Wall clock time and date at job start Tue Mar 31 2020 05:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47462 * 2 1 4 4 H 1.09008 * 109.47056 * 54.99492 * 3 2 1 5 5 C 1.52998 * 109.46920 * 295.00068 * 3 2 1 6 6 C 1.52997 * 109.47379 * 175.00014 * 3 2 1 7 7 H 1.08995 * 109.47234 * 59.99792 * 6 3 2 8 8 C 1.53005 * 109.47052 * 299.99663 * 6 3 2 9 9 C 1.50701 * 109.47116 * 179.97438 * 6 3 2 10 10 O 1.21278 * 120.00048 * 8.99214 * 9 6 3 11 11 N 1.34779 * 119.99861 * 188.98505 * 9 6 3 12 12 C 1.47081 * 120.88362 * 354.11713 * 11 9 6 13 13 C 1.53238 * 108.52604 * 129.08259 * 12 11 9 14 14 N 1.46901 * 109.33633 * 53.82948 * 13 12 11 15 15 C 1.46896 * 110.99513 * 172.74835 * 14 13 12 16 16 C 1.50704 * 109.47478 * 59.81232 * 15 14 13 17 17 H 1.07998 * 119.99420 * 5.50456 * 16 15 14 18 18 C 1.37869 * 120.00140 * 185.50193 * 16 15 14 19 19 N 1.31517 * 120.00150 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00355 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46905 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47539 * 120.00036 * 20 18 16 23 23 H 1.48495 * 109.47581 * 240.00475 * 20 18 16 24 24 C 1.46901 * 111.26991 * 296.89233 * 14 13 12 25 25 C 1.47082 * 120.88081 * 174.38697 * 11 9 6 26 26 H 1.09000 * 109.47249 * 60.00185 * 1 2 3 27 27 H 1.08999 * 109.47079 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47180 * 300.00298 * 1 2 3 29 29 H 1.09002 * 109.47180 * 239.99702 * 2 1 3 30 30 H 1.09003 * 109.46898 * 120.00181 * 2 1 3 31 31 H 1.09003 * 109.47194 * 299.99825 * 5 3 2 32 32 H 1.09005 * 109.47329 * 60.00067 * 5 3 2 33 33 H 1.09009 * 109.47138 * 179.97438 * 5 3 2 34 34 H 1.08998 * 109.46611 * 53.35100 * 8 6 3 35 35 H 1.08998 * 109.47003 * 173.35273 * 8 6 3 36 36 H 1.08995 * 109.47266 * 293.35495 * 8 6 3 37 37 H 1.09004 * 109.62455 * 248.80003 * 12 11 9 38 38 H 1.09005 * 109.62593 * 9.36948 * 12 11 9 39 39 H 1.09003 * 109.49023 * 293.87280 * 13 12 11 40 40 H 1.08997 * 109.49139 * 173.78597 * 13 12 11 41 41 H 1.09010 * 109.46833 * 179.81063 * 15 14 13 42 42 H 1.08995 * 109.47570 * 299.80923 * 15 14 13 43 43 H 0.96999 * 120.00144 * 179.97438 * 19 18 16 44 44 H 1.08998 * 109.49543 * 303.15091 * 24 14 13 45 45 H 1.08996 * 109.49369 * 183.06577 * 24 14 13 46 46 H 1.09001 * 109.62409 * 350.62758 * 25 11 9 47 47 H 1.09005 * 109.62404 * 111.20593 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1264 -1.3073 6 6 3.5649 1.4442 0.1257 7 1 3.9995 0.9052 -0.7160 8 6 3.9696 0.7602 1.4332 9 6 4.0673 2.8650 0.1251 10 8 3.2816 3.7861 0.1978 11 7 5.3897 3.1121 0.0438 12 6 6.3669 2.0136 0.0843 13 6 7.3211 2.1667 -1.1049 14 7 7.9023 3.5157 -1.0916 15 6 8.9504 3.6474 -2.1124 16 6 8.3612 3.3843 -3.4743 17 1 7.2976 3.2313 -3.5820 18 6 9.1800 3.3390 -4.5826 19 7 10.4753 3.5248 -4.4513 20 14 8.4497 3.0136 -6.2708 21 1 6.9798 2.8403 -6.1492 22 1 8.7398 4.1627 -7.1656 23 1 9.0485 1.7797 -6.8399 24 6 6.8672 4.5437 -1.2644 25 6 5.8943 4.4879 -0.0817 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.0699 1.5874 -2.1492 32 1 0.5490 2.1252 -1.3969 33 1 1.9983 3.1543 -1.3072 34 1 3.5076 -0.2256 1.4855 35 1 5.0540 0.6557 1.4679 36 1 3.6354 1.3633 2.2773 37 1 6.9317 2.0601 1.0155 38 1 5.8467 1.0581 0.0158 39 1 6.7713 2.0166 -2.0340 40 1 8.1178 1.4267 -1.0295 41 1 9.3614 4.6566 -2.0831 42 1 9.7434 2.9263 -1.9141 43 1 11.0515 3.4926 -5.2310 44 1 6.3237 4.3604 -2.1913 45 1 7.3346 5.5274 -1.3047 46 1 5.0617 5.1684 -0.2601 47 1 6.4137 4.7723 0.8334 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602204553.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:09 Heat of formation + Delta-G solvation = -46.258750 kcal Electronic energy + Delta-G solvation = -23693.773565 eV Core-core repulsion = 20489.933520 eV Total energy + Delta-G solvation = -3203.840045 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.34756 -37.93092 -36.51902 -34.52245 -32.63289 -32.05270 -30.47924 -29.30553 -28.13280 -25.57455 -24.56367 -24.03480 -23.06387 -22.11446 -20.65674 -19.62641 -18.54573 -17.03641 -16.35724 -15.88930 -15.16035 -15.11432 -14.83306 -14.47612 -14.35493 -14.03921 -13.78613 -13.67452 -13.33287 -13.13251 -12.77821 -12.34958 -12.24257 -11.91453 -11.87380 -11.76659 -11.67740 -11.32160 -11.16692 -11.02791 -10.98796 -10.77084 -10.67538 -10.61938 -10.57534 -10.48475 -10.26645 -9.91984 -9.69024 -9.31807 -8.50015 -8.36837 -7.28654 -6.09547 -4.19069 2.83202 3.21862 3.22282 3.30638 3.34006 4.35192 4.49583 4.57768 4.76435 4.86703 4.97172 5.11307 5.18014 5.21013 5.31245 5.38549 5.45893 5.48059 5.50677 5.61104 5.62238 5.68716 5.77168 5.78584 5.86741 5.88805 5.91298 5.94870 5.97830 6.09445 6.13416 6.17443 6.37654 6.40131 6.50210 6.58831 6.68744 6.79520 7.17348 7.44838 7.65334 7.82801 7.94075 8.16106 8.21030 8.39779 8.91083 9.48556 10.95563 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019244 B = 0.004367 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.651446 B = 6410.315263 C = 7071.718732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.069 4.069 4 H 0.076 0.924 5 C -0.156 4.156 6 C -0.108 4.108 7 H 0.094 0.906 8 C -0.153 4.153 9 C 0.520 3.480 10 O -0.548 6.548 11 N -0.606 5.606 12 C 0.104 3.896 13 C 0.049 3.951 14 N -0.540 5.540 15 C 0.187 3.813 16 C -0.551 4.551 17 H 0.056 0.944 18 C 0.066 3.934 19 N -0.889 5.889 20 Si 0.888 3.112 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.050 3.950 25 C 0.116 3.884 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.043 0.957 40 H 0.078 0.922 41 H 0.029 0.971 42 H 0.036 0.964 43 H 0.262 0.738 44 H 0.041 0.959 45 H 0.077 0.923 46 H 0.085 0.915 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.839 -6.996 10.569 18.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.088 4.088 4 H 0.095 0.905 5 C -0.214 4.214 6 C -0.129 4.129 7 H 0.112 0.888 8 C -0.210 4.210 9 C 0.308 3.692 10 O -0.427 6.427 11 N -0.339 5.339 12 C -0.019 4.019 13 C -0.080 4.080 14 N -0.265 5.265 15 C 0.062 3.938 16 C -0.590 4.590 17 H 0.074 0.926 18 C -0.137 4.137 19 N -0.528 5.528 20 Si 0.716 3.284 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.080 4.080 25 C -0.007 4.007 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.062 0.938 40 H 0.097 0.903 41 H 0.047 0.953 42 H 0.055 0.945 43 H 0.072 0.928 44 H 0.059 0.941 45 H 0.095 0.905 46 H 0.103 0.897 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.847 -6.415 10.965 18.792 hybrid contribution -0.439 -0.335 -2.007 2.081 sum -14.287 -6.750 8.958 18.164 Atomic orbital electron populations 1.21804 0.95909 1.01252 1.02002 1.21687 0.95950 0.96354 1.02068 1.20918 0.92412 0.95820 0.99625 0.90543 1.22016 1.00940 1.02332 0.96062 1.21366 0.97443 0.93717 1.00416 0.88796 1.22028 1.02269 1.00859 0.95863 1.20565 0.81697 0.91284 0.75637 1.90613 1.54862 1.46636 1.50559 1.48184 1.05441 1.08370 1.71855 1.22174 0.90404 0.89244 1.00029 1.22242 0.96908 0.93110 0.95772 1.62490 1.11974 1.01417 1.50575 1.19773 0.89398 0.97799 0.86854 1.21763 0.94062 1.49853 0.93318 0.92583 1.24950 0.94733 0.94884 0.99103 1.69946 1.03303 1.49373 1.30172 0.86605 0.79333 0.77996 0.84494 1.19903 1.20866 1.20874 1.22253 0.93024 0.96983 0.95712 1.21804 0.97249 0.82506 0.99130 0.92455 0.93019 0.92841 0.91976 0.91610 0.93390 0.92820 0.90710 0.91116 0.91343 0.92221 0.91075 0.89738 0.93829 0.90346 0.95335 0.94539 0.92790 0.94094 0.90450 0.89681 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.67 37.16 0.36 -0.90 16 2 C -0.12 -1.10 5.20 -26.73 -0.14 -1.24 16 3 C -0.07 -0.77 1.59 -90.63 -0.14 -0.92 16 4 H 0.08 0.94 8.00 -51.92 -0.42 0.53 16 5 C -0.16 -1.95 8.63 37.16 0.32 -1.63 16 6 C -0.11 -1.27 1.48 -91.77 -0.14 -1.40 16 7 H 0.09 1.08 7.46 -51.93 -0.39 0.69 16 8 C -0.15 -1.44 8.62 37.16 0.32 -1.12 16 9 C 0.52 7.95 6.56 -10.98 -0.07 7.88 16 10 O -0.55 -9.88 13.53 5.56 0.08 -9.81 16 11 N -0.61 -9.37 3.01 -172.45 -0.52 -9.89 16 12 C 0.10 1.46 5.41 -3.60 -0.02 1.44 16 13 C 0.05 0.88 5.16 -3.70 -0.02 0.86 16 14 N -0.54 -10.99 4.83 -235.76 -1.14 -12.13 16 15 C 0.19 4.64 5.11 -4.98 -0.03 4.61 16 16 C -0.55 -14.73 7.75 -34.44 -0.27 -15.00 16 17 H 0.06 1.51 5.88 -52.49 -0.31 1.20 16 18 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 19 N -0.89 -25.62 13.29 55.43 0.74 -24.89 16 20 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C 0.05 0.94 5.24 -3.70 -0.02 0.92 16 25 C 0.12 1.89 6.58 -3.60 -0.02 1.87 16 26 H 0.06 0.49 6.57 -51.93 -0.34 0.15 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.52 6.04 -51.93 -0.31 0.21 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.59 6.57 -51.93 -0.34 0.25 16 33 H 0.07 1.14 5.85 -51.92 -0.30 0.83 16 34 H 0.07 0.54 6.00 -51.93 -0.31 0.23 16 35 H 0.07 0.61 5.54 -51.93 -0.29 0.32 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.08 0.97 4.54 -51.93 -0.24 0.73 16 39 H 0.04 0.88 6.82 -51.93 -0.35 0.52 16 40 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 41 H 0.03 0.76 8.08 -51.92 -0.42 0.34 16 42 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.04 0.87 6.89 -51.93 -0.36 0.52 16 45 H 0.08 1.46 8.06 -51.93 -0.42 1.04 16 46 H 0.08 1.41 7.11 -51.93 -0.37 1.04 16 47 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 348.89 15.07 5.26 5.26 Total: -1.00 -29.77 348.89 -8.67 -38.44 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -8.10 Total: -0.22 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 0.04 Total: -2.91 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: -0.92 Total: -46.91 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.08 Total: -9.81 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.77 -8.67 -38.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602204553.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.816 kcal (2) G-P(sol) polarization free energy of solvation -29.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds