Wall clock time and date at job start Tue Mar 31 2020 05:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46731 * 2 1 4 4 H 1.08995 * 109.47098 * 304.99590 * 3 2 1 5 5 C 1.52998 * 109.47265 * 65.00152 * 3 2 1 6 6 C 1.53002 * 109.46699 * 185.00025 * 3 2 1 7 7 H 1.08995 * 109.47225 * 300.00130 * 6 3 2 8 8 C 1.52996 * 109.47000 * 180.02562 * 6 3 2 9 9 C 1.50701 * 109.47294 * 60.00160 * 6 3 2 10 10 O 1.21285 * 119.99736 * 12.29696 * 9 6 3 11 11 N 1.34778 * 120.00199 * 192.29704 * 9 6 3 12 12 C 1.47076 * 120.87836 * 2.39457 * 11 9 6 13 13 C 1.53697 * 108.27446 * 128.75648 * 12 11 9 14 14 N 1.46899 * 109.25832 * 54.08344 * 13 12 11 15 15 C 1.46894 * 111.00165 * 172.60842 * 14 13 12 16 16 C 1.50699 * 109.47128 * 60.02592 * 15 14 13 17 17 H 1.07995 * 120.00217 * 358.20865 * 16 15 14 18 18 C 1.37879 * 119.99856 * 178.20894 * 16 15 14 19 19 N 1.31517 * 120.00154 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00173 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46698 * 59.99983 * 20 18 16 22 22 H 1.48499 * 109.47353 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46877 * 300.00412 * 20 18 16 24 24 C 1.46906 * 111.26659 * 296.75518 * 14 13 12 25 25 C 1.47076 * 120.87803 * 182.67408 * 11 9 6 26 26 H 1.08995 * 109.47474 * 59.99628 * 1 2 3 27 27 H 1.09002 * 109.46976 * 300.00036 * 1 2 3 28 28 H 1.09000 * 109.46986 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47256 * 119.99868 * 2 1 3 30 30 H 1.08995 * 109.46894 * 240.00641 * 2 1 3 31 31 H 1.08999 * 109.47135 * 300.00001 * 5 3 2 32 32 H 1.09008 * 109.46963 * 59.99937 * 5 3 2 33 33 H 1.08993 * 109.47375 * 179.97438 * 5 3 2 34 34 H 1.09001 * 109.47123 * 305.58029 * 8 6 3 35 35 H 1.08997 * 109.47576 * 65.57908 * 8 6 3 36 36 H 1.09006 * 109.47240 * 185.57959 * 8 6 3 37 37 H 1.09006 * 109.62460 * 248.52141 * 12 11 9 38 38 H 1.09001 * 109.62984 * 9.10450 * 12 11 9 39 39 H 1.08993 * 109.65086 * 294.07670 * 13 12 11 40 40 H 1.09002 * 109.41680 * 173.94235 * 13 12 11 41 41 H 1.09005 * 109.47608 * 180.02562 * 15 14 13 42 42 H 1.09002 * 109.47002 * 300.02508 * 15 14 13 43 43 H 0.97005 * 119.99909 * 180.02562 * 19 18 16 44 44 H 1.08999 * 109.49303 * 303.14639 * 24 14 13 45 45 H 1.09000 * 109.49494 * 183.06530 * 24 14 13 46 46 H 1.08998 * 109.63366 * 350.89412 * 25 11 9 47 47 H 1.08997 * 109.63041 * 111.47890 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6351 2.1266 1.3073 6 6 3.5647 1.4444 -0.1257 7 1 3.9994 0.9054 0.7160 8 6 4.0748 2.8869 -0.1251 9 6 3.9635 0.7707 -1.4134 10 8 3.1261 0.5330 -2.2580 11 7 5.2505 0.4323 -1.6266 12 6 6.2727 0.6639 -0.5948 13 6 7.0440 -0.6477 -0.3775 14 7 7.5610 -1.1251 -1.6670 15 6 8.4505 -2.2794 -1.4828 16 6 7.6890 -3.4002 -0.8233 17 1 6.6564 -3.2583 -0.5404 18 6 8.3105 -4.6069 -0.5810 19 7 9.5678 -4.7799 -0.9260 20 14 7.3669 -5.9960 0.2371 21 1 6.1945 -6.3579 -0.5996 22 1 8.2541 -7.1777 0.3845 23 1 6.9019 -5.5565 1.5772 24 6 6.4672 -1.4459 -2.5937 25 6 5.6711 -0.1727 -2.8995 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 0.8900 30 1 1.8932 -0.5137 -0.8900 31 1 0.5488 2.1253 1.3969 32 1 2.0699 1.5876 2.1492 33 1 1.9988 3.1541 1.3075 34 1 3.5656 3.4526 -0.9054 35 1 3.8738 3.3430 0.8442 36 1 5.1484 2.8928 -0.3138 37 1 6.9576 1.4443 -0.9266 38 1 5.7919 0.9659 0.3357 39 1 6.3780 -1.3984 0.0478 40 1 7.8756 -0.4703 0.3045 41 1 8.8194 -2.6125 -2.4529 42 1 9.2925 -1.9924 -0.8529 43 1 10.0049 -5.6290 -0.7559 44 1 5.8091 -2.1855 -2.1375 45 1 6.8803 -1.8476 -3.5189 46 1 4.7924 -0.4241 -3.4935 47 1 6.2992 0.5288 -3.4485 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602204549.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:03 Heat of formation + Delta-G solvation = -49.980548 kcal Electronic energy + Delta-G solvation = -23753.611674 eV Core-core repulsion = 20549.610240 eV Total energy + Delta-G solvation = -3204.001434 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.33059 -37.91925 -36.38793 -34.51105 -32.70310 -32.10976 -30.60222 -28.78115 -27.97704 -26.01813 -25.26182 -23.38098 -22.90459 -21.94875 -20.69710 -19.66501 -18.52882 -17.10149 -16.33672 -15.94230 -15.16889 -15.08916 -14.79613 -14.42899 -14.34151 -13.90848 -13.77155 -13.59107 -13.29512 -12.94033 -12.79849 -12.44347 -12.16453 -12.09716 -11.89901 -11.75175 -11.72887 -11.45868 -11.14546 -11.08592 -11.02671 -10.70577 -10.62498 -10.56926 -10.52072 -10.43675 -10.24320 -9.94838 -9.69937 -9.33356 -8.48425 -8.36662 -7.28252 -6.08511 -4.18076 2.83833 3.22392 3.24960 3.30305 3.32916 4.36041 4.50515 4.59887 4.76181 4.87636 5.04795 5.20499 5.21685 5.25579 5.33485 5.39074 5.42876 5.47345 5.51355 5.55356 5.61299 5.70507 5.73996 5.80718 5.85851 5.89900 5.95464 5.96707 6.02789 6.10170 6.11652 6.19445 6.38924 6.41284 6.48789 6.58475 6.70623 6.79332 7.18100 7.44741 7.65285 7.83451 7.94712 8.16345 8.21645 8.40252 8.91404 9.49380 10.96613 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018258 B = 0.004579 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.234316 B = 6112.853056 C = 6839.640928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.128 4.128 3 C -0.070 4.070 4 H 0.077 0.923 5 C -0.150 4.150 6 C -0.108 4.108 7 H 0.093 0.907 8 C -0.144 4.144 9 C 0.518 3.482 10 O -0.548 6.548 11 N -0.606 5.606 12 C 0.108 3.892 13 C 0.049 3.951 14 N -0.540 5.540 15 C 0.188 3.812 16 C -0.552 4.552 17 H 0.055 0.945 18 C 0.067 3.933 19 N -0.890 5.890 20 Si 0.888 3.112 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.277 1.277 24 C 0.051 3.949 25 C 0.115 3.885 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.043 0.957 40 H 0.078 0.922 41 H 0.033 0.967 42 H 0.031 0.969 43 H 0.263 0.737 44 H 0.042 0.958 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.676 14.392 3.333 18.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C -0.089 4.089 4 H 0.095 0.905 5 C -0.207 4.207 6 C -0.130 4.130 7 H 0.111 0.889 8 C -0.202 4.202 9 C 0.307 3.693 10 O -0.426 6.426 11 N -0.338 5.338 12 C -0.015 4.015 13 C -0.081 4.081 14 N -0.264 5.264 15 C 0.063 3.937 16 C -0.591 4.591 17 H 0.073 0.927 18 C -0.136 4.136 19 N -0.528 5.528 20 Si 0.716 3.284 21 H -0.203 1.203 22 H -0.211 1.211 23 H -0.203 1.203 24 C -0.079 4.079 25 C -0.008 4.008 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.062 0.938 40 H 0.096 0.904 41 H 0.051 0.949 42 H 0.049 0.951 43 H 0.073 0.927 44 H 0.060 0.940 45 H 0.095 0.905 46 H 0.104 0.896 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.668 14.504 2.668 18.805 hybrid contribution -0.710 -1.714 0.924 2.073 sum -12.378 12.789 3.592 18.158 Atomic orbital electron populations 1.21753 0.96104 1.01257 1.01339 1.21699 0.95880 0.96234 1.02757 1.20951 0.92463 0.97084 0.98385 0.90456 1.21948 1.01412 1.00318 0.97016 1.21387 0.97707 0.97558 0.96316 0.88859 1.21838 1.01536 0.94132 1.02688 1.20583 0.81673 0.78337 0.88729 1.90630 1.49655 1.55444 1.46890 1.48201 1.07524 1.60970 1.17150 1.22152 0.89992 0.98842 0.90554 1.22329 0.98346 0.94205 0.93202 1.62484 1.17419 1.36695 1.09839 1.19759 0.91470 0.85161 0.97346 1.21689 0.98219 0.98549 1.40664 0.92694 1.24944 0.94783 0.98462 0.95409 1.69929 1.10725 1.25211 1.46944 0.86721 0.79900 0.81758 0.80043 1.20254 1.21106 1.20273 1.22236 0.93265 0.94538 0.97820 1.21813 0.98790 0.95193 0.84998 0.92849 0.93009 0.93127 0.92677 0.90265 0.92340 0.92705 0.92508 0.92161 0.91317 0.91836 0.91068 0.90143 0.93844 0.90389 0.94873 0.95051 0.92681 0.94022 0.90465 0.89577 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.67 37.16 0.36 -1.22 16 2 C -0.13 -1.60 5.15 -26.73 -0.14 -1.73 16 3 C -0.07 -0.78 1.59 -90.62 -0.14 -0.92 16 4 H 0.08 0.95 7.97 -51.93 -0.41 0.54 16 5 C -0.15 -1.30 8.60 37.16 0.32 -0.98 16 6 C -0.11 -1.25 1.46 -91.77 -0.13 -1.39 16 7 H 0.09 1.03 6.87 -51.93 -0.36 0.68 16 8 C -0.14 -1.35 8.35 37.16 0.31 -1.04 16 9 C 0.52 7.89 6.38 -10.98 -0.07 7.82 16 10 O -0.55 -9.90 13.71 5.55 0.08 -9.83 16 11 N -0.61 -9.32 3.00 -172.18 -0.52 -9.84 16 12 C 0.11 1.49 5.31 -3.37 -0.02 1.48 16 13 C 0.05 0.87 5.18 -3.46 -0.02 0.85 16 14 N -0.54 -11.00 4.83 -235.46 -1.14 -12.14 16 15 C 0.19 4.67 5.11 -4.98 -0.03 4.64 16 16 C -0.55 -14.82 7.76 -34.44 -0.27 -15.08 16 17 H 0.05 1.48 5.86 -52.49 -0.31 1.17 16 18 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 19 N -0.89 -25.71 13.29 55.43 0.74 -24.98 16 20 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C 0.05 0.97 5.23 -3.69 -0.02 0.95 16 25 C 0.11 1.87 6.60 -3.60 -0.02 1.85 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.48 6.56 -51.93 -0.34 0.14 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.23 5.87 -51.93 -0.31 0.92 16 31 H 0.06 0.48 6.56 -51.93 -0.34 0.14 16 32 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 33 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.52 6.74 -51.93 -0.35 0.17 16 36 H 0.06 0.59 6.53 -51.93 -0.34 0.25 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.08 0.91 5.25 -51.93 -0.27 0.64 16 39 H 0.04 0.87 6.70 -51.93 -0.35 0.53 16 40 H 0.08 1.37 8.11 -51.93 -0.42 0.94 16 41 H 0.03 0.89 8.08 -51.93 -0.42 0.47 16 42 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 44 H 0.04 0.90 7.01 -51.93 -0.36 0.54 16 45 H 0.08 1.47 8.06 -51.93 -0.42 1.05 16 46 H 0.09 1.44 7.05 -51.93 -0.37 1.07 16 47 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 350.77 15.07 5.29 5.29 Total: -1.00 -29.80 350.77 -8.76 -38.56 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -8.22 Total: -0.30 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 0.03 Total: -3.02 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: -0.92 Total: -46.95 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.08 Total: -9.83 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.80 -8.76 -38.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602204549.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.418 kcal (2) G-P(sol) polarization free energy of solvation -29.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds