Wall clock time and date at job start Tue Mar 31 2020 05:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47273 * 2 1 4 4 H 1.09001 * 109.46609 * 304.99564 * 3 2 1 5 5 C 1.52993 * 109.47108 * 64.99160 * 3 2 1 6 6 C 1.52996 * 109.47135 * 184.99818 * 3 2 1 7 7 C 1.52997 * 109.46947 * 174.99568 * 6 3 2 8 8 C 1.50706 * 109.47238 * 179.97438 * 7 6 3 9 9 O 1.21279 * 119.99507 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00020 * 180.02562 * 8 7 6 11 11 C 1.47076 * 120.88167 * 359.72564 * 10 8 7 12 12 C 1.53696 * 108.27715 * 128.75387 * 11 10 8 13 13 N 1.46902 * 109.25654 * 54.08248 * 12 11 10 14 14 C 1.46901 * 111.00088 * 172.60547 * 13 12 11 15 15 C 1.50694 * 109.47301 * 294.30540 * 14 13 12 16 16 H 1.08001 * 120.00293 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00377 * 180.02562 * 15 14 13 18 18 N 1.31524 * 119.99822 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00454 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46859 * 89.99719 * 19 17 15 21 21 H 1.48500 * 109.47139 * 209.99670 * 19 17 15 22 22 H 1.48499 * 109.46697 * 329.99780 * 19 17 15 23 23 C 1.46899 * 111.26580 * 296.75835 * 13 12 11 24 24 C 1.47079 * 120.87919 * 180.02562 * 10 8 7 25 25 H 1.08997 * 109.47193 * 300.00543 * 1 2 3 26 26 H 1.09000 * 109.46552 * 60.00549 * 1 2 3 27 27 H 1.08998 * 109.46890 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47672 * 239.99477 * 2 1 3 29 29 H 1.09003 * 109.47058 * 119.99482 * 2 1 3 30 30 H 1.09001 * 109.47056 * 60.00678 * 5 3 2 31 31 H 1.09001 * 109.47093 * 179.97438 * 5 3 2 32 32 H 1.08992 * 109.47909 * 300.00405 * 5 3 2 33 33 H 1.09001 * 109.47372 * 54.99878 * 6 3 2 34 34 H 1.09004 * 109.47108 * 294.99622 * 6 3 2 35 35 H 1.09001 * 109.46832 * 59.99979 * 7 6 3 36 36 H 1.09000 * 109.47611 * 300.00276 * 7 6 3 37 37 H 1.09000 * 109.62492 * 248.52171 * 11 10 8 38 38 H 1.09000 * 109.63009 * 9.10253 * 11 10 8 39 39 H 1.08999 * 109.64826 * 294.07785 * 12 11 10 40 40 H 1.08999 * 109.41747 * 173.94454 * 12 11 10 41 41 H 1.09002 * 109.46799 * 54.30304 * 14 13 12 42 42 H 1.08995 * 109.47093 * 174.29991 * 14 13 12 43 43 H 0.96995 * 120.00135 * 180.02562 * 18 17 15 44 44 H 1.09001 * 109.49468 * 303.14253 * 23 13 12 45 45 H 1.09009 * 109.48769 * 183.06782 * 23 13 12 46 46 H 1.09002 * 109.62681 * 350.88906 * 24 10 8 47 47 H 1.08990 * 109.63146 * 111.47793 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6351 2.1266 1.3072 6 6 3.5648 1.4443 -0.1257 7 6 4.0645 2.8850 -0.2512 8 6 5.5665 2.8869 -0.3743 9 8 6.1770 1.8390 -0.3633 10 7 6.2311 4.0529 -0.4967 11 6 5.5097 5.3344 -0.5183 12 6 6.1542 6.2680 0.5186 13 7 7.5962 6.3631 0.2547 14 6 8.2222 7.3794 1.1110 15 6 7.6924 8.7415 0.7436 16 1 6.9638 8.8422 -0.0472 17 6 8.1384 9.8592 1.4163 18 7 9.0261 9.7367 2.3790 19 14 7.4822 11.5477 0.9604 20 1 6.2754 11.8456 1.7729 21 1 8.5237 12.5721 1.2270 22 1 7.1258 11.5675 -0.4810 23 6 8.2546 5.0600 0.4167 24 6 7.6966 4.0772 -0.6188 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.0697 1.5877 2.1491 31 1 1.9989 3.1542 1.3074 32 1 0.5489 2.1254 1.3968 33 1 3.8571 0.8800 -1.0112 34 1 4.0029 0.9836 0.7598 35 1 3.7722 3.4493 0.6344 36 1 3.6264 3.3457 -1.1365 37 1 5.5825 5.7788 -1.5110 38 1 4.4627 5.1695 -0.2638 39 1 5.9933 5.8698 1.5204 40 1 5.7047 7.2581 0.4437 41 1 7.9895 7.1684 2.1547 42 1 9.3026 7.3592 0.9684 43 1 9.3397 10.5230 2.8525 44 1 8.0645 4.6786 1.4199 45 1 9.3285 5.1741 0.2680 46 1 8.0963 3.0808 -0.4305 47 1 7.9753 4.4033 -1.6207 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602202823.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:13 Heat of formation + Delta-G solvation = -56.975862 kcal Electronic energy + Delta-G solvation = -22662.427272 eV Core-core repulsion = 19458.122498 eV Total energy + Delta-G solvation = -3204.304774 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.03313 -37.83942 -37.04511 -34.38575 -32.69728 -32.29074 -30.77811 -29.06283 -28.13619 -26.23792 -25.23506 -23.39481 -22.77740 -21.76337 -20.42254 -20.03856 -18.52280 -17.00737 -16.40862 -15.92805 -15.74779 -15.16499 -14.79957 -14.63810 -14.41443 -14.10103 -13.88765 -13.70198 -13.46486 -13.26302 -12.96344 -12.55446 -12.29605 -12.18588 -11.97797 -11.85338 -11.75648 -11.31385 -11.13135 -11.07956 -10.97558 -10.82547 -10.74659 -10.69475 -10.65013 -10.57905 -10.54461 -9.91325 -9.57213 -9.29772 -8.52229 -8.41944 -7.34831 -6.08516 -4.10794 2.76986 3.16088 3.27359 3.34274 3.37854 4.36569 4.42404 4.57559 4.64998 4.77245 4.84825 5.02001 5.09972 5.20392 5.25528 5.27876 5.32817 5.34189 5.39328 5.49031 5.51971 5.57554 5.64473 5.70454 5.75935 5.78790 5.80658 5.86787 5.88841 5.92281 6.02816 6.05715 6.21894 6.26763 6.27704 6.43600 6.44977 6.70276 7.19950 7.25616 7.58841 7.72203 7.99317 8.09931 8.31791 8.45051 8.96394 9.53846 11.02290 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024162 B = 0.003138 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.585419 B = 8921.370274 C = 9712.366513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.093 4.093 4 H 0.070 0.930 5 C -0.153 4.153 6 C -0.098 4.098 7 C -0.141 4.141 8 C 0.512 3.488 9 O -0.554 6.554 10 N -0.610 5.610 11 C 0.109 3.891 12 C 0.050 3.950 13 N -0.536 5.536 14 C 0.194 3.806 15 C -0.510 4.510 16 H 0.064 0.936 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.898 3.102 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.273 1.273 23 C 0.041 3.959 24 C 0.117 3.883 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.025 0.975 40 H 0.097 0.903 41 H -0.009 1.009 42 H 0.032 0.968 43 H 0.262 0.738 44 H 0.026 0.974 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.280 -14.922 -4.824 21.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.112 4.112 4 H 0.088 0.912 5 C -0.210 4.210 6 C -0.136 4.136 7 C -0.181 4.181 8 C 0.300 3.700 9 O -0.433 6.433 10 N -0.343 5.343 11 C -0.014 4.014 12 C -0.079 4.079 13 N -0.261 5.261 14 C 0.069 3.931 15 C -0.548 4.548 16 H 0.082 0.918 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.726 3.274 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.088 4.088 24 C -0.005 4.005 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.043 0.957 40 H 0.115 0.885 41 H 0.009 0.991 42 H 0.050 0.950 43 H 0.072 0.928 44 H 0.044 0.956 45 H 0.099 0.901 46 H 0.105 0.895 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.775 -15.211 -5.168 21.163 hybrid contribution -0.286 0.951 0.761 1.251 sum -14.061 -14.260 -4.407 20.506 Atomic orbital electron populations 1.21827 0.96028 1.01389 1.01865 1.21564 0.95687 0.96384 1.02095 1.21205 0.95286 0.96218 0.98484 0.91174 1.21957 1.01185 1.00653 0.97169 1.21392 0.94060 0.94841 1.03292 1.21760 0.92220 0.99939 1.04133 1.20724 0.90241 0.83133 0.75871 1.90653 1.70053 1.31209 1.51342 1.48278 1.07865 1.06336 1.71829 1.22109 0.95270 0.83019 1.01024 1.22414 0.90642 0.99792 0.95083 1.62076 1.01717 1.05132 1.57189 1.19727 0.94953 0.88929 0.89525 1.21130 1.24665 0.90665 1.18373 0.91803 1.25004 0.95156 0.99399 0.95055 1.69960 1.30706 1.29958 1.23054 0.86492 0.78480 0.83551 0.78863 1.20726 1.21238 1.19732 1.22410 0.99360 0.90625 0.96421 1.21739 0.78973 1.00023 0.99784 0.92493 0.92844 0.93015 0.92012 0.91984 0.92668 0.92418 0.92568 0.91334 0.91281 0.88792 0.89083 0.90605 0.90145 0.95706 0.88497 0.99132 0.95018 0.92849 0.95598 0.90114 0.89502 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.67 37.16 0.36 -0.66 16 2 C -0.12 -0.91 5.40 -26.73 -0.14 -1.06 16 3 C -0.09 -0.76 2.39 -90.62 -0.22 -0.97 16 4 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 5 C -0.15 -1.19 8.70 37.15 0.32 -0.87 16 6 C -0.10 -1.00 3.97 -26.73 -0.11 -1.10 16 7 C -0.14 -1.50 3.82 -27.88 -0.11 -1.60 16 8 C 0.51 7.54 7.71 -10.98 -0.08 7.46 16 9 O -0.55 -9.91 15.43 5.56 0.09 -9.82 16 10 N -0.61 -9.18 3.00 -172.17 -0.52 -9.70 16 11 C 0.11 1.51 6.53 -3.37 -0.02 1.49 16 12 C 0.05 0.89 5.47 -3.46 -0.02 0.87 16 13 N -0.54 -11.10 4.62 -235.44 -1.09 -12.18 16 14 C 0.19 4.90 4.72 -4.98 -0.02 4.88 16 15 C -0.51 -13.79 8.41 -34.44 -0.29 -14.08 16 16 H 0.06 1.68 7.13 -52.49 -0.37 1.31 16 17 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -26.21 13.29 55.43 0.74 -25.47 16 19 Si 0.90 21.02 29.54 -169.99 -5.02 15.99 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 C 0.04 0.74 5.62 -3.68 -0.02 0.72 16 24 C 0.12 1.86 6.60 -3.59 -0.02 1.84 16 25 H 0.06 0.37 6.56 -51.93 -0.34 0.03 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.45 6.56 -51.93 -0.34 0.11 16 32 H 0.06 0.39 6.56 -51.93 -0.34 0.05 16 33 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 34 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 35 H 0.09 0.92 6.09 -51.93 -0.32 0.60 16 36 H 0.09 0.81 7.99 -51.93 -0.41 0.40 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.08 0.87 6.02 -51.93 -0.31 0.56 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 1.83 6.67 -51.93 -0.35 1.48 16 41 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 42 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 43 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 1.42 7.99 -51.92 -0.41 1.00 16 46 H 0.09 1.38 7.06 -51.93 -0.37 1.01 16 47 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 362.34 15.07 5.46 5.46 Total: -1.00 -30.76 362.34 -9.42 -40.19 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -8.61 Total: -2.82 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -0.47 Total: -1.65 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -0.87 Total: -47.35 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.76 -9.42 -40.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602202823.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.790 kcal (2) G-P(sol) polarization free energy of solvation -30.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds