Wall clock time and date at job start Tue Mar 31 2020 06:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42892 * 114.00084 * 2 1 4 4 C 1.52999 * 109.46981 * 179.97438 * 3 2 1 5 5 C 1.53009 * 109.47103 * 299.99687 * 3 2 1 6 6 N 1.46901 * 109.46960 * 300.00389 * 5 3 2 7 7 C 1.46902 * 110.99420 * 180.02562 * 6 5 3 8 8 C 1.53039 * 109.46084 * 275.06254 * 7 6 5 9 9 C 1.53186 * 109.31429 * 178.61882 * 8 7 6 10 10 N 1.46922 * 108.77663 * 54.63411 * 9 8 7 11 11 C 1.36942 * 120.63294 * 126.40961 * 10 9 8 12 12 H 1.08008 * 119.99815 * 331.83188 * 11 10 9 13 13 C 1.38815 * 120.00082 * 151.82081 * 11 10 9 14 14 N 1.31614 * 120.00043 * 343.08657 * 13 11 10 15 15 Si 1.86800 * 119.99687 * 163.08375 * 13 11 10 16 16 H 1.48507 * 109.47176 * 60.00545 * 15 13 11 17 17 H 1.48498 * 109.46944 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47270 * 300.00472 * 15 13 11 19 19 C 1.46923 * 118.74288 * 306.39740 * 10 9 8 20 20 C 1.53045 * 109.45436 * 154.99806 * 7 6 5 21 21 C 1.53000 * 109.47236 * 59.99691 * 3 2 1 22 22 C 1.53007 * 117.49671 * 133.62201 * 21 3 2 23 23 C 1.52993 * 117.49672 * 65.00198 * 21 3 2 24 24 H 1.08999 * 109.47410 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47465 * 300.00208 * 1 2 3 26 26 H 1.09005 * 109.47173 * 60.00532 * 1 2 3 27 27 H 1.08998 * 109.47121 * 60.00028 * 4 3 2 28 28 H 1.09009 * 109.47095 * 179.97438 * 4 3 2 29 29 H 1.08999 * 109.47216 * 299.99688 * 4 3 2 30 30 H 1.08998 * 109.46650 * 60.00430 * 5 3 2 31 31 H 1.09001 * 109.46936 * 180.02562 * 5 3 2 32 32 H 1.00901 * 110.99447 * 303.94900 * 6 5 3 33 33 H 1.09001 * 109.46182 * 35.02750 * 7 6 5 34 34 H 1.09001 * 109.49516 * 298.57408 * 8 7 6 35 35 H 1.09000 * 109.49286 * 58.66666 * 8 7 6 36 36 H 1.09000 * 109.58333 * 294.85009 * 9 8 7 37 37 H 1.08995 * 109.70517 * 174.49149 * 9 8 7 38 38 H 0.97005 * 120.00090 * 179.97438 * 14 13 11 39 39 H 1.09005 * 109.58281 * 293.81931 * 19 10 9 40 40 H 1.09001 * 109.70973 * 173.46683 * 19 10 9 41 41 H 1.08998 * 109.49835 * 301.33445 * 20 7 6 42 42 H 1.08997 * 109.49996 * 61.39954 * 20 7 6 43 43 H 1.08999 * 115.55180 * 279.33099 * 21 3 2 44 44 H 1.09002 * 117.49852 * 0.02562 * 22 21 3 45 45 H 1.08997 * 117.49539 * 145.01798 * 22 21 3 46 46 H 1.09000 * 117.49826 * 214.97799 * 23 21 3 47 47 H 1.08999 * 117.50177 * 0.02562 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 6 1.5588 2.0647 -1.2494 6 7 1.9923 1.3356 -2.4487 7 6 1.5758 2.0372 -3.6704 8 6 0.1415 1.6377 -4.0240 9 6 -0.3014 2.3971 -5.2785 10 7 0.6746 2.1519 -6.3489 11 6 0.2680 1.6856 -7.5706 12 1 -0.6231 1.0802 -7.6482 13 6 1.0008 1.9911 -8.7092 14 7 1.8725 2.9770 -8.6860 15 14 0.7499 1.0029 -10.2745 16 1 -0.6634 1.1231 -10.7145 17 1 1.6459 1.5241 -11.3378 18 1 1.0680 -0.4242 -10.0152 19 6 2.0953 2.4168 -6.0840 20 6 2.5113 1.6571 -4.8205 21 6 1.5587 2.0647 1.2492 22 6 2.6292 2.8122 2.0470 23 6 2.0161 1.5270 2.6065 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 3.8574 0.6434 -0.8891 28 1 3.9788 2.1803 0.0002 29 1 3.8567 0.6438 0.8909 30 1 0.4722 2.1508 -1.2493 31 1 2.0025 3.0603 -1.2496 32 1 2.9901 1.1863 -2.4401 33 1 1.6225 3.1135 -3.5048 34 1 0.0989 0.5652 -4.2140 35 1 -0.5206 1.8873 -3.1949 36 1 -0.3463 3.4646 -5.0625 37 1 -1.2842 2.0462 -5.5928 38 1 2.3849 3.1903 -9.4815 39 1 2.2458 3.4859 -5.9337 40 1 2.6960 2.0785 -6.9283 41 1 3.5360 1.9206 -4.5582 42 1 2.4469 0.5844 -5.0026 43 1 0.5669 2.5133 1.1938 44 1 3.6550 2.7633 1.6816 45 1 2.3417 3.7529 2.5164 46 1 1.3253 1.6221 3.4443 47 1 2.6390 0.6325 2.6096 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602538558.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:15 Heat of formation + Delta-G solvation = 3.063991 kcal Electronic energy + Delta-G solvation = -23519.746798 eV Core-core repulsion = 20318.045547 eV Total energy + Delta-G solvation = -3201.701250 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.92037 -37.83098 -36.22548 -34.92293 -32.46285 -30.93734 -29.91819 -28.88399 -26.77200 -26.06054 -24.57839 -22.93877 -22.50983 -21.98922 -21.01897 -19.36072 -18.89496 -16.89398 -16.80104 -16.17191 -15.61069 -15.03291 -14.84480 -14.53217 -14.11705 -13.87270 -13.70202 -13.44556 -13.06912 -12.88755 -12.84733 -12.34094 -12.14071 -12.10432 -11.71245 -11.62409 -11.42857 -11.32671 -10.99552 -10.73571 -10.68124 -10.66766 -10.57599 -10.31437 -10.25292 -10.16100 -9.89534 -9.61234 -9.48294 -9.26274 -8.43106 -8.06268 -6.62917 -5.75350 -3.17322 3.40433 3.41414 3.46619 3.48662 3.96077 4.21096 4.53337 4.61511 4.62975 4.75786 4.85927 4.99181 5.14594 5.37116 5.39205 5.43033 5.47421 5.50194 5.54795 5.58703 5.61187 5.63529 5.71775 5.75921 5.80222 5.89208 5.90743 5.96468 5.99046 6.16306 6.20006 6.38810 6.53832 6.58332 6.67742 6.71764 6.86539 7.08857 7.28755 7.41178 7.43201 7.67990 7.72158 7.83299 8.49271 9.25391 9.89062 10.46249 11.33367 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037624 B = 0.003413 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.023653 B = 8202.208501 C = 8420.144526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.361 6.361 3 C 0.150 3.850 4 C -0.146 4.146 5 C 0.039 3.961 6 N -0.678 5.678 7 C 0.096 3.904 8 C -0.115 4.115 9 C 0.145 3.855 10 N -0.591 5.591 11 C -0.251 4.251 12 H 0.065 0.935 13 C 0.001 3.999 14 N -0.905 5.905 15 Si 0.903 3.097 16 H -0.283 1.283 17 H -0.291 1.291 18 H -0.284 1.284 19 C 0.175 3.825 20 C -0.140 4.140 21 C -0.182 4.182 22 C -0.178 4.178 23 C -0.165 4.165 24 H 0.079 0.921 25 H 0.034 0.966 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.034 0.966 32 H 0.336 0.664 33 H 0.033 0.967 34 H 0.064 0.936 35 H 0.042 0.958 36 H 0.013 0.987 37 H 0.053 0.947 38 H 0.254 0.746 39 H 0.015 0.985 40 H 0.088 0.912 41 H 0.044 0.956 42 H 0.063 0.937 43 H 0.103 0.897 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.475 -1.460 20.934 21.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.279 6.279 3 C 0.110 3.890 4 C -0.203 4.203 5 C -0.091 4.091 6 N -0.310 5.310 7 C -0.013 4.013 8 C -0.155 4.155 9 C 0.018 3.982 10 N -0.314 5.314 11 C -0.381 4.381 12 H 0.082 0.918 13 C -0.197 4.197 14 N -0.549 5.549 15 Si 0.732 3.268 16 H -0.209 1.209 17 H -0.217 1.217 18 H -0.210 1.210 19 C 0.048 3.952 20 C -0.180 4.180 21 C -0.201 4.201 22 C -0.215 4.215 23 C -0.202 4.202 24 H 0.097 0.903 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.052 0.948 32 H 0.155 0.845 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.031 0.969 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.033 0.967 40 H 0.106 0.894 41 H 0.063 0.937 42 H 0.082 0.918 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.111 0.889 46 H 0.109 0.891 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.142 -1.983 20.770 20.896 hybrid contribution 0.201 0.647 -0.767 1.023 sum 1.342 -1.336 20.003 20.093 Atomic orbital electron populations 1.22651 0.81692 1.02202 0.99785 1.87947 1.19367 1.25977 1.94633 1.20896 0.93724 0.83355 0.90993 1.21895 0.92902 1.02206 1.03274 1.22482 1.01167 0.94942 0.90495 1.60563 1.19693 1.49945 1.00765 1.21477 0.96560 0.94676 0.88551 1.21984 0.94443 1.01455 0.97577 1.20920 0.93336 0.95619 0.88334 1.44031 1.01059 1.76565 1.09760 1.19164 1.10736 1.24561 0.83594 0.91764 1.25039 1.00264 0.96932 0.97469 1.70022 1.28414 1.27851 1.28661 0.86365 0.77501 0.80011 0.82873 1.20914 1.21676 1.21003 1.20723 0.85785 0.95038 0.93642 1.22393 0.96263 1.02135 0.97204 1.22874 0.99672 1.04319 0.93274 1.23110 0.98570 0.96079 1.03714 1.22849 1.03700 0.97864 0.95833 0.90290 0.94767 0.93302 0.91048 0.91094 0.91765 0.90808 0.94792 0.84465 0.94928 0.91742 0.93928 0.96922 0.92797 0.93645 0.96708 0.89379 0.93744 0.91801 0.87909 0.88007 0.88946 0.89057 0.88401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.31 101.05 1.04 1.42 16 2 O -0.36 -4.69 10.19 -35.23 -0.36 -5.05 16 3 C 0.15 1.68 0.72 -90.62 -0.06 1.61 16 4 C -0.15 -1.46 7.17 37.16 0.27 -1.19 16 5 C 0.04 0.50 4.10 -3.82 -0.02 0.48 16 6 N -0.68 -10.04 6.15 -106.67 -0.66 -10.69 16 7 C 0.10 1.68 2.46 -67.67 -0.17 1.52 16 8 C -0.11 -2.12 5.59 -26.62 -0.15 -2.27 16 9 C 0.14 3.14 6.52 -3.72 -0.02 3.12 16 10 N -0.59 -15.17 2.99 -172.32 -0.52 -15.69 16 11 C -0.25 -7.02 9.58 -15.06 -0.14 -7.17 16 12 H 0.06 1.77 7.89 -52.48 -0.41 1.35 16 13 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 14 N -0.90 -26.55 11.19 55.49 0.62 -25.93 16 15 Si 0.90 21.97 29.59 -169.99 -5.03 16.95 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 19 C 0.17 4.23 5.30 -3.71 -0.02 4.21 16 20 C -0.14 -2.74 5.36 -26.61 -0.14 -2.88 16 21 C -0.18 -1.74 4.00 -90.62 -0.36 -2.10 16 22 C -0.18 -1.44 9.65 -26.73 -0.26 -1.70 16 23 C -0.17 -1.40 9.85 -26.74 -0.26 -1.66 16 24 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.03 0.33 6.99 -51.93 -0.36 -0.03 16 26 H 0.05 0.60 6.42 -51.93 -0.33 0.26 16 27 H 0.07 0.77 6.57 -51.93 -0.34 0.43 16 28 H 0.07 0.62 6.74 -51.92 -0.35 0.27 16 29 H 0.06 0.60 6.96 -51.93 -0.36 0.24 16 30 H 0.07 0.98 5.81 -51.93 -0.30 0.67 16 31 H 0.03 0.43 8.05 -51.93 -0.42 0.01 16 32 H 0.34 4.72 6.37 -39.29 -0.25 4.47 16 33 H 0.03 0.59 7.80 -51.93 -0.40 0.19 16 34 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.04 0.70 7.42 -51.93 -0.39 0.32 16 36 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.05 1.15 7.93 -51.93 -0.41 0.73 16 38 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.09 2.38 6.07 -51.93 -0.31 2.07 16 41 H 0.04 0.77 8.10 -51.93 -0.42 0.35 16 42 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.10 0.97 7.90 -51.93 -0.41 0.56 16 44 H 0.10 0.78 5.89 -51.93 -0.31 0.48 16 45 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.10 0.86 7.29 -51.93 -0.38 0.48 16 LS Contribution 352.45 15.07 5.31 5.31 Total: -1.00 -29.84 352.45 -9.27 -39.11 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -8.26 Total: 2.65 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -0.39 Total: -6.66 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: -0.55 Total: -52.31 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.36 Total: -5.05 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.84 -9.27 -39.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602538558.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.177 kcal (2) G-P(sol) polarization free energy of solvation -29.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds