Wall clock time and date at job start Tue Mar 31 2020 05:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47054 * 2 1 4 4 H 1.09000 * 109.38234 * 182.16148 * 3 2 1 5 5 C 1.50262 * 109.38449 * 62.47458 * 3 2 1 6 6 O 1.21284 * 118.62454 * 42.64495 * 5 3 2 7 7 N 1.33712 * 122.75082 * 222.65830 * 5 3 2 8 8 C 1.46496 * 118.53788 * 181.64119 * 7 5 3 9 9 C 1.53000 * 109.46804 * 90.00341 * 8 7 5 10 10 C 1.46013 * 122.92592 * 1.67260 * 7 5 3 11 11 C 1.52996 * 110.03858 * 341.83607 * 10 7 5 12 12 N 1.46902 * 109.38916 * 301.95804 * 3 2 1 13 13 C 1.46901 * 110.99776 * 293.81889 * 12 3 2 14 14 C 1.53003 * 109.47108 * 164.36697 * 13 12 3 15 15 H 1.08999 * 109.46448 * 55.00161 * 14 13 12 16 16 C 1.52996 * 109.47103 * 295.00252 * 14 13 12 17 17 C 1.53000 * 109.47091 * 175.00129 * 14 13 12 18 18 C 1.50700 * 109.46784 * 185.00452 * 17 14 13 19 19 H 1.07999 * 120.00288 * 359.97438 * 18 17 14 20 20 C 1.37887 * 119.99610 * 180.02562 * 18 17 14 21 21 N 1.31511 * 119.99852 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99805 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46928 * 59.99996 * 22 20 18 24 24 H 1.48493 * 109.46792 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47177 * 300.00164 * 22 20 18 26 26 H 1.08996 * 109.46966 * 304.92994 * 1 2 3 27 27 H 1.08998 * 109.46857 * 64.92481 * 1 2 3 28 28 H 1.08997 * 109.47547 * 184.92661 * 1 2 3 29 29 H 1.09002 * 109.47116 * 240.00043 * 2 1 3 30 30 H 1.09003 * 109.46989 * 120.00006 * 2 1 3 31 31 H 1.09001 * 109.47362 * 210.00285 * 8 7 5 32 32 H 1.08998 * 109.47296 * 330.00921 * 8 7 5 33 33 H 1.08994 * 109.47449 * 299.99843 * 9 8 7 34 34 H 1.09000 * 109.46911 * 60.00741 * 9 8 7 35 35 H 1.09001 * 109.46975 * 180.02562 * 9 8 7 36 36 H 1.09008 * 109.37664 * 102.00974 * 10 7 5 37 37 H 1.08997 * 109.37097 * 221.77126 * 10 7 5 38 38 H 1.08999 * 109.61024 * 290.52873 * 11 10 7 39 39 H 1.09003 * 109.58499 * 170.07186 * 11 10 7 40 40 H 1.09005 * 109.46993 * 44.37411 * 13 12 3 41 41 H 1.08995 * 109.47261 * 284.37157 * 13 12 3 42 42 H 1.09000 * 109.47008 * 179.97438 * 16 14 13 43 43 H 1.08991 * 109.47532 * 299.99631 * 16 14 13 44 44 H 1.08998 * 109.47356 * 60.00200 * 16 14 13 45 45 H 1.08996 * 109.46900 * 305.00284 * 17 14 13 46 46 H 1.08994 * 109.47055 * 65.00212 * 17 14 13 47 47 H 0.97001 * 119.99401 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1293 1.4411 -0.0388 5 6 1.5886 2.1311 1.2570 6 8 1.6576 1.5277 2.3068 7 7 1.1139 3.3810 1.2665 8 6 0.7338 3.9756 2.5504 9 6 1.9420 4.6905 3.1588 10 6 0.9567 4.1796 0.0543 11 6 1.7991 3.5867 -1.0769 12 7 1.5111 2.1468 -1.1757 13 6 2.0592 1.5842 -2.4171 14 6 1.2185 2.0554 -3.6054 15 1 1.1691 3.1443 -3.6063 16 6 -0.1948 1.4808 -3.4900 17 6 1.8605 1.5728 -4.9076 18 6 1.1031 2.1389 -6.0810 19 1 0.2489 2.7785 -5.9146 20 6 1.4999 1.8394 -7.3671 21 7 2.5397 1.0601 -7.5697 22 14 0.5606 2.5405 -8.8215 23 1 0.6027 4.0240 -8.7694 24 1 1.1838 2.0722 -10.0854 25 1 -0.8512 2.0832 -8.7660 26 1 -0.3633 0.5884 0.8425 27 1 -0.3633 0.4355 -0.9308 28 1 -0.3634 -1.0238 0.0883 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 -0.0721 4.6927 2.3944 32 1 0.3964 3.1915 3.2282 33 1 2.7479 3.9735 3.3148 34 1 2.2794 5.4746 2.4810 35 1 1.6594 5.1325 4.1142 36 1 -0.0926 4.1857 -0.2413 37 1 1.2834 5.2010 0.2493 38 1 2.8573 3.7339 -0.8608 39 1 1.5444 4.0758 -2.0172 40 1 2.0355 0.4957 -2.3642 41 1 3.0885 1.9195 -2.5444 42 1 -0.7938 1.8169 -4.3363 43 1 -0.1454 0.3920 -3.4890 44 1 -0.6522 1.8246 -2.5623 45 1 2.8967 1.9085 -4.9479 46 1 1.8296 0.4840 -4.9462 47 1 2.8186 0.8491 -8.4744 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602626585.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:50 Heat of formation + Delta-G solvation = -45.972488 kcal Electronic energy + Delta-G solvation = -23814.311106 eV Core-core repulsion = 20610.483474 eV Total energy + Delta-G solvation = -3203.827632 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.81941 -37.82537 -36.29581 -34.80401 -32.82621 -32.22706 -30.83982 -28.95196 -27.40844 -26.45004 -24.98980 -24.04765 -22.93897 -22.16041 -21.00942 -19.03087 -18.41600 -17.11208 -16.77103 -16.22844 -15.66519 -15.21378 -14.73351 -14.54507 -14.26166 -14.20426 -13.85470 -13.69362 -13.14901 -12.84240 -12.70384 -12.50949 -12.31540 -12.14765 -12.09250 -11.64699 -11.52848 -11.42506 -11.17350 -11.13366 -10.94200 -10.87991 -10.76682 -10.62303 -10.32428 -10.25083 -9.73901 -9.61001 -9.13924 -8.99111 -8.80053 -8.34385 -8.24077 -5.99425 -4.00681 2.61851 2.89235 3.32830 3.37763 3.39717 3.85265 4.41861 4.46577 4.70629 4.83861 4.94718 5.00835 5.11524 5.17458 5.19179 5.24005 5.36489 5.45139 5.51938 5.56251 5.70346 5.73741 5.74595 5.81529 5.85705 5.96562 5.98338 6.08031 6.17456 6.29720 6.32589 6.33541 6.46841 6.58215 6.67235 6.91811 7.01041 7.13088 7.21915 7.28771 7.37052 7.66669 7.82366 8.00459 8.14367 8.44068 9.05530 9.62854 11.12022 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027899 B = 0.003837 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.390928 B = 7295.538632 C = 7745.507206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 C 0.068 3.932 4 H 0.069 0.931 5 C 0.532 3.468 6 O -0.552 6.552 7 N -0.603 5.603 8 C 0.105 3.895 9 C -0.165 4.165 10 C 0.120 3.880 11 C 0.032 3.968 12 N -0.519 5.519 13 C 0.055 3.945 14 C -0.076 4.076 15 H 0.055 0.945 16 C -0.123 4.123 17 C 0.028 3.972 18 C -0.513 4.513 19 H 0.056 0.944 20 C 0.056 3.944 21 N -0.897 5.897 22 Si 0.889 3.111 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.045 0.955 27 H 0.073 0.927 28 H 0.047 0.953 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.040 0.960 39 H 0.105 0.895 40 H 0.077 0.923 41 H 0.033 0.967 42 H 0.053 0.947 43 H 0.039 0.961 44 H 0.043 0.957 45 H 0.012 0.988 46 H 0.016 0.984 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.364 5.570 17.855 18.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.141 4.141 3 C -0.043 4.043 4 H 0.087 0.913 5 C 0.320 3.680 6 O -0.429 6.429 7 N -0.336 5.336 8 C -0.018 4.018 9 C -0.224 4.224 10 C -0.003 4.003 11 C -0.097 4.097 12 N -0.245 5.245 13 C -0.072 4.072 14 C -0.095 4.095 15 H 0.074 0.926 16 C -0.180 4.180 17 C -0.010 4.010 18 C -0.551 4.551 19 H 0.074 0.926 20 C -0.145 4.145 21 N -0.536 5.536 22 Si 0.717 3.283 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.203 1.203 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.059 0.941 39 H 0.123 0.877 40 H 0.095 0.905 41 H 0.052 0.948 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.030 0.970 46 H 0.034 0.966 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.735 5.103 18.247 19.144 hybrid contribution 0.544 0.611 -1.010 1.300 sum -2.191 5.714 17.238 18.292 Atomic orbital electron populations 1.21670 0.94754 1.00776 1.02778 1.21438 0.97605 0.92510 1.02560 1.21786 0.98318 0.95838 0.88402 0.91346 1.20080 0.76418 0.80833 0.90663 1.90671 1.55477 1.63997 1.32776 1.47516 1.63954 1.14166 1.07988 1.21433 0.96961 0.97988 0.85424 1.22098 0.99028 1.00552 1.00695 1.21558 1.01202 0.94130 0.83438 1.22551 0.97584 0.89988 0.99555 1.62596 1.58430 1.01770 1.01708 1.22479 0.96522 0.99986 0.88219 1.21185 0.95098 0.99259 0.93990 0.92641 1.21607 0.96734 0.99686 0.99978 1.19117 0.95447 0.96545 0.89890 1.21180 1.13533 1.29655 0.90777 0.92626 1.25013 0.95145 0.95314 0.98999 1.69951 1.25693 1.36769 1.21222 0.86704 0.80171 0.79388 0.82002 1.20336 1.21404 1.20260 0.93624 0.90782 0.93411 0.90702 0.90888 0.90660 0.89716 0.92369 0.92657 0.91682 0.90723 0.90667 0.94150 0.87715 0.90499 0.94827 0.92792 0.94167 0.93842 0.96989 0.96575 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.52 37.16 0.35 -1.55 16 2 C -0.10 -1.36 5.25 -26.73 -0.14 -1.50 16 3 C 0.07 0.92 2.19 -69.07 -0.15 0.77 16 4 H 0.07 0.92 8.12 -51.93 -0.42 0.50 16 5 C 0.53 7.47 5.91 -11.67 -0.07 7.40 16 6 O -0.55 -9.15 15.47 5.55 0.09 -9.06 16 7 N -0.60 -7.01 2.83 -174.57 -0.49 -7.50 16 8 C 0.10 1.02 6.01 -4.04 -0.02 1.00 16 9 C -0.17 -1.44 10.23 37.16 0.38 -1.06 16 10 C 0.12 1.19 6.57 -4.31 -0.03 1.16 16 11 C 0.03 0.37 5.44 -3.67 -0.02 0.35 16 12 N -0.52 -7.01 3.12 -228.05 -0.71 -7.72 16 13 C 0.05 0.86 4.22 -3.82 -0.02 0.85 16 14 C -0.08 -1.44 2.36 -90.62 -0.21 -1.65 16 15 H 0.06 1.04 6.48 -51.93 -0.34 0.71 16 16 C -0.12 -2.22 8.55 37.16 0.32 -1.90 16 17 C 0.03 0.67 4.45 -27.88 -0.12 0.55 16 18 C -0.51 -13.88 8.41 -34.44 -0.29 -14.17 16 19 H 0.06 1.46 7.06 -52.49 -0.37 1.09 16 20 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 21 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 22 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H 0.04 0.65 7.11 -51.93 -0.37 0.28 16 27 H 0.07 1.05 6.55 -51.93 -0.34 0.71 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.97 6.36 -51.93 -0.33 0.64 16 30 H 0.07 0.97 7.74 -51.93 -0.40 0.57 16 31 H 0.07 0.57 8.03 -51.93 -0.42 0.15 16 32 H 0.08 0.95 7.21 -51.93 -0.37 0.58 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.74 8.14 -51.92 -0.42 0.31 16 37 H 0.08 0.58 8.13 -51.93 -0.42 0.16 16 38 H 0.04 0.47 8.08 -51.93 -0.42 0.05 16 39 H 0.10 1.26 6.36 -51.93 -0.33 0.93 16 40 H 0.08 1.23 5.98 -51.93 -0.31 0.92 16 41 H 0.03 0.54 8.04 -51.93 -0.42 0.13 16 42 H 0.05 1.06 6.95 -51.93 -0.36 0.70 16 43 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.04 0.70 6.96 -51.93 -0.36 0.34 16 45 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 358.71 15.07 5.41 5.41 Total: -1.00 -30.42 358.71 -8.62 -39.04 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -8.50 Total: -2.39 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -0.12 Total: -8.29 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: -0.47 Total: -40.95 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.42 -8.62 -39.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602626585.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.937 kcal (2) G-P(sol) polarization free energy of solvation -30.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds