Wall clock time and date at job start Tue Mar 31 2020 05:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47466 * 2 1 4 4 H 1.08999 * 109.47679 * 305.02102 * 3 2 1 5 5 C 1.53093 * 109.48040 * 185.00055 * 3 2 1 6 6 C 1.53182 * 109.16029 * 297.62257 * 5 3 2 7 7 H 1.08996 * 109.54279 * 62.88813 * 6 5 3 8 8 N 1.46895 * 109.53996 * 183.15759 * 6 5 3 9 9 C 1.46962 * 111.00028 * 303.79478 * 8 6 5 10 10 C 1.53046 * 109.36678 * 176.81281 * 9 8 6 11 11 N 1.46961 * 109.36456 * 58.40297 * 10 9 8 12 12 C 1.46894 * 110.99976 * 176.81003 * 11 10 9 13 13 C 1.50704 * 109.47325 * 58.98428 * 12 11 10 14 14 H 1.08000 * 119.99605 * 5.00146 * 13 12 11 15 15 C 1.37875 * 120.00111 * 185.00689 * 13 12 11 16 16 N 1.31518 * 119.99909 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99769 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46949 * 90.00300 * 17 15 13 19 19 H 1.48499 * 109.47202 * 209.99913 * 17 15 13 20 20 H 1.48500 * 109.47514 * 329.99860 * 17 15 13 21 21 C 1.46954 * 110.87832 * 300.68297 * 11 10 9 22 22 C 1.46959 * 111.00034 * 180.02562 * 8 6 5 23 23 C 1.53181 * 109.03383 * 303.02121 * 6 5 3 24 24 C 1.53086 * 109.16331 * 56.98504 * 23 6 5 25 25 O 1.42903 * 109.48063 * 65.05185 * 3 2 1 26 26 H 1.08996 * 109.47677 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47314 * 300.00571 * 1 2 3 28 28 H 1.09001 * 109.46854 * 60.00012 * 1 2 3 29 29 H 1.09006 * 109.47314 * 239.99429 * 2 1 3 30 30 H 1.09001 * 109.46854 * 119.99988 * 2 1 3 31 31 H 1.08993 * 109.52368 * 57.53137 * 5 3 2 32 32 H 1.09002 * 109.52073 * 177.72241 * 5 3 2 33 33 H 1.08998 * 109.48986 * 296.78566 * 9 8 6 34 34 H 1.09004 * 109.48640 * 56.85033 * 9 8 6 35 35 H 1.09008 * 109.49008 * 298.43970 * 10 9 8 36 36 H 1.08993 * 109.50871 * 178.38104 * 10 9 8 37 37 H 1.09001 * 109.46853 * 178.97847 * 12 11 10 38 38 H 1.09000 * 109.47448 * 298.97932 * 12 11 10 39 39 H 0.97003 * 119.99838 * 179.97438 * 16 15 13 40 40 H 1.09006 * 109.49083 * 299.34596 * 21 11 10 41 41 H 1.09000 * 109.50383 * 179.29735 * 21 11 10 42 42 H 1.09001 * 109.48650 * 303.15075 * 22 8 6 43 43 H 1.08997 * 109.49237 * 63.19420 * 22 8 6 44 44 H 1.08994 * 109.52149 * 297.07006 * 23 6 5 45 45 H 1.09003 * 109.57171 * 176.91978 * 23 6 5 46 46 H 1.09004 * 109.48210 * 182.40671 * 24 23 6 47 47 H 1.09001 * 109.48630 * 62.36993 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6053 1.9817 -0.8416 5 6 3.5658 1.4445 -0.1258 6 6 4.1715 0.7373 1.0905 7 1 3.8504 -0.3042 1.1041 8 7 5.6372 0.8006 1.0162 9 6 6.1259 0.2260 -0.2450 10 6 7.6466 0.3827 -0.3186 11 7 8.2619 -0.2877 0.8355 12 6 9.7276 -0.2244 0.7611 13 6 10.1670 1.2166 0.7228 14 1 9.4384 2.0063 0.8322 15 6 11.4989 1.5268 0.5480 16 7 12.3860 0.5651 0.4142 17 14 12.0434 3.3130 0.4999 18 1 12.3743 3.7668 1.8746 19 1 13.2429 3.4417 -0.3660 20 1 10.9459 4.1505 -0.0472 21 6 7.7731 0.2868 2.0967 22 6 6.2525 0.1296 2.1699 23 6 3.6923 1.4379 2.3657 24 6 2.1618 1.4361 2.3952 25 8 1.6632 2.0812 1.2215 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8570 0.9189 -1.0352 32 1 3.9266 2.4722 -0.1666 33 1 5.8668 -0.8319 -0.2873 34 1 5.6657 0.7473 -1.0845 35 1 7.9042 1.4418 -0.3037 36 1 8.0148 -0.0683 -1.2399 37 1 10.1571 -0.7120 1.6362 38 1 10.0679 -0.7322 -0.1414 39 1 13.3231 0.7833 0.2909 40 1 8.0322 1.3448 2.1390 41 1 8.2334 -0.2341 2.9363 42 1 5.8846 0.5806 3.0916 43 1 5.9946 -0.9293 2.1550 44 1 4.0557 2.4654 2.3751 45 1 4.0741 0.9085 3.2387 46 1 1.8145 1.9710 3.2792 47 1 1.7999 0.4084 2.4265 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601315516.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:08 Heat of formation + Delta-G solvation = -44.252005 kcal Electronic energy + Delta-G solvation = -23700.732718 eV Core-core repulsion = 20496.979692 eV Total energy + Delta-G solvation = -3203.753026 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.32992 -38.38411 -35.49913 -33.67497 -32.73701 -31.45405 -30.84835 -29.84900 -27.54118 -25.28851 -24.24649 -23.88738 -22.32563 -22.11592 -21.36707 -19.21319 -19.10584 -17.00934 -16.40366 -16.20631 -15.54193 -14.94636 -14.87640 -14.60386 -14.21288 -14.14834 -13.99086 -13.61050 -13.36091 -13.14343 -12.99722 -12.68808 -12.43656 -12.16283 -11.87159 -11.66131 -11.47373 -11.18388 -11.09230 -11.07549 -10.97271 -10.84774 -10.56583 -10.39877 -10.32811 -10.11873 -9.91295 -9.81472 -9.59099 -9.46686 -8.41907 -8.04055 -7.15437 -6.01261 -4.10164 3.28829 3.35599 3.39563 3.69539 4.04810 4.42409 4.49700 4.66251 4.76458 4.83045 4.96047 5.01080 5.10966 5.21332 5.25839 5.29008 5.32287 5.41828 5.51062 5.53514 5.60916 5.64322 5.69372 5.74111 5.78771 5.87445 5.92988 5.97336 6.02223 6.05624 6.09166 6.15714 6.29498 6.34207 6.63359 6.79065 6.89571 7.09703 7.22888 7.36212 7.42482 7.53703 7.91583 8.07213 8.30165 8.31641 9.00687 9.56749 11.03779 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031005 B = 0.003615 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.858275 B = 7742.781600 C = 7882.356637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.159 4.159 3 C 0.093 3.907 4 H 0.101 0.899 5 C -0.144 4.144 6 C 0.086 3.914 7 H 0.038 0.962 8 N -0.531 5.531 9 C 0.057 3.943 10 C 0.066 3.934 11 N -0.544 5.544 12 C 0.187 3.813 13 C -0.548 4.548 14 H 0.059 0.941 15 C 0.064 3.936 16 N -0.892 5.892 17 Si 0.889 3.111 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.064 3.936 22 C 0.058 3.942 23 C -0.149 4.149 24 C 0.060 3.940 25 O -0.375 6.375 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.031 0.969 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.067 0.933 37 H 0.026 0.974 38 H 0.034 0.966 39 H 0.262 0.738 40 H 0.047 0.953 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.032 0.968 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.092 0.908 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.804 -0.813 0.958 21.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.197 4.197 3 C 0.035 3.965 4 H 0.119 0.881 5 C -0.182 4.182 6 C -0.023 4.023 7 H 0.056 0.944 8 N -0.256 5.256 9 C -0.071 4.071 10 C -0.063 4.063 11 N -0.269 5.269 12 C 0.062 3.938 13 C -0.587 4.587 14 H 0.077 0.923 15 C -0.138 4.138 16 N -0.531 5.531 17 Si 0.717 3.283 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.065 4.065 22 C -0.070 4.070 23 C -0.187 4.187 24 C -0.018 4.018 25 O -0.294 6.294 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.050 0.950 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.044 0.956 38 H 0.052 0.948 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.050 0.950 44 H 0.099 0.901 45 H 0.091 0.909 46 H 0.110 0.890 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -21.703 -0.701 0.930 21.735 hybrid contribution 0.802 0.699 -0.033 1.064 sum -20.902 -0.003 0.898 20.921 Atomic orbital electron populations 1.21700 0.95246 1.01310 1.02230 1.22213 0.96864 0.97623 1.02993 1.22238 0.93748 0.92996 0.87565 0.88081 1.22320 0.94888 1.02697 0.98321 1.21597 0.88447 0.97168 0.95043 0.94372 1.62183 1.04203 1.56201 1.02992 1.22279 0.96788 0.96768 0.91272 1.21907 0.90827 0.98898 0.94684 1.62689 1.10200 1.53217 1.00758 1.19727 0.80630 0.95705 0.97787 1.21774 0.93066 0.93477 1.50343 0.92300 1.24966 0.96778 0.97125 0.94959 1.69950 1.02032 1.31710 1.49433 0.86640 0.78224 0.85462 0.77982 1.20661 1.21190 1.19894 1.21921 0.91668 0.99291 0.93607 1.22251 0.95868 0.95975 0.92913 1.22287 0.95809 1.02791 0.97833 1.22580 0.93115 0.97749 0.88322 1.87967 1.74577 1.53182 1.13627 0.92988 0.92257 0.92749 0.91018 0.91234 0.90746 0.90042 0.95034 0.91066 0.93237 0.91459 0.95564 0.94818 0.92856 0.93494 0.91522 0.91159 0.95000 0.90090 0.90894 0.88967 0.93133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.81 37.16 0.36 -0.79 16 2 C -0.16 -1.38 4.74 -26.73 -0.13 -1.51 16 3 C 0.09 0.91 3.29 -26.68 -0.09 0.82 16 4 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 5 C -0.14 -1.62 4.46 -26.59 -0.12 -1.74 16 6 C 0.09 1.06 1.72 -67.53 -0.12 0.94 16 7 H 0.04 0.48 6.73 -51.93 -0.35 0.13 16 8 N -0.53 -8.15 4.58 -226.27 -1.04 -9.18 16 9 C 0.06 0.91 5.23 -3.77 -0.02 0.89 16 10 C 0.07 1.31 5.24 -3.77 -0.02 1.29 16 11 N -0.54 -11.85 4.92 -235.91 -1.16 -13.01 16 12 C 0.19 4.86 5.14 -4.98 -0.03 4.84 16 13 C -0.55 -15.16 7.66 -34.44 -0.26 -15.43 16 14 H 0.06 1.64 5.82 -52.49 -0.31 1.33 16 15 C 0.06 1.81 5.46 -17.82 -0.10 1.72 16 16 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 17 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 C 0.06 1.26 5.32 -3.77 -0.02 1.24 16 22 C 0.06 0.92 5.33 -3.77 -0.02 0.90 16 23 C -0.15 -1.66 5.10 -26.59 -0.14 -1.80 16 24 C 0.06 0.58 6.52 37.20 0.24 0.82 16 25 O -0.37 -4.20 10.13 -35.23 -0.36 -4.56 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.49 7.83 -51.93 -0.41 0.09 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.64 4.97 -51.93 -0.26 0.38 16 31 H 0.07 0.80 6.48 -51.93 -0.34 0.46 16 32 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 1.02 6.14 -51.93 -0.32 0.70 16 35 H 0.05 1.10 6.62 -51.92 -0.34 0.76 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.03 0.73 8.12 -51.93 -0.42 0.30 16 38 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.05 1.03 6.78 -51.93 -0.35 0.68 16 41 H 0.07 1.30 8.12 -51.93 -0.42 0.87 16 42 H 0.07 0.99 6.23 -51.93 -0.32 0.67 16 43 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.07 0.77 6.54 -51.93 -0.34 0.43 16 46 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.05 0.45 6.23 -51.93 -0.32 0.13 16 LS Contribution 343.26 15.07 5.17 5.17 Total: -1.00 -29.46 343.26 -10.39 -39.85 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -8.29 Total: -1.44 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -0.44 Total: -7.80 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: -1.46 Total: -47.87 kcal Atomic # 8 Polarization: -4.20 SS G_CDS: -0.36 Total: -4.56 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.46 -10.39 -39.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601315516.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.401 kcal (2) G-P(sol) polarization free energy of solvation -29.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds