Wall clock time and date at job start Tue Mar 31 2020 05:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.47126 * 2 1 4 4 H 1.08997 * 109.48469 * 54.97402 * 3 2 1 5 5 C 1.53092 * 109.47895 * 174.99903 * 3 2 1 6 6 C 1.53174 * 109.16374 * 62.38457 * 5 3 2 7 7 H 1.09000 * 109.54478 * 297.02259 * 6 5 3 8 8 N 1.46903 * 109.54392 * 176.84699 * 6 5 3 9 9 C 1.46961 * 110.99732 * 175.17707 * 8 6 5 10 10 C 1.53051 * 109.36140 * 183.18710 * 9 8 6 11 11 N 1.46957 * 109.36655 * 301.60123 * 10 9 8 12 12 C 1.46903 * 111.00078 * 183.18817 * 11 10 9 13 13 C 1.50694 * 109.47066 * 169.99798 * 12 11 10 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.46952 * 110.88354 * 59.31938 * 11 10 9 22 22 C 1.46956 * 111.00102 * 298.97434 * 8 6 5 23 23 C 1.53177 * 109.11166 * 56.93691 * 6 5 3 24 24 C 1.53106 * 109.15749 * 303.15239 * 23 6 5 25 25 O 1.42904 * 109.49041 * 294.94598 * 3 2 1 26 26 H 1.08999 * 109.46768 * 59.99695 * 1 2 3 27 27 H 1.08996 * 109.47133 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47183 * 300.00478 * 1 2 3 29 29 H 1.09003 * 109.47183 * 239.99522 * 2 1 3 30 30 H 1.09006 * 109.46605 * 119.99941 * 2 1 3 31 31 H 1.08995 * 109.52342 * 302.47451 * 5 3 2 32 32 H 1.09000 * 109.57501 * 182.32027 * 5 3 2 33 33 H 1.09001 * 109.48899 * 63.22352 * 9 8 6 34 34 H 1.09000 * 109.50838 * 303.16355 * 9 8 6 35 35 H 1.09000 * 109.49065 * 181.62603 * 10 9 8 36 36 H 1.09007 * 109.48975 * 61.56742 * 10 9 8 37 37 H 1.09007 * 109.47052 * 49.99482 * 12 11 10 38 38 H 1.09003 * 109.46808 * 290.00175 * 12 11 10 39 39 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 40 40 H 1.09001 * 109.48698 * 60.64605 * 21 11 10 41 41 H 1.08995 * 109.49098 * 180.71626 * 21 11 10 42 42 H 1.09007 * 109.48999 * 296.78209 * 22 8 6 43 43 H 1.09005 * 109.48477 * 56.82317 * 22 8 6 44 44 H 1.09000 * 109.52439 * 62.96909 * 23 6 5 45 45 H 1.09003 * 109.52699 * 183.16096 * 23 6 5 46 46 H 1.09005 * 109.40641 * 297.49723 * 24 23 6 47 47 H 1.08990 * 109.49360 * 177.50587 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6052 1.9818 0.8415 5 6 3.5658 1.4445 0.1258 6 6 4.1715 0.7375 -1.0905 7 1 3.8518 -0.3045 -1.1034 8 7 5.6373 0.8008 -1.0161 9 6 6.2536 0.0335 -2.1076 10 6 7.7757 0.0584 -1.9490 11 7 8.2438 1.4514 -1.9585 12 6 9.7096 1.5147 -1.8841 13 6 10.1651 2.9278 -2.1419 14 1 9.4386 3.7015 -2.3415 15 6 11.5097 3.2328 -2.1240 16 7 12.3946 2.2906 -1.8815 17 14 12.0743 4.9844 -2.4443 18 1 13.5561 5.0484 -2.3690 19 1 11.6281 5.4091 -3.7955 20 1 11.4878 5.8882 -1.4225 21 6 7.6276 2.2186 -0.8671 22 6 6.1055 2.1937 -1.0257 23 6 3.6927 1.4362 -2.3667 24 6 2.1619 1.4364 -2.3953 25 8 1.6633 2.0813 -1.2215 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8901 31 1 3.8570 0.9188 1.0351 32 1 3.9274 2.4719 0.1674 33 1 5.9804 0.4786 -3.0644 34 1 5.9011 -0.9973 -2.0721 35 1 8.2362 -0.4857 -2.7735 36 1 8.0506 -0.4112 -1.0044 37 1 10.1405 0.8514 -2.6342 38 1 10.0369 1.2026 -0.8923 39 1 13.3405 2.5051 -1.8693 40 1 7.9008 1.7736 0.0897 41 1 7.9801 3.2494 -0.9030 42 1 5.8306 2.6633 -1.9703 43 1 5.6447 2.7379 -0.2013 44 1 4.0560 2.4638 -2.3777 45 1 4.0744 0.9046 -3.2384 46 1 1.8001 0.4086 -2.4267 47 1 1.8146 1.9713 -3.2791 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601315515.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:05 Heat of formation + Delta-G solvation = -42.675483 kcal Electronic energy + Delta-G solvation = -23596.185799 eV Core-core repulsion = 20392.501136 eV Total energy + Delta-G solvation = -3203.684663 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.47282 -38.40114 -35.50535 -33.67879 -32.75291 -31.31298 -30.68113 -30.12640 -27.70077 -25.39696 -24.07138 -23.68588 -23.11071 -22.14124 -21.25637 -19.60084 -18.50052 -16.98431 -16.31937 -16.23096 -15.59281 -15.16591 -14.78263 -14.44347 -14.36930 -14.19734 -13.97331 -13.72881 -13.66221 -13.26860 -12.97068 -12.69898 -12.36218 -12.02251 -11.99962 -11.74402 -11.54580 -11.22503 -11.19259 -11.10698 -10.93286 -10.84944 -10.69601 -10.57393 -10.38750 -10.25053 -10.05946 -9.67551 -9.55881 -9.17801 -8.42667 -8.04977 -7.21001 -6.01777 -4.03256 3.33914 3.37810 3.40802 3.69410 4.03626 4.42977 4.46976 4.68359 4.74428 4.77273 4.93594 4.96729 4.98330 5.16035 5.21486 5.28440 5.33719 5.41976 5.49051 5.50666 5.55081 5.58815 5.66639 5.73546 5.75329 5.83462 5.86087 5.90741 5.98024 6.01396 6.03271 6.14147 6.16691 6.31335 6.45267 6.62774 6.71229 7.08841 7.20995 7.27408 7.36819 7.40149 7.80875 8.10514 8.22525 8.56727 9.04064 9.60870 11.09104 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035476 B = 0.003398 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.068369 B = 8237.428059 C = 8529.657509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.158 4.158 3 C 0.092 3.908 4 H 0.101 0.899 5 C -0.143 4.143 6 C 0.086 3.914 7 H 0.079 0.921 8 N -0.531 5.531 9 C 0.060 3.940 10 C 0.057 3.943 11 N -0.538 5.538 12 C 0.194 3.806 13 C -0.508 4.508 14 H 0.062 0.938 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.898 3.102 18 H -0.288 1.288 19 H -0.276 1.276 20 H -0.277 1.277 21 C 0.068 3.932 22 C 0.053 3.947 23 C -0.191 4.191 24 C 0.063 3.937 25 O -0.375 6.375 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.041 0.959 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.029 0.971 37 H 0.029 0.971 38 H -0.009 1.009 39 H 0.262 0.738 40 H 0.027 0.973 41 H 0.085 0.915 42 H 0.042 0.958 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.051 0.949 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.952 -5.008 2.700 22.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.196 4.196 3 C 0.034 3.966 4 H 0.119 0.881 5 C -0.181 4.181 6 C -0.023 4.023 7 H 0.098 0.902 8 N -0.255 5.255 9 C -0.068 4.068 10 C -0.072 4.072 11 N -0.264 5.264 12 C 0.069 3.931 13 C -0.546 4.546 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.539 5.539 17 Si 0.726 3.274 18 H -0.214 1.214 19 H -0.202 1.202 20 H -0.203 1.203 21 C -0.061 4.061 22 C -0.075 4.075 23 C -0.230 4.230 24 C -0.014 4.014 25 O -0.294 6.294 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.048 0.952 37 H 0.047 0.953 38 H 0.009 0.991 39 H 0.071 0.929 40 H 0.046 0.954 41 H 0.103 0.897 42 H 0.060 0.940 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.069 0.931 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.826 -4.882 2.717 22.530 hybrid contribution 0.742 0.584 -0.214 0.968 sum -21.084 -4.298 2.503 21.663 Atomic orbital electron populations 1.21706 0.95315 1.01300 1.02228 1.22201 0.96794 0.97547 1.03033 1.22240 0.93772 0.93097 0.87531 0.88097 1.22292 0.94771 1.02130 0.98904 1.21725 0.88111 0.99137 0.93313 0.90245 1.62411 1.04626 1.13085 1.45333 1.22159 0.95187 0.97056 0.92438 1.22058 0.93146 0.91990 1.00053 1.62280 1.11037 1.08884 1.44150 1.19689 0.79996 0.97788 0.95612 1.21119 0.91621 0.94217 1.47675 0.92003 1.24992 0.96714 0.97423 0.95475 1.69953 1.01538 1.32576 1.49785 0.86563 0.77326 0.84666 0.78867 1.21358 1.20190 1.20261 1.21989 0.91333 1.00115 0.92657 1.22334 0.96450 0.88428 1.00299 1.22908 0.96955 1.03099 1.00087 1.22502 0.92977 0.97737 0.88231 1.87974 1.74545 1.53235 1.13656 0.92283 0.92984 0.92768 0.91228 0.90868 0.90207 0.90612 0.94092 0.91450 0.91120 0.95229 0.95294 0.99113 0.92877 0.95444 0.89678 0.93995 0.91006 0.90401 0.90766 0.93054 0.89225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.81 37.16 0.36 -0.74 16 2 C -0.16 -1.28 4.74 -26.73 -0.13 -1.41 16 3 C 0.09 0.87 3.29 -26.69 -0.09 0.78 16 4 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 5 C -0.14 -1.52 4.81 -26.59 -0.13 -1.65 16 6 C 0.09 1.00 2.01 -67.53 -0.14 0.86 16 7 H 0.08 0.88 6.71 -51.93 -0.35 0.53 16 8 N -0.53 -7.75 4.70 -226.26 -1.06 -8.81 16 9 C 0.06 0.90 5.26 -3.76 -0.02 0.88 16 10 C 0.06 1.05 5.61 -3.77 -0.02 1.03 16 11 N -0.54 -11.83 4.70 -235.91 -1.11 -12.94 16 12 C 0.19 5.14 4.72 -4.98 -0.02 5.12 16 13 C -0.51 -14.37 8.47 -34.44 -0.29 -14.67 16 14 H 0.06 1.73 7.13 -52.49 -0.37 1.35 16 15 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 17 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C 0.07 1.35 5.43 -3.77 -0.02 1.33 16 22 C 0.05 0.84 4.82 -3.77 -0.02 0.82 16 23 C -0.19 -2.15 4.72 -26.58 -0.13 -2.27 16 24 C 0.06 0.62 6.51 37.21 0.24 0.86 16 25 O -0.38 -4.17 10.14 -35.23 -0.36 -4.53 16 26 H 0.06 0.48 7.82 -51.93 -0.41 0.07 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.58 4.98 -51.93 -0.26 0.33 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.89 6.21 -51.93 -0.32 0.56 16 33 H 0.04 0.63 6.68 -51.93 -0.35 0.28 16 34 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 35 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.03 0.82 8.03 -51.92 -0.42 0.40 16 38 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 1.82 6.79 -51.93 -0.35 1.47 16 42 H 0.04 0.70 6.40 -51.93 -0.33 0.37 16 43 H 0.07 1.05 6.11 -51.93 -0.32 0.73 16 44 H 0.08 1.00 6.30 -51.93 -0.33 0.68 16 45 H 0.07 0.84 6.77 -51.93 -0.35 0.49 16 46 H 0.05 0.45 6.23 -51.93 -0.32 0.13 16 47 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 343.28 15.07 5.17 5.17 Total: -1.00 -30.01 343.28 -10.39 -40.40 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -8.26 Total: -2.26 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -0.49 Total: -7.57 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: -1.44 Total: -47.96 kcal Atomic # 8 Polarization: -4.17 SS G_CDS: -0.36 Total: -4.53 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.01 -10.39 -40.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601315515.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.279 kcal (2) G-P(sol) polarization free energy of solvation -30.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds