Wall clock time and date at job start Tue Mar 31 2020 05:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47118 * 2 1 4 4 H 1.09005 * 109.47425 * 55.00395 * 3 2 1 5 5 C 1.52999 * 109.47437 * 295.00325 * 3 2 1 6 6 C 1.53003 * 109.47189 * 175.00105 * 3 2 1 7 7 H 1.09003 * 109.46510 * 60.00354 * 6 3 2 8 8 C 1.53006 * 109.47068 * 180.02562 * 6 3 2 9 9 C 1.50698 * 109.47249 * 300.00368 * 6 3 2 10 10 O 1.21275 * 119.99795 * 333.78545 * 9 6 3 11 11 N 1.34773 * 119.99501 * 153.78574 * 9 6 3 12 12 C 1.47088 * 120.87523 * 184.70616 * 11 9 6 13 13 C 1.53698 * 108.27257 * 128.75756 * 12 11 9 14 14 N 1.46900 * 109.25861 * 54.08178 * 13 12 11 15 15 C 1.46897 * 111.00209 * 172.60505 * 14 13 12 16 16 C 1.50703 * 109.47075 * 294.30466 * 15 14 13 17 17 H 1.07999 * 120.00245 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99785 * 179.97438 * 16 15 14 19 19 N 1.31522 * 119.99858 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00197 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47080 * 89.99842 * 20 18 16 22 22 H 1.48503 * 109.46848 * 209.99931 * 20 18 16 23 23 H 1.48505 * 109.46929 * 329.99783 * 20 18 16 24 24 C 1.46896 * 111.27132 * 296.75916 * 14 13 12 25 25 C 1.47079 * 120.88987 * 4.98926 * 11 9 6 26 26 H 1.08990 * 109.47376 * 59.99379 * 1 2 3 27 27 H 1.08998 * 109.47028 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46634 * 299.99410 * 1 2 3 29 29 H 1.09004 * 109.46634 * 240.00590 * 2 1 3 30 30 H 1.08998 * 109.47422 * 120.00886 * 2 1 3 31 31 H 1.08998 * 109.47258 * 299.99893 * 5 3 2 32 32 H 1.09002 * 109.47319 * 60.00181 * 5 3 2 33 33 H 1.09006 * 109.47307 * 180.02562 * 5 3 2 34 34 H 1.08997 * 109.46893 * 293.77703 * 8 6 3 35 35 H 1.08996 * 109.46926 * 53.78156 * 8 6 3 36 36 H 1.08997 * 109.46534 * 173.78158 * 8 6 3 37 37 H 1.08993 * 109.63069 * 248.52342 * 12 11 9 38 38 H 1.09002 * 109.62936 * 9.10947 * 12 11 9 39 39 H 1.08997 * 109.64840 * 294.07543 * 13 12 11 40 40 H 1.09003 * 109.41924 * 173.94577 * 13 12 11 41 41 H 1.08999 * 109.47023 * 54.30142 * 15 14 13 42 42 H 1.08998 * 109.47390 * 174.30709 * 15 14 13 43 43 H 0.97000 * 120.00074 * 179.97438 * 19 18 16 44 44 H 1.09005 * 109.48790 * 303.14438 * 24 14 13 45 45 H 1.08993 * 109.51767 * 183.07692 * 24 14 13 46 46 H 1.09005 * 109.62128 * 350.89315 * 25 11 9 47 47 H 1.09000 * 109.62909 * 111.47304 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5649 1.4443 0.1257 7 1 3.9994 0.9053 -0.7162 8 6 4.0748 2.8869 0.1263 9 6 3.9636 0.7705 1.4133 10 8 3.1976 0.7575 2.3534 11 7 5.1715 0.1823 1.5200 12 6 5.5411 -0.5688 2.7294 13 6 6.0568 -1.9514 2.2993 14 7 7.1380 -1.7818 1.3194 15 6 7.7774 -3.0684 1.0130 16 6 8.4764 -3.5875 2.2431 17 1 8.4489 -3.0184 3.1605 18 6 9.1511 -4.7890 2.1971 19 7 9.7616 -5.2418 3.2705 20 14 9.1994 -5.7731 0.6101 21 1 10.3807 -5.3631 -0.1908 22 1 9.2950 -7.2206 0.9280 23 1 7.9608 -5.5180 -0.1684 24 6 6.6510 -1.1313 0.0957 25 6 6.1574 0.2796 0.4329 26 1 -0.3633 0.5139 -0.8898 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5140 0.8899 31 1 2.0698 1.5876 -2.1491 32 1 0.5489 2.1253 -1.3968 33 1 1.9990 3.1541 -1.3075 34 1 3.8840 3.3401 -0.8464 35 1 3.5575 3.4547 0.8996 36 1 5.1463 2.8933 0.3263 37 1 6.3236 -0.0341 3.2678 38 1 4.6666 -0.6857 3.3695 39 1 5.2443 -2.5219 1.8494 40 1 6.4365 -2.4840 3.1713 41 1 7.0191 -3.7847 0.6965 42 1 8.5044 -2.9314 0.2126 43 1 10.2360 -6.0873 3.2383 44 1 5.8302 -1.7133 -0.3236 45 1 7.4611 -1.0693 -0.6309 46 1 5.6904 0.7240 -0.4461 47 1 6.9979 0.8944 0.7548 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602204551.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:06 Heat of formation + Delta-G solvation = -44.895337 kcal Electronic energy + Delta-G solvation = -23538.782568 eV Core-core repulsion = 20335.001645 eV Total energy + Delta-G solvation = -3203.780923 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.41457 -38.02712 -36.52941 -34.53604 -32.69550 -32.27246 -30.77455 -29.06321 -28.43130 -26.22432 -25.51504 -23.64614 -22.71100 -21.63406 -20.79961 -19.75712 -18.59874 -17.26200 -16.80363 -15.99561 -15.29198 -15.18768 -14.64312 -14.59417 -14.42787 -14.11324 -13.88506 -13.58225 -13.49046 -13.08515 -12.95519 -12.56265 -12.42690 -12.31198 -12.16205 -11.89055 -11.83028 -11.59730 -11.54286 -11.24727 -10.99777 -10.81203 -10.68695 -10.64596 -10.58227 -10.54055 -10.34602 -9.94299 -9.49433 -9.32260 -8.61954 -8.47901 -7.48575 -6.10048 -4.08143 2.74572 3.11448 3.24336 3.32359 3.33305 4.37167 4.39585 4.48679 4.57104 4.69029 4.91625 5.05331 5.15563 5.19248 5.21508 5.28807 5.30650 5.33518 5.37573 5.43787 5.46760 5.56305 5.63917 5.68801 5.74618 5.78464 5.84552 5.85095 5.93044 5.94909 6.01473 6.06240 6.07257 6.29110 6.29883 6.35526 6.46877 6.63778 6.80841 6.91086 7.50805 7.54748 7.80173 7.93191 8.30512 8.58546 8.97637 9.51130 11.02858 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025735 B = 0.003786 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.747901 B = 7394.596422 C = 7556.196576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.073 4.073 4 H 0.081 0.919 5 C -0.149 4.149 6 C -0.109 4.109 7 H 0.091 0.909 8 C -0.142 4.142 9 C 0.519 3.481 10 O -0.546 6.546 11 N -0.609 5.609 12 C 0.115 3.885 13 C 0.051 3.949 14 N -0.526 5.526 15 C 0.163 3.837 16 C -0.512 4.512 17 H 0.082 0.918 18 C 0.069 3.931 19 N -0.898 5.898 20 Si 0.875 3.125 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.269 1.269 24 C 0.036 3.964 25 C 0.111 3.889 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.024 0.976 40 H 0.102 0.898 41 H -0.012 1.012 42 H 0.025 0.975 43 H 0.264 0.736 44 H 0.027 0.973 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.915 14.596 -10.369 22.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.092 4.092 4 H 0.099 0.901 5 C -0.206 4.206 6 C -0.130 4.130 7 H 0.109 0.891 8 C -0.200 4.200 9 C 0.307 3.693 10 O -0.424 6.424 11 N -0.342 5.342 12 C -0.007 4.007 13 C -0.077 4.077 14 N -0.251 5.251 15 C 0.037 3.963 16 C -0.550 4.550 17 H 0.100 0.900 18 C -0.132 4.132 19 N -0.537 5.537 20 Si 0.702 3.298 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.194 1.194 24 C -0.093 4.093 25 C -0.012 4.012 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.043 0.957 40 H 0.120 0.880 41 H 0.006 0.994 42 H 0.043 0.957 43 H 0.074 0.926 44 H 0.045 0.955 45 H 0.099 0.901 46 H 0.101 0.899 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.848 14.724 -9.585 22.370 hybrid contribution -0.245 -1.319 -1.251 1.835 sum -14.093 13.405 -10.836 22.265 Atomic orbital electron populations 1.21763 0.95839 1.01406 1.01579 1.21622 0.96127 0.96193 1.02217 1.21004 0.92473 0.96979 0.98751 0.90100 1.21937 1.01481 1.00387 0.96818 1.21426 0.97715 0.97699 0.96179 0.89101 1.21779 1.01359 0.94038 1.02784 1.20572 0.80817 0.78229 0.89634 1.90654 1.51461 1.59927 1.40399 1.48275 1.14570 1.52507 1.18867 1.21929 1.00278 0.92083 0.86417 1.22459 0.92276 0.94697 0.98307 1.61891 1.27705 1.26117 1.09342 1.20175 0.93415 0.84759 0.97972 1.21010 1.31906 1.05019 0.97092 0.90047 1.24899 0.95016 0.97243 0.96092 1.69892 1.34575 1.20993 1.28250 0.86868 0.78864 0.79669 0.84372 1.20105 1.21160 1.19370 1.22453 0.98702 0.94185 0.93975 1.21943 0.91761 0.97913 0.89615 0.92797 0.93019 0.92712 0.92499 0.91256 0.92732 0.92260 0.92409 0.91281 0.91911 0.92100 0.90858 0.89379 0.95730 0.87996 0.99386 0.95652 0.92594 0.95476 0.90067 0.89922 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.67 37.16 0.36 -1.07 16 2 C -0.12 -1.38 5.19 -26.73 -0.14 -1.52 16 3 C -0.07 -0.74 1.61 -90.62 -0.15 -0.89 16 4 H 0.08 0.94 7.87 -51.93 -0.41 0.53 16 5 C -0.15 -1.14 8.60 37.16 0.32 -0.83 16 6 C -0.11 -1.15 1.47 -91.77 -0.13 -1.28 16 7 H 0.09 0.87 6.38 -51.93 -0.33 0.53 16 8 C -0.14 -1.23 8.47 37.16 0.31 -0.92 16 9 C 0.52 7.44 5.89 -10.99 -0.06 7.38 16 10 O -0.55 -9.56 14.61 5.56 0.08 -9.48 16 11 N -0.61 -8.90 3.00 -172.18 -0.52 -9.42 16 12 C 0.12 1.89 6.61 -3.36 -0.02 1.86 16 13 C 0.05 0.97 5.47 -3.46 -0.02 0.95 16 14 N -0.53 -10.44 4.62 -235.47 -1.09 -11.53 16 15 C 0.16 3.81 3.79 -4.98 -0.02 3.80 16 16 C -0.51 -14.15 8.96 -34.44 -0.31 -14.46 16 17 H 0.08 2.44 7.37 -52.49 -0.39 2.06 16 18 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 19 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 20 Si 0.87 21.08 27.47 -169.99 -4.67 16.41 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.27 -6.26 6.54 56.52 0.37 -5.90 16 24 C 0.04 0.57 5.62 -3.71 -0.02 0.54 16 25 C 0.11 1.41 6.06 -3.61 -0.02 1.38 16 26 H 0.05 0.44 6.56 -51.93 -0.34 0.10 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.97 6.39 -51.93 -0.33 0.64 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.43 6.57 -51.93 -0.34 0.09 16 33 H 0.06 0.39 6.57 -51.93 -0.34 0.05 16 34 H 0.07 0.46 6.78 -51.93 -0.35 0.11 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.09 1.46 7.09 -51.93 -0.37 1.09 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.10 2.14 6.67 -51.93 -0.35 1.79 16 41 H -0.01 -0.28 7.18 -51.93 -0.37 -0.65 16 42 H 0.03 0.59 7.40 -51.93 -0.38 0.21 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.08 1.17 7.99 -51.93 -0.41 0.75 16 46 H 0.08 0.80 5.34 -51.93 -0.28 0.52 16 47 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 352.71 15.07 5.32 5.32 Total: -1.00 -31.23 352.71 -8.47 -39.70 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -8.37 Total: -1.52 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 0.00 Total: -3.16 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: -0.83 Total: -47.27 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.08 Total: -9.48 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.23 -8.47 -39.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602204551.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.197 kcal (2) G-P(sol) polarization free energy of solvation -31.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds