Wall clock time and date at job start Tue Mar 31 2020 05:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08990 * 109.47170 * 54.99895 * 3 2 1 5 5 C 1.53005 * 109.46867 * 294.99684 * 3 2 1 6 6 C 1.53002 * 109.46776 * 174.99999 * 3 2 1 7 7 C 1.53001 * 109.46871 * 184.99808 * 6 3 2 8 8 C 1.50708 * 109.47038 * 180.02562 * 7 6 3 9 9 O 1.21280 * 119.99569 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99783 * 179.97438 * 8 7 6 11 11 C 1.47080 * 120.88423 * 359.72522 * 10 8 7 12 12 C 1.53696 * 108.27816 * 128.74750 * 11 10 8 13 13 N 1.46905 * 109.25514 * 54.08588 * 12 11 10 14 14 C 1.46897 * 110.99879 * 172.60687 * 13 12 11 15 15 C 1.50702 * 109.46908 * 294.29613 * 14 13 12 16 16 H 1.07998 * 120.00154 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99656 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00025 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99854 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46947 * 59.99747 * 19 17 15 21 21 H 1.48493 * 109.47205 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47084 * 300.00059 * 19 17 15 23 23 C 1.46903 * 111.26638 * 296.75337 * 13 12 11 24 24 C 1.47079 * 120.87934 * 179.97438 * 10 8 7 25 25 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 26 26 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 29 29 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 30 30 H 1.09001 * 109.47099 * 60.00379 * 5 3 2 31 31 H 1.09004 * 109.46908 * 180.02562 * 5 3 2 32 32 H 1.09000 * 109.47443 * 300.00098 * 5 3 2 33 33 H 1.08993 * 109.47416 * 304.99509 * 6 3 2 34 34 H 1.09001 * 109.46966 * 65.00241 * 6 3 2 35 35 H 1.09003 * 109.47362 * 299.99912 * 7 6 3 36 36 H 1.09001 * 109.47215 * 59.99942 * 7 6 3 37 37 H 1.08997 * 109.63030 * 248.52313 * 11 10 8 38 38 H 1.09007 * 109.62821 * 9.10124 * 11 10 8 39 39 H 1.08994 * 109.65378 * 294.07941 * 12 11 10 40 40 H 1.09000 * 109.42003 * 173.94614 * 12 11 10 41 41 H 1.08998 * 109.47429 * 54.30059 * 14 13 12 42 42 H 1.09005 * 109.46800 * 174.30050 * 14 13 12 43 43 H 0.96994 * 119.99537 * 180.02562 * 18 17 15 44 44 H 1.09000 * 109.49131 * 303.14700 * 23 13 12 45 45 H 1.08994 * 109.49232 * 183.06194 * 23 13 12 46 46 H 1.08998 * 109.62671 * 350.89835 * 24 10 8 47 47 H 1.08994 * 109.62879 * 111.47955 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4443 0.1257 7 6 4.0645 2.8849 0.2511 8 6 5.5665 2.8867 0.3743 9 8 6.1770 1.8389 0.3634 10 7 6.2312 4.0528 0.4966 11 6 5.5108 5.3351 0.5060 12 6 5.9696 6.1368 1.7344 13 7 7.4344 6.2481 1.7208 14 6 7.9034 7.1528 2.7787 15 6 7.4275 8.5532 2.4895 16 1 6.8354 8.7511 1.6083 17 6 7.7479 9.5817 3.3501 18 7 8.4693 9.3407 4.4230 19 14 7.1574 11.3173 2.9921 20 1 5.6731 11.3359 2.9477 21 1 7.6316 12.2320 4.0614 22 1 7.6974 11.7637 1.6827 23 6 8.0701 4.9287 1.8363 24 6 7.6967 4.0771 0.6187 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3635 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.5489 2.1252 -1.3970 31 1 1.9989 3.1541 -1.3076 32 1 2.0698 1.5874 -2.1492 33 1 3.8570 0.8801 1.0113 34 1 4.0029 0.9835 -0.7597 35 1 3.7723 3.4493 -0.6345 36 1 3.6264 3.3457 1.1364 37 1 5.7394 5.8902 -0.4037 38 1 4.4379 5.1519 0.5666 39 1 5.6520 5.6274 2.6441 40 1 5.5289 7.1331 1.7022 41 1 7.5064 6.8252 3.7395 42 1 8.9929 7.1390 2.8120 43 1 8.6944 10.0642 5.0286 44 1 7.7231 4.4361 2.7446 45 1 9.1526 5.0490 1.8779 46 1 8.0697 3.0619 0.7538 47 1 8.1318 4.5135 -0.2804 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602202824.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:17 Heat of formation + Delta-G solvation = -56.930149 kcal Electronic energy + Delta-G solvation = -22637.486162 eV Core-core repulsion = 19433.183370 eV Total energy + Delta-G solvation = -3204.302792 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.03302 -37.84210 -37.04642 -34.38474 -32.69711 -32.28983 -30.78196 -29.06659 -28.14139 -26.24210 -25.23491 -23.39395 -22.77790 -21.76106 -20.43289 -20.03148 -18.51909 -17.02044 -16.40703 -15.90130 -15.73424 -15.22289 -14.84635 -14.56339 -14.44131 -14.09643 -13.79104 -13.66940 -13.62048 -13.25861 -12.95276 -12.52286 -12.33789 -12.18809 -11.95184 -11.85166 -11.78506 -11.30371 -11.16076 -11.05013 -10.97918 -10.82525 -10.74014 -10.69636 -10.64664 -10.59053 -10.55251 -9.90966 -9.57189 -9.31366 -8.51549 -8.41934 -7.34859 -6.08257 -4.10607 2.76974 3.16077 3.29140 3.34068 3.36161 4.36626 4.42325 4.57271 4.64534 4.77316 4.85288 5.01678 5.09697 5.19291 5.25587 5.28321 5.32301 5.33187 5.39283 5.49211 5.52470 5.56545 5.64539 5.70307 5.75257 5.77590 5.82614 5.85216 5.86707 5.92568 6.02920 6.05784 6.21261 6.26304 6.27775 6.43681 6.45191 6.70327 7.20010 7.25761 7.58830 7.72043 7.99441 8.10100 8.31790 8.45173 8.96253 9.53924 11.02520 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024168 B = 0.003101 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.269030 B = 9026.280750 C = 9765.506377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.094 4.094 4 H 0.070 0.930 5 C -0.152 4.152 6 C -0.098 4.098 7 C -0.141 4.141 8 C 0.512 3.488 9 O -0.554 6.554 10 N -0.610 5.610 11 C 0.109 3.891 12 C 0.050 3.950 13 N -0.536 5.536 14 C 0.194 3.806 15 C -0.511 4.511 16 H 0.063 0.937 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.899 3.101 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.276 1.276 23 C 0.041 3.959 24 C 0.117 3.883 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.025 0.975 40 H 0.097 0.903 41 H -0.009 1.009 42 H 0.032 0.968 43 H 0.263 0.737 44 H 0.026 0.974 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.119 -14.090 -9.306 21.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.113 4.113 4 H 0.089 0.911 5 C -0.209 4.209 6 C -0.136 4.136 7 C -0.181 4.181 8 C 0.300 3.700 9 O -0.433 6.433 10 N -0.343 5.343 11 C -0.014 4.014 12 C -0.079 4.079 13 N -0.261 5.261 14 C 0.069 3.931 15 C -0.549 4.549 16 H 0.081 0.919 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.727 3.273 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.201 1.201 23 C -0.088 4.088 24 C -0.005 4.005 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.043 0.957 40 H 0.115 0.885 41 H 0.009 0.991 42 H 0.050 0.950 43 H 0.072 0.928 44 H 0.044 0.956 45 H 0.099 0.901 46 H 0.105 0.895 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.564 -14.342 -9.591 21.344 hybrid contribution -0.416 0.859 0.800 1.245 sum -12.980 -13.483 -8.792 20.678 Atomic orbital electron populations 1.21827 0.96024 1.01396 1.01868 1.21561 0.95689 0.96374 1.02098 1.21210 0.95313 0.96245 0.98495 0.91118 1.21953 1.01180 1.00577 0.97160 1.21390 0.94043 0.94852 1.03289 1.21762 0.92239 0.99930 1.04120 1.20724 0.90222 0.83119 0.75902 1.90653 1.70071 1.31194 1.51339 1.48278 1.07922 1.06324 1.71781 1.22110 0.95653 0.83445 1.00212 1.22414 0.90477 1.00472 0.94577 1.62081 1.04563 1.08488 1.50984 1.19722 0.96064 0.90628 0.86686 1.21095 1.33435 0.91998 1.08400 0.91855 1.25002 0.95267 0.99292 0.95022 1.69948 1.38020 1.32742 1.12967 0.86546 0.79005 0.83851 0.77915 1.20250 1.21357 1.20126 1.22397 1.00068 0.90771 0.95584 1.21725 0.79294 1.00628 0.98871 0.92806 0.92528 0.93012 0.92010 0.91980 0.92581 0.92464 0.92714 0.91315 0.91298 0.88864 0.89012 0.90608 0.90141 0.95701 0.88493 0.99132 0.95028 0.92787 0.95602 0.90106 0.89504 0.91063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.67 37.16 0.36 -0.67 16 2 C -0.12 -0.92 5.40 -26.73 -0.14 -1.06 16 3 C -0.09 -0.76 2.39 -90.62 -0.22 -0.98 16 4 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 5 C -0.15 -1.12 8.70 37.16 0.32 -0.79 16 6 C -0.10 -1.00 3.97 -26.73 -0.11 -1.10 16 7 C -0.14 -1.50 3.82 -27.88 -0.11 -1.60 16 8 C 0.51 7.55 7.71 -10.98 -0.08 7.46 16 9 O -0.55 -9.91 15.43 5.56 0.09 -9.82 16 10 N -0.61 -9.19 3.00 -172.20 -0.52 -9.70 16 11 C 0.11 1.51 6.53 -3.36 -0.02 1.49 16 12 C 0.05 0.89 5.47 -3.46 -0.02 0.87 16 13 N -0.54 -11.10 4.62 -235.49 -1.09 -12.19 16 14 C 0.19 4.91 4.72 -4.98 -0.02 4.89 16 15 C -0.51 -13.82 8.41 -34.44 -0.29 -14.11 16 16 H 0.06 1.67 7.13 -52.49 -0.37 1.29 16 17 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 18 N -0.90 -26.22 13.29 55.43 0.74 -25.48 16 19 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 23 C 0.04 0.74 5.62 -3.72 -0.02 0.72 16 24 C 0.12 1.86 6.59 -3.62 -0.02 1.84 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.36 6.56 -51.93 -0.34 0.02 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.37 6.57 -51.93 -0.34 0.03 16 31 H 0.06 0.41 6.56 -51.93 -0.34 0.07 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.79 8.10 -51.93 -0.42 0.36 16 34 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 35 H 0.09 0.84 6.41 -51.93 -0.33 0.51 16 36 H 0.09 0.89 7.67 -51.93 -0.40 0.49 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.08 0.87 6.02 -51.92 -0.31 0.56 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 1.84 6.67 -51.93 -0.35 1.49 16 41 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 42 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 43 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 1.42 7.99 -51.93 -0.41 1.01 16 46 H 0.09 1.38 7.06 -51.93 -0.37 1.01 16 47 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 362.33 15.07 5.46 5.46 Total: -1.00 -30.74 362.33 -9.42 -40.16 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -8.61 Total: -2.84 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -0.47 Total: -1.59 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: -0.87 Total: -47.38 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.74 -9.42 -40.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602202824.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.767 kcal (2) G-P(sol) polarization free energy of solvation -30.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds