Wall clock time and date at job start Tue Mar 31 2020 05:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46731 * 2 1 4 4 H 1.08995 * 109.47098 * 304.99590 * 3 2 1 5 5 C 1.52998 * 109.47265 * 65.00152 * 3 2 1 6 6 C 1.53002 * 109.46699 * 185.00025 * 3 2 1 7 7 H 1.08995 * 109.47225 * 300.00130 * 6 3 2 8 8 C 1.52996 * 109.47000 * 180.02562 * 6 3 2 9 9 C 1.50701 * 109.47294 * 60.00160 * 6 3 2 10 10 O 1.21285 * 119.99736 * 12.29696 * 9 6 3 11 11 N 1.34778 * 120.00199 * 192.29704 * 9 6 3 12 12 C 1.47076 * 120.87836 * 2.39457 * 11 9 6 13 13 C 1.53697 * 108.27446 * 128.75648 * 12 11 9 14 14 N 1.46899 * 109.25832 * 54.08344 * 13 12 11 15 15 C 1.46894 * 111.00165 * 172.60842 * 14 13 12 16 16 C 1.50699 * 109.47128 * 60.02592 * 15 14 13 17 17 H 1.07995 * 120.00217 * 358.20865 * 16 15 14 18 18 C 1.37879 * 119.99856 * 178.20894 * 16 15 14 19 19 N 1.31517 * 120.00154 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00173 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46698 * 59.99983 * 20 18 16 22 22 H 1.48499 * 109.47353 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46877 * 300.00412 * 20 18 16 24 24 C 1.46906 * 111.26659 * 296.75518 * 14 13 12 25 25 C 1.47076 * 120.87803 * 182.67408 * 11 9 6 26 26 H 1.08995 * 109.47474 * 59.99628 * 1 2 3 27 27 H 1.09002 * 109.46976 * 300.00036 * 1 2 3 28 28 H 1.09000 * 109.46986 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47256 * 119.99868 * 2 1 3 30 30 H 1.08995 * 109.46894 * 240.00641 * 2 1 3 31 31 H 1.08999 * 109.47135 * 300.00001 * 5 3 2 32 32 H 1.09008 * 109.46963 * 59.99937 * 5 3 2 33 33 H 1.08993 * 109.47375 * 179.97438 * 5 3 2 34 34 H 1.09001 * 109.47123 * 305.58029 * 8 6 3 35 35 H 1.08997 * 109.47576 * 65.57908 * 8 6 3 36 36 H 1.09006 * 109.47240 * 185.57959 * 8 6 3 37 37 H 1.09006 * 109.62460 * 248.52141 * 12 11 9 38 38 H 1.09001 * 109.62984 * 9.10450 * 12 11 9 39 39 H 1.08993 * 109.65086 * 294.07670 * 13 12 11 40 40 H 1.09002 * 109.41680 * 173.94235 * 13 12 11 41 41 H 1.09005 * 109.47608 * 180.02562 * 15 14 13 42 42 H 1.09002 * 109.47002 * 300.02508 * 15 14 13 43 43 H 0.97005 * 119.99909 * 180.02562 * 19 18 16 44 44 H 1.08999 * 109.49303 * 303.14639 * 24 14 13 45 45 H 1.09000 * 109.49494 * 183.06530 * 24 14 13 46 46 H 1.08998 * 109.63366 * 350.89412 * 25 11 9 47 47 H 1.08997 * 109.63041 * 111.47890 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6351 2.1266 1.3073 6 6 3.5647 1.4444 -0.1257 7 1 3.9994 0.9054 0.7160 8 6 4.0748 2.8869 -0.1251 9 6 3.9635 0.7707 -1.4134 10 8 3.1261 0.5330 -2.2580 11 7 5.2505 0.4323 -1.6266 12 6 6.2727 0.6639 -0.5948 13 6 7.0440 -0.6477 -0.3775 14 7 7.5610 -1.1251 -1.6670 15 6 8.4505 -2.2794 -1.4828 16 6 7.6890 -3.4002 -0.8233 17 1 6.6564 -3.2583 -0.5404 18 6 8.3105 -4.6069 -0.5810 19 7 9.5678 -4.7799 -0.9260 20 14 7.3669 -5.9960 0.2371 21 1 6.1945 -6.3579 -0.5996 22 1 8.2541 -7.1777 0.3845 23 1 6.9019 -5.5565 1.5772 24 6 6.4672 -1.4459 -2.5937 25 6 5.6711 -0.1727 -2.8995 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 0.8900 30 1 1.8932 -0.5137 -0.8900 31 1 0.5488 2.1253 1.3969 32 1 2.0699 1.5876 2.1492 33 1 1.9988 3.1541 1.3075 34 1 3.5656 3.4526 -0.9054 35 1 3.8738 3.3430 0.8442 36 1 5.1484 2.8928 -0.3138 37 1 6.9576 1.4443 -0.9266 38 1 5.7919 0.9659 0.3357 39 1 6.3780 -1.3984 0.0478 40 1 7.8756 -0.4703 0.3045 41 1 8.8194 -2.6125 -2.4529 42 1 9.2925 -1.9924 -0.8529 43 1 10.0049 -5.6290 -0.7559 44 1 5.8091 -2.1855 -2.1375 45 1 6.8803 -1.8476 -3.5189 46 1 4.7924 -0.4241 -3.4935 47 1 6.2992 0.5288 -3.4485 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602204549.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:02 Heat of formation + Delta-G solvation = -68.465391 kcal Electronic energy + Delta-G solvation = -23754.413237 eV Core-core repulsion = 20549.610240 eV Total energy + Delta-G solvation = -3204.802997 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.52650 -39.32619 -37.47035 -36.06039 -34.42130 -33.37102 -31.93090 -30.00585 -29.27564 -27.31112 -26.59141 -24.71918 -24.38242 -23.32370 -21.94320 -20.85198 -19.78798 -18.55567 -18.09809 -17.15527 -16.75706 -16.35451 -16.00351 -15.96139 -15.59771 -15.34770 -15.18069 -14.76715 -14.52549 -14.12253 -13.83487 -13.63302 -13.45300 -13.39559 -13.13005 -12.93525 -12.88802 -12.59912 -12.55263 -12.46521 -12.42804 -12.31626 -12.19175 -11.96055 -11.85919 -11.65333 -11.50198 -11.39397 -11.29576 -10.63671 -10.51727 -9.70730 -9.06320 -8.19205 -6.38358 1.33481 1.34504 1.42564 1.66003 2.02766 2.33614 3.06187 3.28808 3.49329 3.70333 3.91797 4.01026 4.09211 4.17117 4.28732 4.34080 4.37216 4.42317 4.52759 4.57070 4.63048 4.66213 4.73606 4.75994 4.81172 4.88568 4.98245 4.99774 5.03257 5.12303 5.14272 5.17127 5.19796 5.20998 5.28967 5.29708 5.34816 5.50345 5.54873 5.61124 5.70710 5.98128 6.15724 6.43845 6.49595 6.81507 7.20238 7.33180 8.83044 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018258 B = 0.004579 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.234316 B = 6112.853056 C = 6839.640928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.130 4.130 3 C -0.067 4.067 4 H 0.063 0.937 5 C -0.144 4.144 6 C -0.104 4.104 7 H 0.104 0.896 8 C -0.140 4.140 9 C 0.513 3.487 10 O -0.581 6.581 11 N -0.611 5.611 12 C 0.119 3.881 13 C 0.047 3.953 14 N -0.535 5.535 15 C 0.201 3.799 16 C -0.558 4.558 17 H 0.049 0.951 18 C 0.017 3.983 19 N -0.922 5.922 20 Si 0.951 3.049 21 H -0.277 1.277 22 H -0.279 1.279 23 H -0.269 1.269 24 C 0.057 3.943 25 C 0.125 3.875 26 H 0.047 0.953 27 H 0.072 0.928 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.041 0.959 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.114 0.886 39 H 0.018 0.982 40 H 0.082 0.918 41 H 0.006 0.994 42 H 0.013 0.987 43 H 0.266 0.734 44 H 0.011 0.989 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.770 16.166 5.169 21.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C -0.086 4.086 4 H 0.081 0.919 5 C -0.201 4.201 6 C -0.125 4.125 7 H 0.122 0.878 8 C -0.197 4.197 9 C 0.303 3.697 10 O -0.462 6.462 11 N -0.344 5.344 12 C -0.003 4.003 13 C -0.082 4.082 14 N -0.258 5.258 15 C 0.074 3.926 16 C -0.597 4.597 17 H 0.068 0.932 18 C -0.183 4.183 19 N -0.562 5.562 20 Si 0.776 3.224 21 H -0.202 1.202 22 H -0.204 1.204 23 H -0.194 1.194 24 C -0.072 4.072 25 C 0.002 3.998 26 H 0.067 0.933 27 H 0.090 0.910 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.132 0.868 39 H 0.036 0.964 40 H 0.101 0.899 41 H 0.025 0.975 42 H 0.031 0.969 43 H 0.075 0.925 44 H 0.029 0.971 45 H 0.090 0.910 46 H 0.098 0.902 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.768 16.301 4.516 21.193 hybrid contribution -0.379 -2.275 0.310 2.327 sum -13.147 14.026 4.827 19.820 Atomic orbital electron populations 1.21729 0.94878 1.01434 1.02079 1.21679 0.97082 0.97030 1.00949 1.20930 0.92085 0.96082 0.99496 0.91893 1.21911 1.01958 1.00920 0.95301 1.21473 0.98135 0.98839 0.94099 0.87804 1.21855 1.01610 0.92180 1.04093 1.21343 0.80941 0.77737 0.89671 1.90618 1.50451 1.56715 1.48397 1.48326 1.08198 1.60879 1.16979 1.22202 0.89720 0.96639 0.91768 1.22427 0.98436 0.95627 0.91736 1.62425 1.17644 1.34306 1.11461 1.19428 0.91689 0.86312 0.95154 1.21900 0.98017 0.99341 1.40414 0.93240 1.25724 0.95612 1.00904 0.96049 1.70035 1.12113 1.25960 1.48061 0.85725 0.78528 0.78902 0.79236 1.20224 1.20386 1.19358 1.22183 0.92494 0.95580 0.96993 1.21605 0.98217 0.94053 0.85936 0.93346 0.90955 0.93305 0.92459 0.93983 0.91729 0.92043 0.90870 0.92636 0.88671 0.91348 0.89024 0.86818 0.96383 0.89930 0.97548 0.96875 0.92496 0.97064 0.91017 0.90176 0.89779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.67 71.98 0.70 -2.24 16 2 C -0.13 -3.15 5.15 30.60 0.16 -2.99 16 3 C -0.07 -1.37 1.59 -10.79 -0.02 -1.39 16 4 H 0.06 1.48 7.97 -2.39 -0.02 1.46 16 5 C -0.14 -1.99 8.60 71.98 0.62 -1.37 16 6 C -0.10 -2.16 1.46 -11.54 -0.02 -2.18 16 7 H 0.10 1.95 6.87 -2.39 -0.02 1.94 16 8 C -0.14 -2.09 8.35 71.98 0.60 -1.49 16 9 C 0.51 15.09 6.38 87.66 0.56 15.64 16 10 O -0.58 -21.18 13.71 -3.05 -0.04 -21.22 16 11 N -0.61 -18.06 3.00 -817.04 -2.45 -20.51 16 12 C 0.12 3.01 5.31 86.50 0.46 3.47 16 13 C 0.05 1.65 5.18 86.54 0.45 2.10 16 14 N -0.53 -22.02 4.83 -898.87 -4.34 -26.36 16 15 C 0.20 10.29 5.11 85.56 0.44 10.73 16 16 C -0.56 -30.61 7.76 25.60 0.20 -30.41 16 17 H 0.05 2.73 5.86 -2.91 -0.02 2.71 16 18 C 0.02 0.96 5.46 84.65 0.46 1.42 16 19 N -0.92 -54.18 13.29 21.45 0.28 -53.90 16 20 Si 0.95 43.92 29.54 68.60 2.03 45.95 16 21 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 C 0.06 2.24 5.23 86.38 0.45 2.69 16 25 C 0.13 4.05 6.60 86.35 0.57 4.62 16 26 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.07 1.17 6.56 -2.39 -0.02 1.15 16 28 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.04 1.33 5.87 -2.39 -0.01 1.32 16 31 H 0.06 0.83 6.56 -2.39 -0.02 0.82 16 32 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.07 0.79 6.56 -2.39 -0.02 0.78 16 34 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.09 0.96 6.74 -2.39 -0.02 0.94 16 36 H 0.07 0.98 6.53 -2.38 -0.02 0.96 16 37 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 38 H 0.11 2.16 5.25 -2.39 -0.01 2.15 16 39 H 0.02 0.72 6.70 -2.39 -0.02 0.71 16 40 H 0.08 2.81 8.11 -2.39 -0.02 2.79 16 41 H 0.01 0.36 8.08 -2.38 -0.02 0.34 16 42 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.27 14.78 8.31 -92.70 -0.77 14.01 16 44 H 0.01 0.50 7.01 -2.39 -0.02 0.48 16 45 H 0.07 2.84 8.06 -2.39 -0.02 2.83 16 46 H 0.08 2.72 7.05 -2.39 -0.02 2.70 16 47 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -66.36 350.77 2.03 -64.32 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 0.93 Total: 13.12 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 5.63 Total: -1.40 kcal Atomic # 7 Polarization: -94.26 SS G_CDS: -6.51 Total: -100.77 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.04 Total: -21.22 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -66.36 2.03 -64.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602204549.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.143 kcal (2) G-P(sol) polarization free energy of solvation -66.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds