Wall clock time and date at job start Tue Mar 31 2020 05:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47099 * 2 1 4 4 H 1.08999 * 109.46657 * 305.00187 * 3 2 1 5 5 C 1.52997 * 109.46907 * 65.00051 * 3 2 1 6 6 C 1.52996 * 109.47028 * 185.00323 * 3 2 1 7 7 H 1.08999 * 109.47290 * 299.99476 * 6 3 2 8 8 C 1.53004 * 109.47509 * 59.99817 * 6 3 2 9 9 C 1.50703 * 109.46907 * 179.97438 * 6 3 2 10 10 O 1.21277 * 120.00357 * 328.20776 * 9 6 3 11 11 N 1.34783 * 119.99710 * 148.20446 * 9 6 3 12 12 C 1.47080 * 120.87963 * 4.89103 * 11 9 6 13 13 C 1.53698 * 108.27461 * 128.75257 * 12 11 9 14 14 N 1.46906 * 109.25788 * 54.08127 * 13 12 11 15 15 C 1.46900 * 110.99976 * 172.60553 * 14 13 12 16 16 C 1.50694 * 109.47152 * 294.30382 * 15 14 13 17 17 H 1.07998 * 120.00486 * 359.97438 * 16 15 14 18 18 C 1.37884 * 119.99907 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99747 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00083 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47038 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.46898 * 119.99719 * 20 18 16 23 23 H 1.48499 * 109.47361 * 239.99748 * 20 18 16 24 24 C 1.46893 * 111.26752 * 296.75644 * 14 13 12 25 25 C 1.47079 * 120.87967 * 185.16723 * 11 9 6 26 26 H 1.09008 * 109.46901 * 299.99851 * 1 2 3 27 27 H 1.08997 * 109.47261 * 59.99575 * 1 2 3 28 28 H 1.08996 * 109.47376 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46945 * 240.00095 * 2 1 3 30 30 H 1.08998 * 109.47635 * 119.99747 * 2 1 3 31 31 H 1.09004 * 109.46475 * 180.02562 * 5 3 2 32 32 H 1.08999 * 109.47233 * 299.99674 * 5 3 2 33 33 H 1.08999 * 109.47351 * 60.00561 * 5 3 2 34 34 H 1.09002 * 109.46334 * 53.82055 * 8 6 3 35 35 H 1.08993 * 109.47556 * 173.82124 * 8 6 3 36 36 H 1.09001 * 109.46867 * 293.82439 * 8 6 3 37 37 H 1.08997 * 109.63267 * 248.51635 * 12 11 9 38 38 H 1.08995 * 109.62869 * 9.10616 * 12 11 9 39 39 H 1.09000 * 109.64717 * 294.07818 * 13 12 11 40 40 H 1.08998 * 109.42357 * 173.94914 * 13 12 11 41 41 H 1.09006 * 109.46783 * 54.30838 * 15 14 13 42 42 H 1.08996 * 109.46851 * 174.30044 * 15 14 13 43 43 H 0.96994 * 119.99987 * 180.02562 * 19 18 16 44 44 H 1.09005 * 109.49937 * 303.14363 * 24 14 13 45 45 H 1.09000 * 109.51875 * 183.07734 * 24 14 13 46 46 H 1.09000 * 109.63219 * 350.89595 * 25 11 9 47 47 H 1.08995 * 109.62509 * 111.48214 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5648 1.4444 -0.1258 7 1 3.9995 0.9054 0.7160 8 6 3.9696 0.7603 -1.4332 9 6 4.0670 2.8652 -0.1264 10 8 3.3852 3.7493 -0.6002 11 7 5.2740 3.1535 0.3996 12 6 6.1619 2.0849 0.8821 13 6 7.5454 2.2822 0.2423 14 7 8.0141 3.6479 0.5130 15 6 9.4040 3.8247 0.0715 16 6 10.3101 2.9552 0.9045 17 1 9.8951 2.3337 1.6842 18 6 11.6691 2.9538 0.6719 19 7 12.1746 3.7110 -0.2772 20 14 12.7924 1.8765 1.7049 21 1 11.9826 1.1269 2.6988 22 1 13.5067 0.9181 0.8237 23 1 13.7808 2.7284 2.4138 24 6 7.1335 4.6463 -0.1080 25 6 5.7356 4.5455 0.5118 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.9982 3.1544 1.3071 32 1 0.5489 2.1253 1.3969 33 1 2.0699 1.5876 2.1491 34 1 3.4479 1.2314 -2.2663 35 1 5.0456 0.8580 -1.5764 36 1 3.7034 -0.2957 -1.3882 37 1 6.2459 2.1406 1.9674 38 1 5.7582 1.1148 0.5925 39 1 7.4766 2.1279 -0.8345 40 1 8.2474 1.5656 0.6686 41 1 9.4910 3.5406 -0.9773 42 1 9.6928 4.8690 0.1901 43 1 13.1306 3.7098 -0.4410 44 1 7.0703 4.4592 -1.1800 45 1 7.5364 5.6444 0.0639 46 1 5.0498 5.2029 -0.0226 47 1 5.7792 4.8332 1.5622 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602204548.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:00 Heat of formation + Delta-G solvation = -50.316098 kcal Electronic energy + Delta-G solvation = -23379.549530 eV Core-core repulsion = 20175.533545 eV Total energy + Delta-G solvation = -3204.015985 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.35116 -37.93380 -36.59015 -34.40765 -32.64404 -32.11380 -30.60338 -29.45156 -28.24192 -25.74223 -24.62222 -24.01394 -23.15557 -21.91441 -20.76217 -19.82388 -18.33036 -17.16618 -16.40769 -15.86174 -15.43431 -15.02214 -14.77121 -14.42215 -14.25019 -14.16927 -13.96129 -13.61067 -13.46406 -13.23625 -12.82932 -12.43696 -12.29235 -12.06683 -11.99976 -11.89585 -11.80006 -11.34986 -11.30190 -11.08637 -10.99577 -10.86084 -10.73068 -10.70578 -10.60118 -10.53613 -10.51046 -9.90804 -9.42444 -9.28345 -8.51716 -8.40605 -7.34106 -6.08471 -4.10580 2.77488 3.15671 3.26922 3.34753 3.38540 4.36768 4.44774 4.51032 4.70224 4.77810 4.92073 5.03995 5.14222 5.25525 5.27521 5.35879 5.39313 5.41814 5.43476 5.50408 5.52990 5.64224 5.67205 5.71118 5.76832 5.80530 5.84066 5.86287 5.88860 6.00528 6.02820 6.09685 6.26281 6.28383 6.28975 6.44804 6.45854 6.71847 7.20431 7.26163 7.60230 7.72871 7.99708 8.10319 8.33728 8.45513 8.96991 9.54108 11.02418 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028827 B = 0.003532 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.077316 B = 7925.580115 C = 8416.505332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.074 4.074 4 H 0.081 0.919 5 C -0.151 4.151 6 C -0.108 4.108 7 H 0.091 0.909 8 C -0.143 4.143 9 C 0.521 3.479 10 O -0.551 6.551 11 N -0.608 5.608 12 C 0.107 3.893 13 C 0.051 3.949 14 N -0.535 5.535 15 C 0.193 3.807 16 C -0.509 4.509 17 H 0.064 0.936 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.898 3.102 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.041 3.959 25 C 0.117 3.883 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.025 0.975 40 H 0.097 0.903 41 H -0.009 1.009 42 H 0.032 0.968 43 H 0.261 0.739 44 H 0.026 0.974 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.153 -6.951 1.091 20.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.093 4.093 4 H 0.099 0.901 5 C -0.208 4.208 6 C -0.129 4.129 7 H 0.109 0.891 8 C -0.201 4.201 9 C 0.309 3.691 10 O -0.429 6.429 11 N -0.341 5.341 12 C -0.016 4.016 13 C -0.078 4.078 14 N -0.261 5.261 15 C 0.069 3.931 16 C -0.548 4.548 17 H 0.083 0.917 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.088 4.088 25 C -0.005 4.005 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.043 0.957 40 H 0.115 0.885 41 H 0.009 0.991 42 H 0.050 0.950 43 H 0.071 0.929 44 H 0.044 0.956 45 H 0.098 0.902 46 H 0.105 0.895 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.341 -6.347 1.264 20.395 hybrid contribution 1.009 -0.611 -0.358 1.233 sum -18.332 -6.958 0.906 19.629 Atomic orbital electron populations 1.21811 0.95875 1.01346 1.01991 1.21643 0.95938 0.96117 1.02176 1.21019 0.92530 0.96235 0.99488 0.90099 1.21909 1.01306 1.01046 0.96539 1.21413 0.97275 0.93596 1.00629 0.89076 1.21788 1.01968 1.00548 0.95782 1.20578 0.80610 0.90914 0.76950 1.90639 1.56808 1.49129 1.46352 1.48266 1.16710 1.08262 1.60902 1.22143 0.90190 0.89569 0.99680 1.22405 0.94341 0.93473 0.97597 1.62074 1.04440 1.01112 1.58441 1.19729 0.81461 0.97827 0.94127 1.21174 0.91209 1.24773 1.17613 0.91740 1.25004 0.98240 0.95913 0.95460 1.69967 1.12701 1.39492 1.31517 0.86442 0.80617 0.80224 0.80137 1.19609 1.21111 1.20995 1.22394 0.92570 0.97857 0.95974 1.21737 0.95205 0.82188 1.01410 0.92518 0.92763 0.92942 0.91544 0.91965 0.92210 0.92410 0.92991 0.91907 0.92025 0.91215 0.90697 0.90033 0.95729 0.88509 0.99135 0.95039 0.92907 0.95604 0.90154 0.89502 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.67 37.16 0.36 -0.77 16 2 C -0.12 -0.98 5.19 -26.73 -0.14 -1.12 16 3 C -0.07 -0.76 1.64 -90.62 -0.15 -0.91 16 4 H 0.08 0.96 7.85 -51.93 -0.41 0.55 16 5 C -0.15 -1.57 8.68 37.16 0.32 -1.25 16 6 C -0.11 -1.20 1.49 -91.77 -0.14 -1.34 16 7 H 0.09 0.90 6.40 -51.93 -0.33 0.57 16 8 C -0.14 -1.46 8.46 37.16 0.31 -1.15 16 9 C 0.52 7.70 5.77 -10.98 -0.06 7.64 16 10 O -0.55 -9.78 14.94 5.56 0.08 -9.69 16 11 N -0.61 -9.19 3.00 -172.18 -0.52 -9.71 16 12 C 0.11 1.51 6.31 -3.36 -0.02 1.49 16 13 C 0.05 0.92 5.47 -3.46 -0.02 0.90 16 14 N -0.54 -11.10 4.62 -235.46 -1.09 -12.18 16 15 C 0.19 4.90 4.72 -4.98 -0.02 4.88 16 16 C -0.51 -13.78 8.41 -34.44 -0.29 -14.07 16 17 H 0.06 1.71 7.13 -52.49 -0.37 1.33 16 18 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 19 N -0.90 -26.23 13.29 55.43 0.74 -25.49 16 20 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 24 C 0.04 0.75 5.62 -3.70 -0.02 0.73 16 25 C 0.12 1.86 6.61 -3.60 -0.02 1.83 16 26 H 0.06 0.41 6.57 -51.92 -0.34 0.07 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.50 6.31 -51.93 -0.33 0.18 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.76 6.71 -51.93 -0.35 0.41 16 32 H 0.06 0.53 6.56 -51.93 -0.34 0.19 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.68 7.87 -51.93 -0.41 0.27 16 36 H 0.07 0.56 6.66 -51.93 -0.35 0.22 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.08 0.93 5.37 -51.93 -0.28 0.65 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 1.84 6.67 -51.93 -0.35 1.50 16 41 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 42 H 0.03 0.86 7.97 -51.93 -0.41 0.44 16 43 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 1.41 7.99 -51.93 -0.41 1.00 16 46 H 0.09 1.38 7.04 -51.93 -0.37 1.01 16 47 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 357.02 15.07 5.38 5.38 Total: -1.00 -30.55 357.02 -8.82 -39.37 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -8.41 Total: -1.99 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 0.01 Total: -1.69 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: -0.87 Total: -47.39 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.08 Total: -9.69 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.55 -8.82 -39.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602204548.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.950 kcal (2) G-P(sol) polarization free energy of solvation -30.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds