227 -30.74829 -29.62814 -27.55674 -25.33699 -24.33067 -23.76649 -22.24305 -21.72152 -21.15273 -20.03857 -19.09720 -16.59488 -16.57473 -16.35785 -15.32092 -14.95287 -14.82814 -14.65384 -14.23510 -14.16350 -13.91021 -13.75033 -13.38483 -13.23117 -13.00961 -12.73003 -12.22179 -11.99487 -11.88496 -11.62713 -11.37064 -11.25664 -11.10004 -11.04565 -10.92899 -10.84608 -10.56740 -10.42672 -10.34896 -10.24876 -9.91746 -9.81588 -9.62846 -9.47521 -8.42007 -8.05767 -7.15606 -6.01315 -4.10249 3.28762 3.35541 3.39482 3.61633 3.99880 4.42322 4.48616 4.74547 4.80180 4.93957 4.98632 5.02587 5.11309 5.14875 5.24781 5.29027 5.35403 5.38804 5.50902 5.57095 5.62641 5.64763 5.70517 5.75371 5.86017 5.86362 5.92569 5.97095 5.98467 6.07563 6.12351 6.15482 6.29215 6.33932 6.63109 6.78871 6.89357 7.11198 7.22719 7.35262 7.42105 7.53624 7.91494 8.07060 8.30001 8.31528 9.00585 9.56682 11.03725 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025992 B = 0.003592 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.002339 B = 7792.502413 C = 8036.278302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C 0.093 3.907 4 H 0.054 0.946 5 C -0.144 4.144 6 C 0.086 3.914 7 H 0.035 0.965 8 N -0.530 5.530 9 C 0.057 3.943 10 C 0.066 3.934 11 N -0.544 5.544 12 C 0.187 3.813 13 C -0.548 4.548 14 H 0.059 0.941 15 C 0.064 3.936 16 N -0.892 5.892 17 Si 0.889 3.111 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.064 3.936 22 C 0.058 3.942 23 C -0.150 4.150 24 C 0.065 3.935 25 O -0.378 6.378 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.032 0.968 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.067 0.933 37 H 0.026 0.974 38 H 0.034 0.966 39 H 0.262 0.738 40 H 0.047 0.953 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.032 0.968 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.046 0.954 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.763 -1.538 -1.319 21.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C 0.035 3.965 4 H 0.072 0.928 5 C -0.182 4.182 6 C -0.023 4.023 7 H 0.053 0.947 8 N -0.255 5.255 9 C -0.071 4.071 10 C -0.063 4.063 11 N -0.269 5.269 12 C 0.062 3.938 13 C -0.587 4.587 14 H 0.077 0.923 15 C -0.138 4.138 16 N -0.531 5.531 17 Si 0.717 3.283 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.065 4.065 22 C -0.070 4.070 23 C -0.188 4.188 24 C -0.012 4.012 25 O -0.298 6.298 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.050 0.950 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.044 0.956 38 H 0.052 0.948 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.050 0.950 44 H 0.100 0.900 45 H 0.092 0.908 46 H 0.064 0.936 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -21.653 -1.619 -1.391 21.758 hybrid contribution 0.854 -0.314 -0.555 1.066 sum -20.799 -1.933 -1.946 20.979 Atomic orbital electron populations 1.21717 0.95391 1.01403 1.02135 1.21538 0.96496 0.94417 1.02892 1.22139 0.93525 0.93935 0.86914 0.92795 1.22342 0.95310 0.97048 1.03515 1.21581 0.88632 0.95674 0.96410 0.94667 1.62178 1.06272 1.17122 1.39953 1.22285 0.96781 0.97954 0.90119 1.21908 0.91201 0.91773 1.01419 1.62694 1.12672 1.14768 1.36740 1.19727 0.80369 0.96965 0.96790 1.21772 0.92452 1.34170 1.10266 0.92301 1.24965 0.97096 0.95694 0.96064 1.69947 1.03320 1.45372 1.34490 0.86642 0.78505 0.80390 0.82782 1.20659 1.21182 1.19896 1.21922 0.91601 0.99048 0.93926 1.22255 0.96500 0.88467 0.99800 1.22302 0.95955 1.01689 0.98822 1.22541 0.93809 0.83071 1.01778 1.87902 1.78524 1.24667 1.38663 0.92860 0.93084 0.91979 0.90976 0.90640 0.90794 0.89998 0.95013 0.91053 0.93228 0.91441 0.95556 0.94811 0.92851 0.93490 0.91498 0.91126 0.94977 0.90022 0.90805 0.93596 0.88833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.81 37.16 0.36 -0.83 16 2 C -0.12 -1.03 5.64 -26.73 -0.15 -1.18 16 3 C 0.09 0.95 2.64 -26.68 -0.07 0.88 16 4 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 5 C -0.14 -1.65 4.25 -26.59 -0.11 -1.76 16 6 C 0.09 1.08 2.02 -67.53 -0.14 0.94 16 7 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 8 N -0.53 -8.20 4.58 -226.28 -1.04 -9.24 16 9 C 0.06 0.91 5.24 -3.77 -0.02 0.89 16 10 C 0.07 1.32 5.24 -3.76 -0.02 1.30 16 11 N -0.54 -11.88 4.92 -235.91 -1.16 -13.04 16 12 C 0.19 4.87 5.14 -4.97 -0.03 4.84 16 13 C -0.55 -15.17 7.66 -34.44 -0.26 -15.43 16 14 H 0.06 1.64 5.82 -52.48 -0.31 1.33 16 15 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 16 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 17 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 C 0.06 1.26 5.32 -3.77 -0.02 1.24 16 22 C 0.06 0.92 5.32 -3.77 -0.02 0.90 16 23 C -0.15 -1.68 5.09 -26.59 -0.14 -1.82 16 24 C 0.07 0.64 6.84 37.21 0.25 0.89 16 25 O -0.38 -4.31 9.94 -35.23 -0.35 -4.66 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.55 7.82 -51.93 -0.41 0.14 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.81 6.49 -51.93 -0.34 0.47 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 1.02 6.15 -51.93 -0.32 0.70 16 35 H 0.05 1.11 6.61 -51.93 -0.34 0.76 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.03 0.73 8.12 -51.93 -0.42 0.31 16 38 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.05 1.03 6.78 -51.93 -0.35 0.68 16 41 H 0.07 1.30 8.12 -51.93 -0.42 0.88 16 42 H 0.07 1.00 6.22 -51.93 -0.32 0.67 16 43 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.07 0.78 6.53 -51.93 -0.34 0.44 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 350.21 15.07 5.28 5.28 Total: -1.00 -29.51 350.21 -10.63 -40.14 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -8.62 Total: -2.02 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -0.45 Total: -7.42 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -1.46 Total: -47.95 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.35 Total: -4.66 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.51 -10.63 -40.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601315511.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.990 kcal (2) G-P(sol) polarization free energy of solvation -29.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds