Wall clock time and date at job start Tue Mar 31 2020 05:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47466 * 2 1 4 4 H 1.08999 * 109.47679 * 305.02102 * 3 2 1 5 5 C 1.53093 * 109.48040 * 185.00055 * 3 2 1 6 6 C 1.53182 * 109.16029 * 297.62257 * 5 3 2 7 7 H 1.08996 * 109.54279 * 62.88813 * 6 5 3 8 8 N 1.46895 * 109.53996 * 183.15759 * 6 5 3 9 9 C 1.46962 * 111.00028 * 303.79478 * 8 6 5 10 10 C 1.53046 * 109.36678 * 176.81281 * 9 8 6 11 11 N 1.46961 * 109.36456 * 58.40297 * 10 9 8 12 12 C 1.46894 * 110.99976 * 176.81003 * 11 10 9 13 13 C 1.50704 * 109.47325 * 58.98428 * 12 11 10 14 14 H 1.08000 * 119.99605 * 5.00146 * 13 12 11 15 15 C 1.37875 * 120.00111 * 185.00689 * 13 12 11 16 16 N 1.31518 * 119.99909 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99769 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46949 * 90.00300 * 17 15 13 19 19 H 1.48499 * 109.47202 * 209.99913 * 17 15 13 20 20 H 1.48500 * 109.47514 * 329.99860 * 17 15 13 21 21 C 1.46954 * 110.87832 * 300.68297 * 11 10 9 22 22 C 1.46959 * 111.00034 * 180.02562 * 8 6 5 23 23 C 1.53181 * 109.03383 * 303.02121 * 6 5 3 24 24 C 1.53086 * 109.16331 * 56.98504 * 23 6 5 25 25 O 1.42903 * 109.48063 * 65.05185 * 3 2 1 26 26 H 1.08996 * 109.47677 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47314 * 300.00571 * 1 2 3 28 28 H 1.09001 * 109.46854 * 60.00012 * 1 2 3 29 29 H 1.09006 * 109.47314 * 239.99429 * 2 1 3 30 30 H 1.09001 * 109.46854 * 119.99988 * 2 1 3 31 31 H 1.08993 * 109.52368 * 57.53137 * 5 3 2 32 32 H 1.09002 * 109.52073 * 177.72241 * 5 3 2 33 33 H 1.08998 * 109.48986 * 296.78566 * 9 8 6 34 34 H 1.09004 * 109.48640 * 56.85033 * 9 8 6 35 35 H 1.09008 * 109.49008 * 298.43970 * 10 9 8 36 36 H 1.08993 * 109.50871 * 178.38104 * 10 9 8 37 37 H 1.09001 * 109.46853 * 178.97847 * 12 11 10 38 38 H 1.09000 * 109.47448 * 298.97932 * 12 11 10 39 39 H 0.97003 * 119.99838 * 179.97438 * 16 15 13 40 40 H 1.09006 * 109.49083 * 299.34596 * 21 11 10 41 41 H 1.09000 * 109.50383 * 179.29735 * 21 11 10 42 42 H 1.09001 * 109.48650 * 303.15075 * 22 8 6 43 43 H 1.08997 * 109.49237 * 63.19420 * 22 8 6 44 44 H 1.08994 * 109.52149 * 297.07006 * 23 6 5 45 45 H 1.09003 * 109.57171 * 176.91978 * 23 6 5 46 46 H 1.09004 * 109.48210 * 182.40671 * 24 23 6 47 47 H 1.09001 * 109.48630 * 62.36993 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6053 1.9817 -0.8416 5 6 3.5658 1.4445 -0.1258 6 6 4.1715 0.7373 1.0905 7 1 3.8504 -0.3042 1.1041 8 7 5.6372 0.8006 1.0162 9 6 6.1259 0.2260 -0.2450 10 6 7.6466 0.3827 -0.3186 11 7 8.2619 -0.2877 0.8355 12 6 9.7276 -0.2244 0.7611 13 6 10.1670 1.2166 0.7228 14 1 9.4384 2.0063 0.8322 15 6 11.4989 1.5268 0.5480 16 7 12.3860 0.5651 0.4142 17 14 12.0434 3.3130 0.4999 18 1 12.3743 3.7668 1.8746 19 1 13.2429 3.4417 -0.3660 20 1 10.9459 4.1505 -0.0472 21 6 7.7731 0.2868 2.0967 22 6 6.2525 0.1296 2.1699 23 6 3.6923 1.4379 2.3657 24 6 2.1618 1.4361 2.3952 25 8 1.6632 2.0812 1.2215 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8570 0.9189 -1.0352 32 1 3.9266 2.4722 -0.1666 33 1 5.8668 -0.8319 -0.2873 34 1 5.6657 0.7473 -1.0845 35 1 7.9042 1.4418 -0.3037 36 1 8.0148 -0.0683 -1.2399 37 1 10.1571 -0.7120 1.6362 38 1 10.0679 -0.7322 -0.1414 39 1 13.3231 0.7833 0.2909 40 1 8.0322 1.3448 2.1390 41 1 8.2334 -0.2341 2.9363 42 1 5.8846 0.5806 3.0916 43 1 5.9946 -0.9293 2.1550 44 1 4.0557 2.4654 2.3751 45 1 4.0741 0.9085 3.2387 46 1 1.8145 1.9710 3.2792 47 1 1.7999 0.4084 2.4265 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601315516.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:07 Heat of formation + Delta-G solvation = -64.473319 kcal Electronic energy + Delta-G solvation = -23701.609580 eV Core-core repulsion = 20496.979692 eV Total energy + Delta-G solvation = -3204.629888 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.27985 -39.72986 -36.96751 -34.67819 -34.37952 -32.78830 -32.07464 -30.86994 -29.28901 -26.92512 -25.30124 -25.01631 -23.66997 -23.36531 -22.67285 -20.72128 -20.04216 -18.50203 -17.95279 -17.12701 -16.77893 -16.41762 -15.99830 -15.85239 -15.75257 -15.61710 -15.15154 -14.78950 -14.46448 -14.38356 -14.22354 -13.76369 -13.75068 -13.50225 -13.13498 -12.89410 -12.80531 -12.63583 -12.47136 -12.37357 -12.21706 -12.12316 -11.95604 -11.92256 -11.80618 -11.74803 -11.30708 -11.16932 -10.96428 -10.62430 -10.37145 -9.27610 -9.02745 -8.17325 -6.36840 1.35393 1.35751 1.46934 2.35970 2.81455 3.02588 3.07282 3.36581 3.67391 3.80873 3.98335 4.01214 4.06641 4.20375 4.22994 4.26634 4.41451 4.44074 4.48217 4.50024 4.50729 4.59867 4.70187 4.77312 4.78487 4.82323 4.88537 4.94401 5.06083 5.09399 5.10907 5.13992 5.18688 5.21157 5.23549 5.30425 5.31965 5.38934 5.44635 5.71780 6.01450 6.09648 6.14453 6.31067 6.34446 6.50612 6.83876 7.34603 8.85197 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031005 B = 0.003615 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.858275 B = 7742.781600 C = 7882.356637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.156 4.156 3 C 0.094 3.906 4 H 0.110 0.890 5 C -0.141 4.141 6 C 0.088 3.912 7 H 0.046 0.954 8 N -0.544 5.544 9 C 0.069 3.931 10 C 0.067 3.933 11 N -0.543 5.543 12 C 0.201 3.799 13 C -0.555 4.555 14 H 0.054 0.946 15 C 0.012 3.988 16 N -0.926 5.926 17 Si 0.958 3.042 18 H -0.273 1.273 19 H -0.279 1.279 20 H -0.270 1.270 21 C 0.065 3.935 22 C 0.070 3.930 23 C -0.146 4.146 24 C 0.061 3.939 25 O -0.390 6.390 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.038 0.962 34 H 0.092 0.908 35 H 0.022 0.978 36 H 0.061 0.939 37 H 0.003 0.997 38 H 0.007 0.993 39 H 0.266 0.734 40 H 0.021 0.979 41 H 0.064 0.936 42 H 0.093 0.907 43 H 0.038 0.962 44 H 0.064 0.936 45 H 0.080 0.920 46 H 0.106 0.894 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.934 -0.318 1.092 23.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.193 4.193 3 C 0.036 3.964 4 H 0.128 0.872 5 C -0.179 4.179 6 C -0.020 4.020 7 H 0.064 0.936 8 N -0.270 5.270 9 C -0.058 4.058 10 C -0.061 4.061 11 N -0.267 5.267 12 C 0.074 3.926 13 C -0.594 4.594 14 H 0.072 0.928 15 C -0.187 4.187 16 N -0.566 5.566 17 Si 0.783 3.217 18 H -0.199 1.199 19 H -0.204 1.204 20 H -0.195 1.195 21 C -0.064 4.064 22 C -0.058 4.058 23 C -0.184 4.184 24 C -0.016 4.016 25 O -0.309 6.309 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.110 0.890 35 H 0.040 0.960 36 H 0.079 0.921 37 H 0.021 0.979 38 H 0.025 0.975 39 H 0.074 0.926 40 H 0.039 0.961 41 H 0.082 0.918 42 H 0.111 0.889 43 H 0.056 0.944 44 H 0.082 0.918 45 H 0.099 0.901 46 H 0.124 0.876 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.861 -0.206 1.069 23.886 hybrid contribution 1.448 0.521 -0.072 1.540 sum -22.414 0.315 0.997 22.438 Atomic orbital electron populations 1.21676 0.94565 1.01832 1.02167 1.22179 0.97416 0.96594 1.03130 1.22291 0.92607 0.93953 0.87523 0.87218 1.22292 0.95983 1.01554 0.98058 1.21669 0.86132 0.97920 0.96266 0.93567 1.62162 1.06332 1.56172 1.02304 1.22123 0.93539 0.97560 0.92624 1.21917 0.93809 0.96729 0.93675 1.62633 1.07682 1.53911 1.02493 1.19384 0.83463 0.94509 0.95263 1.21951 0.93267 0.94028 1.50141 0.92796 1.25807 0.96850 1.01562 0.94507 1.70064 1.02454 1.33900 1.50197 0.85562 0.77850 0.80029 0.78297 1.19858 1.20431 1.19475 1.21953 0.94733 0.97304 0.92376 1.22113 0.92727 0.96704 0.94277 1.22264 0.97016 1.01648 0.97460 1.22655 0.91831 0.98660 0.88418 1.87956 1.74690 1.53918 1.14304 0.92188 0.92857 0.92298 0.90387 0.91550 0.90152 0.91695 0.94378 0.88978 0.95987 0.92070 0.97905 0.97508 0.92554 0.96109 0.91770 0.88915 0.94355 0.91753 0.90149 0.87596 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.81 71.98 0.71 -1.18 16 2 C -0.16 -2.27 4.74 30.59 0.15 -2.12 16 3 C 0.09 1.63 3.29 30.63 0.10 1.73 16 4 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 5 C -0.14 -2.87 4.46 30.69 0.14 -2.73 16 6 C 0.09 1.96 1.72 45.04 0.08 2.04 16 7 H 0.05 1.00 6.73 -2.39 -0.02 0.98 16 8 N -0.54 -15.87 4.58 -869.77 -3.98 -19.86 16 9 C 0.07 2.13 5.23 86.31 0.45 2.58 16 10 C 0.07 2.72 5.24 86.31 0.45 3.17 16 11 N -0.54 -24.16 4.92 -900.29 -4.43 -28.58 16 12 C 0.20 10.86 5.14 85.56 0.44 11.30 16 13 C -0.55 -31.57 7.66 25.60 0.20 -31.38 16 14 H 0.05 3.08 5.82 -2.91 -0.02 3.06 16 15 C 0.01 0.69 5.46 84.65 0.46 1.16 16 16 N -0.93 -55.89 13.29 21.45 0.28 -55.61 16 17 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 18 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 21 C 0.07 2.58 5.32 86.31 0.46 3.04 16 22 C 0.07 2.11 5.33 86.31 0.46 2.57 16 23 C -0.15 -2.93 5.10 30.68 0.16 -2.77 16 24 C 0.06 1.03 6.52 72.01 0.47 1.50 16 25 O -0.39 -7.85 10.13 -148.98 -1.51 -9.36 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.05 0.76 7.83 -2.38 -0.02 0.74 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.07 1.02 4.97 -2.39 -0.01 1.00 16 31 H 0.08 1.53 6.48 -2.39 -0.02 1.51 16 32 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.09 2.45 6.14 -2.39 -0.01 2.43 16 35 H 0.02 1.00 6.62 -2.38 -0.02 0.99 16 36 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.00 0.16 8.12 -2.39 -0.02 0.14 16 38 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 40 H 0.02 0.93 6.78 -2.38 -0.02 0.91 16 41 H 0.06 2.53 8.12 -2.39 -0.02 2.51 16 42 H 0.09 2.41 6.23 -2.39 -0.01 2.39 16 43 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.08 1.49 6.54 -2.39 -0.02 1.47 16 46 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 47 H 0.06 0.92 6.23 -2.39 -0.01 0.91 16 Total: -1.00 -64.03 343.26 -1.97 -66.00 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 0.93 Total: 11.65 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 4.71 Total: -11.10 kcal Atomic # 7 Polarization: -95.92 SS G_CDS: -8.12 Total: -104.05 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -1.51 Total: -9.36 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -64.03 -1.97 -66.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601315516.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.524 kcal (2) G-P(sol) polarization free energy of solvation -64.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds