Wall clock time and date at job start Tue Mar 31 2020 05:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47108 * 2 1 4 4 H 1.09000 * 109.48908 * 305.02609 * 3 2 1 5 5 C 1.53092 * 109.48073 * 184.99675 * 3 2 1 6 6 C 1.53181 * 109.16265 * 182.40989 * 5 3 2 7 7 H 1.09007 * 109.54138 * 297.02123 * 6 5 3 8 8 N 1.46897 * 109.54227 * 176.84932 * 6 5 3 9 9 C 1.46955 * 111.00019 * 180.17302 * 8 6 5 10 10 C 1.53055 * 109.38393 * 183.17488 * 9 8 6 11 11 N 1.46962 * 109.36143 * 301.63524 * 10 9 8 12 12 C 1.46906 * 110.99364 * 183.16635 * 11 10 9 13 13 C 1.50703 * 109.46978 * 300.66650 * 12 11 10 14 14 H 1.07994 * 120.00286 * 4.82267 * 13 12 11 15 15 C 1.37881 * 119.99769 * 184.81999 * 13 12 11 16 16 N 1.31514 * 120.00156 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99859 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47152 * 59.99885 * 17 15 13 19 19 H 1.48498 * 109.46739 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46868 * 299.99854 * 17 15 13 21 21 C 1.46957 * 110.89737 * 59.28860 * 11 10 9 22 22 C 1.46959 * 111.00226 * 303.97415 * 8 6 5 23 23 C 1.53178 * 109.11153 * 56.93614 * 6 5 3 24 24 C 1.53105 * 109.15631 * 303.15360 * 23 6 5 25 25 O 1.42902 * 109.48668 * 57.47165 * 24 23 6 26 26 H 1.09003 * 109.46875 * 60.00391 * 1 2 3 27 27 H 1.08998 * 109.47021 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47083 * 300.00155 * 1 2 3 29 29 H 1.08998 * 109.47539 * 240.00122 * 2 1 3 30 30 H 1.09003 * 109.46875 * 119.99609 * 2 1 3 31 31 H 1.09001 * 109.51904 * 62.50345 * 5 3 2 32 32 H 1.08996 * 109.52477 * 302.31365 * 5 3 2 33 33 H 1.08995 * 109.49344 * 303.15447 * 9 8 6 34 34 H 1.08998 * 109.48652 * 63.19787 * 9 8 6 35 35 H 1.09000 * 109.48795 * 61.58026 * 10 9 8 36 36 H 1.08997 * 109.48954 * 181.64266 * 10 9 8 37 37 H 1.08995 * 109.47053 * 60.66578 * 12 11 10 38 38 H 1.08999 * 109.47041 * 180.67172 * 12 11 10 39 39 H 0.96992 * 120.00258 * 179.97438 * 16 15 13 40 40 H 1.09005 * 109.48458 * 180.71934 * 21 11 10 41 41 H 1.08998 * 109.50979 * 60.66697 * 21 11 10 42 42 H 1.08999 * 109.48790 * 296.78107 * 22 8 6 43 43 H 1.09003 * 109.48722 * 56.81801 * 22 8 6 44 44 H 1.08998 * 109.52257 * 62.97087 * 23 6 5 45 45 H 1.08998 * 109.52217 * 183.15817 * 23 6 5 46 46 H 1.09003 * 109.40312 * 297.49429 * 24 23 6 47 47 H 1.08993 * 109.49136 * 177.50880 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9820 -0.8415 5 6 3.5658 1.4446 -0.1257 6 6 4.0734 2.8886 -0.0644 7 1 3.6805 3.4495 -0.9125 8 7 5.5417 2.8955 -0.1085 9 6 6.0639 4.2678 -0.0473 10 6 7.5887 4.2373 -0.1753 11 7 8.1518 3.4134 0.9036 12 6 9.6202 3.4204 0.8595 13 6 10.0854 2.8837 -0.4697 14 1 9.3646 2.6421 -1.2367 15 6 11.4314 2.7013 -0.7065 16 7 12.3092 2.9951 0.2277 17 14 12.0082 2.0367 -2.3543 18 1 11.5745 2.9551 -3.4377 19 1 13.4896 1.9348 -2.3558 20 1 11.4187 0.6923 -2.5795 21 6 7.6296 2.0411 0.8422 22 6 6.1049 2.0722 0.9706 23 6 3.5968 3.5327 1.2411 24 6 2.0699 3.4480 1.3150 25 8 1.6632 2.0813 1.2215 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 3.8534 0.9974 -1.0772 32 1 3.9995 0.8710 0.6933 33 1 5.6421 4.8542 -0.8635 34 1 5.7879 4.7197 0.9055 35 1 7.8642 3.8107 -1.1398 36 1 7.9803 5.2517 -0.1009 37 1 9.9826 4.4405 0.9864 38 1 10.0108 2.7936 1.6612 39 1 13.2561 2.8664 0.0612 40 1 8.0515 1.4547 1.6585 41 1 7.9052 1.5890 -0.1105 42 1 5.8298 2.4989 1.9351 43 1 5.7126 1.0579 0.8967 44 1 4.0312 3.0025 2.0886 45 1 3.9067 4.5774 1.2662 46 1 1.6355 4.0137 0.4907 47 1 1.7280 3.8651 2.2622 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601315517.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:11 Heat of formation + Delta-G solvation = -46.290929 kcal Electronic energy + Delta-G solvation = -23570.314862 eV Core-core repulsion = 20366.473422 eV Total energy + Delta-G solvation = -3203.841440 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.20966 -38.29164 -35.58183 -34.14684 -32.70201 -31.29837 -30.51993 -29.82998 -27.55357 -25.35703 -24.22367 -23.56871 -22.85774 -21.85829 -21.15059 -20.10155 -18.63187 -16.68433 -16.43314 -16.26762 -15.43890 -15.02628 -14.82112 -14.45514 -14.29598 -14.19274 -13.89729 -13.82092 -13.57898 -13.23484 -12.96571 -12.66889 -12.07626 -11.97276 -11.87094 -11.75426 -11.37188 -11.23268 -11.10886 -11.01703 -10.93547 -10.75286 -10.65823 -10.55451 -10.27511 -10.24275 -9.94881 -9.83863 -9.63372 -9.45900 -8.41491 -7.98732 -7.14733 -6.00982 -4.10009 3.30157 3.34776 3.37738 3.62400 4.04116 4.42265 4.56335 4.68251 4.77795 4.93078 4.98872 5.01595 5.07781 5.16887 5.24946 5.27004 5.29372 5.45939 5.51687 5.55323 5.60902 5.66186 5.74860 5.76088 5.84217 5.87211 5.92334 5.96421 5.98656 6.05249 6.11415 6.19673 6.24401 6.38360 6.64221 6.79676 6.89000 7.11558 7.23459 7.34362 7.42490 7.53812 7.91787 8.07798 8.29218 8.32998 9.00669 9.56819 11.04077 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028778 B = 0.003618 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.729325 B = 7736.155970 C = 8228.861145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C 0.092 3.908 4 H 0.056 0.944 5 C -0.145 4.145 6 C 0.085 3.915 7 H 0.078 0.922 8 N -0.528 5.528 9 C 0.057 3.943 10 C 0.064 3.936 11 N -0.544 5.544 12 C 0.187 3.813 13 C -0.549 4.549 14 H 0.059 0.941 15 C 0.064 3.936 16 N -0.893 5.893 17 Si 0.889 3.111 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.065 3.935 22 C 0.054 3.946 23 C -0.191 4.191 24 C 0.068 3.932 25 O -0.379 6.379 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.037 0.963 35 H 0.048 0.952 36 H 0.067 0.933 37 H 0.027 0.973 38 H 0.033 0.967 39 H 0.262 0.738 40 H 0.066 0.934 41 H 0.047 0.953 42 H 0.036 0.964 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.047 0.953 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.766 -1.696 0.167 21.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C 0.034 3.966 4 H 0.074 0.926 5 C -0.183 4.183 6 C -0.024 4.024 7 H 0.096 0.904 8 N -0.251 5.251 9 C -0.071 4.071 10 C -0.065 4.065 11 N -0.268 5.268 12 C 0.062 3.938 13 C -0.588 4.588 14 H 0.077 0.923 15 C -0.138 4.138 16 N -0.531 5.531 17 Si 0.717 3.283 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.064 4.064 22 C -0.074 4.074 23 C -0.230 4.230 24 C -0.009 4.009 25 O -0.299 6.299 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.045 0.955 38 H 0.051 0.949 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.065 0.935 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.632 -1.785 0.353 21.708 hybrid contribution 0.768 -0.123 -1.141 1.381 sum -20.864 -1.908 -0.788 20.966 Atomic orbital electron populations 1.21717 0.95403 1.01394 1.02133 1.21541 0.96492 0.94441 1.02868 1.22141 0.93601 0.93931 0.86911 0.92620 1.22359 0.95219 0.96974 1.03742 1.21722 0.88636 0.95911 0.96086 0.90423 1.62372 1.04344 1.12072 1.46349 1.22239 0.96514 0.88681 0.99632 1.21928 0.91188 0.98127 0.95253 1.62685 1.10734 1.09698 1.43689 1.19721 0.80542 0.97362 0.96187 1.21746 0.92224 1.44003 1.00802 0.92333 1.24967 0.96860 0.95293 0.96677 1.69933 1.01790 1.48232 1.33171 0.86699 0.77501 0.79600 0.84473 1.20264 1.21255 1.20255 1.21913 0.91494 0.91823 1.01158 1.22320 0.96027 0.96928 0.92128 1.22908 0.97018 1.02416 1.00657 1.22461 0.93716 0.83037 1.01686 1.87904 1.78553 1.24704 1.38700 0.93053 0.92874 0.92013 0.90565 0.91083 0.90169 0.90519 0.91538 0.94476 0.93360 0.91469 0.95488 0.94900 0.92790 0.91531 0.93484 0.94545 0.91048 0.90585 0.90645 0.93493 0.89159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.81 37.16 0.36 -0.83 16 2 C -0.12 -1.02 5.64 -26.73 -0.15 -1.17 16 3 C 0.09 0.93 2.64 -26.68 -0.07 0.86 16 4 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 5 C -0.15 -1.63 4.45 -26.59 -0.12 -1.74 16 6 C 0.09 1.05 2.39 -67.53 -0.16 0.88 16 7 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 8 N -0.53 -8.06 4.74 -226.27 -1.07 -9.13 16 9 C 0.06 0.91 5.14 -3.77 -0.02 0.89 16 10 C 0.06 1.26 5.24 -3.76 -0.02 1.24 16 11 N -0.54 -11.83 4.92 -235.90 -1.16 -12.99 16 12 C 0.19 4.88 5.14 -4.97 -0.03 4.85 16 13 C -0.55 -15.19 7.67 -34.44 -0.26 -15.46 16 14 H 0.06 1.62 5.82 -52.49 -0.31 1.32 16 15 C 0.06 1.82 5.46 -17.82 -0.10 1.73 16 16 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 17 Si 0.89 21.63 29.54 -169.99 -5.02 16.60 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 C 0.07 1.30 5.32 -3.77 -0.02 1.28 16 22 C 0.05 0.86 4.84 -3.77 -0.02 0.85 16 23 C -0.19 -2.16 4.70 -26.59 -0.13 -2.28 16 24 C 0.07 0.68 6.84 37.21 0.25 0.93 16 25 O -0.38 -4.31 9.95 -35.23 -0.35 -4.66 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.55 7.82 -51.93 -0.41 0.14 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 0.93 6.12 -51.93 -0.32 0.61 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.04 0.58 6.57 -51.93 -0.34 0.24 16 35 H 0.05 1.06 6.45 -51.93 -0.34 0.73 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.03 0.92 8.12 -51.93 -0.42 0.50 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.07 1.33 8.13 -51.93 -0.42 0.90 16 41 H 0.05 1.04 6.95 -51.93 -0.36 0.68 16 42 H 0.04 0.59 6.50 -51.93 -0.34 0.25 16 43 H 0.07 1.05 6.00 -51.93 -0.31 0.74 16 44 H 0.08 0.97 6.42 -51.93 -0.33 0.64 16 45 H 0.07 0.85 6.67 -51.93 -0.35 0.50 16 46 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 346.62 15.07 5.22 5.22 Total: -1.00 -29.31 346.62 -10.56 -39.87 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -8.45 Total: -1.25 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -0.47 Total: -7.98 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -1.50 Total: -47.81 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.35 Total: -4.66 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.31 -10.56 -39.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601315517.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.420 kcal (2) G-P(sol) polarization free energy of solvation -29.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds