Wall clock time and date at job start Tue Mar 31 2020 05:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47454 * 2 1 4 4 H 1.09003 * 109.38850 * 177.48371 * 3 2 1 5 5 C 1.50255 * 109.38598 * 297.27974 * 3 2 1 6 6 O 1.21273 * 118.62555 * 317.35172 * 5 3 2 7 7 N 1.33578 * 122.85500 * 137.46486 * 5 3 2 8 8 C 1.46494 * 118.57571 * 178.21513 * 7 5 3 9 9 C 1.52992 * 109.47481 * 269.90896 * 8 7 5 10 10 C 1.46004 * 122.88313 * 358.11737 * 7 5 3 11 11 C 1.52979 * 110.04714 * 18.26262 * 10 7 5 12 12 N 1.46902 * 109.38319 * 57.69435 * 3 2 1 13 13 C 1.46899 * 111.00171 * 66.17582 * 12 3 2 14 14 C 1.53001 * 109.47169 * 208.58960 * 13 12 3 15 15 H 1.08998 * 109.46766 * 54.01491 * 14 13 12 16 16 C 1.52997 * 109.47156 * 294.01417 * 14 13 12 17 17 C 1.53000 * 109.47164 * 174.01548 * 14 13 12 18 18 C 1.50696 * 109.47420 * 185.00230 * 17 14 13 19 19 H 1.08003 * 120.00028 * 359.97438 * 18 17 14 20 20 C 1.37876 * 120.00390 * 180.02562 * 18 17 14 21 21 N 1.31516 * 119.99639 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00235 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47164 * 89.99927 * 22 20 18 24 24 H 1.48506 * 109.47168 * 209.99981 * 22 20 18 25 25 H 1.48506 * 109.47177 * 329.99655 * 22 20 18 26 26 H 1.09001 * 109.47092 * 305.20875 * 1 2 3 27 27 H 1.08996 * 109.46929 * 65.20973 * 1 2 3 28 28 H 1.09001 * 109.47370 * 185.20751 * 1 2 3 29 29 H 1.09006 * 109.47289 * 240.00173 * 2 1 3 30 30 H 1.08999 * 109.47353 * 120.00472 * 2 1 3 31 31 H 1.09003 * 109.47589 * 29.91159 * 8 7 5 32 32 H 1.09001 * 109.47146 * 149.90701 * 8 7 5 33 33 H 1.09000 * 109.47582 * 180.02562 * 9 8 7 34 34 H 1.09005 * 109.47036 * 300.00142 * 9 8 7 35 35 H 1.08994 * 109.47386 * 59.99959 * 9 8 7 36 36 H 1.09000 * 109.37973 * 258.08228 * 10 7 5 37 37 H 1.09005 * 109.36927 * 138.43126 * 10 7 5 38 38 H 1.08998 * 109.59656 * 189.93104 * 11 10 7 39 39 H 1.08999 * 109.72359 * 69.54988 * 11 10 7 40 40 H 1.08998 * 109.47434 * 328.59160 * 13 12 3 41 41 H 1.09000 * 109.46559 * 88.59562 * 13 12 3 42 42 H 1.08993 * 109.47582 * 312.73271 * 16 14 13 43 43 H 1.09007 * 109.47347 * 72.73810 * 16 14 13 44 44 H 1.09002 * 109.47168 * 192.72673 * 16 14 13 45 45 H 1.08999 * 109.46881 * 305.00558 * 17 14 13 46 46 H 1.09005 * 109.47040 * 64.99924 * 17 14 13 47 47 H 0.96998 * 119.99855 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1291 1.4411 0.0451 5 6 1.5939 2.1292 -1.2597 6 8 1.6671 1.5245 -2.3084 7 7 1.1216 3.3786 -1.2757 8 6 0.7501 3.9709 -2.5630 9 6 1.9622 4.6844 -3.1650 10 6 0.9575 4.1795 -0.0660 11 6 1.7929 3.5889 1.0713 12 7 1.5044 2.1490 1.1713 13 6 2.0452 1.5888 2.4169 14 6 1.0328 1.7866 3.5469 15 1 0.0703 1.3707 3.2492 16 6 0.8756 3.2810 3.8350 17 6 1.5288 1.0738 4.8066 18 6 0.4770 1.1639 5.8819 19 1 -0.4522 1.6786 5.6866 20 6 0.7012 0.5904 7.1155 21 7 1.8330 -0.0359 7.3535 22 14 -0.6029 0.7015 8.4482 23 1 -1.5144 -0.4665 8.3474 24 1 0.0509 0.7056 9.7816 25 1 -1.3821 1.9538 8.2752 26 1 -0.3633 0.5925 0.8397 27 1 -0.3633 0.4309 -0.9329 28 1 -0.3634 -1.0234 0.0933 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 0.4166 3.1858 -3.2416 32 1 -0.0566 4.6886 -2.4134 33 1 1.6857 5.1255 -4.1226 34 1 2.2956 5.4696 -2.4865 35 1 2.7689 3.9668 -3.3146 36 1 -0.0934 4.1866 0.2233 37 1 1.2839 5.2010 -0.2616 38 1 1.5328 4.0798 2.0091 39 1 2.8528 3.7357 0.8638 40 1 2.2372 0.5242 2.2833 41 1 2.9758 2.0970 2.6697 42 1 1.8603 3.7421 3.9104 43 1 0.3157 3.7501 3.0259 44 1 0.3386 3.4155 4.7739 45 1 1.7257 0.0265 4.5777 46 1 2.4463 1.5482 5.1550 47 1 1.9906 -0.4397 8.2212 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602626586.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:54 Heat of formation + Delta-G solvation = -38.972541 kcal Electronic energy + Delta-G solvation = -23826.646987 eV Core-core repulsion = 20623.122896 eV Total energy + Delta-G solvation = -3203.524091 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.83069 -37.89270 -36.27869 -34.83271 -32.84389 -32.17703 -30.79850 -29.05234 -27.36757 -26.68060 -25.11075 -23.93539 -22.72166 -22.20649 -20.98526 -19.10388 -18.33565 -17.28816 -16.74542 -16.22898 -15.68686 -15.16348 -14.84328 -14.49513 -14.32343 -14.23514 -13.87434 -13.56716 -13.11932 -12.76042 -12.61070 -12.45770 -12.29656 -12.23406 -12.20174 -11.71971 -11.62308 -11.44345 -11.18398 -11.15768 -11.02230 -10.84088 -10.64938 -10.58308 -10.24997 -10.10852 -9.74072 -9.68000 -9.10540 -9.00004 -8.79358 -8.34069 -8.22690 -5.98919 -3.99949 2.63487 2.90168 3.32337 3.38960 3.41482 3.86363 4.43315 4.47350 4.70958 4.84866 4.94928 5.01746 5.12339 5.17785 5.19073 5.24243 5.37067 5.46578 5.54203 5.56793 5.67643 5.73960 5.75866 5.79325 5.87781 5.96254 5.99425 6.05280 6.16312 6.24258 6.34535 6.35045 6.41706 6.50700 6.64074 6.86130 7.06886 7.11696 7.13293 7.29324 7.38078 7.68727 7.84066 8.01305 8.15778 8.44948 9.06508 9.63586 11.12548 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029430 B = 0.003829 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.177791 B = 7310.626454 C = 7728.251286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 C 0.068 3.932 4 H 0.069 0.931 5 C 0.532 3.468 6 O -0.552 6.552 7 N -0.603 5.603 8 C 0.104 3.896 9 C -0.165 4.165 10 C 0.119 3.881 11 C 0.016 3.984 12 N -0.520 5.520 13 C 0.054 3.946 14 C -0.075 4.075 15 H 0.066 0.934 16 C -0.139 4.139 17 C 0.027 3.973 18 C -0.512 4.512 19 H 0.056 0.944 20 C 0.056 3.944 21 N -0.897 5.897 22 Si 0.889 3.111 23 H -0.281 1.281 24 H -0.288 1.288 25 H -0.274 1.274 26 H 0.074 0.926 27 H 0.044 0.956 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.118 0.882 39 H 0.038 0.962 40 H 0.074 0.926 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.041 0.959 44 H 0.065 0.935 45 H 0.014 0.986 46 H 0.014 0.986 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.153 9.085 -17.008 19.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.142 4.142 3 C -0.044 4.044 4 H 0.086 0.914 5 C 0.320 3.680 6 O -0.430 6.430 7 N -0.336 5.336 8 C -0.018 4.018 9 C -0.223 4.223 10 C -0.004 4.004 11 C -0.112 4.112 12 N -0.245 5.245 13 C -0.072 4.072 14 C -0.094 4.094 15 H 0.084 0.916 16 C -0.196 4.196 17 C -0.010 4.010 18 C -0.550 4.550 19 H 0.075 0.925 20 C -0.145 4.145 21 N -0.536 5.536 22 Si 0.717 3.283 23 H -0.207 1.207 24 H -0.214 1.214 25 H -0.199 1.199 26 H 0.093 0.907 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.136 0.864 39 H 0.056 0.944 40 H 0.092 0.908 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.033 0.967 46 H 0.032 0.968 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.530 8.612 -17.407 19.429 hybrid contribution 0.330 0.241 0.902 0.991 sum -0.200 8.853 -16.505 18.731 Atomic orbital electron populations 1.21652 0.94729 1.01425 1.02254 1.21455 0.97684 0.92419 1.02619 1.21796 0.98217 0.95936 0.88402 0.91375 1.20060 0.76417 0.80826 0.90709 1.90666 1.55403 1.63962 1.32932 1.47482 1.64087 1.14108 1.07896 1.21432 0.96982 0.98034 0.85382 1.22094 0.99013 1.00531 1.00706 1.21549 1.01213 0.94075 0.83551 1.22983 0.97535 0.90252 1.00407 1.62593 1.58484 1.01727 1.01733 1.22512 0.96901 0.99527 0.88288 1.21157 0.97875 0.95904 0.94464 0.91583 1.21951 0.99997 0.96531 1.01125 1.19115 0.96407 0.95066 0.90417 1.21218 1.02311 1.34510 0.96995 0.92533 1.25014 0.95393 0.95504 0.98605 1.69962 1.23912 1.36716 1.23045 0.86644 0.81852 0.78436 0.81362 1.20735 1.21371 1.19913 0.90713 0.93730 0.93191 0.90887 0.90572 0.89685 0.90677 0.91675 0.92700 0.92365 0.90784 0.90750 0.86393 0.94400 0.90762 0.94489 0.94363 0.94005 0.91561 0.96744 0.96813 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.50 37.16 0.35 -1.67 16 2 C -0.10 -1.43 5.27 -26.73 -0.14 -1.58 16 3 C 0.07 0.93 2.17 -69.08 -0.15 0.78 16 4 H 0.07 0.92 8.12 -51.93 -0.42 0.50 16 5 C 0.53 7.59 6.09 -11.73 -0.07 7.52 16 6 O -0.55 -9.29 15.44 5.56 0.09 -9.21 16 7 N -0.60 -7.08 2.82 -174.64 -0.49 -7.57 16 8 C 0.10 1.03 6.01 -4.05 -0.02 1.00 16 9 C -0.17 -1.43 10.23 37.15 0.38 -1.05 16 10 C 0.12 1.18 6.57 -4.32 -0.03 1.16 16 11 C 0.02 0.19 4.98 -3.67 -0.02 0.17 16 12 N -0.52 -7.11 3.36 -228.06 -0.77 -7.88 16 13 C 0.05 0.86 4.51 -3.82 -0.02 0.85 16 14 C -0.07 -1.42 2.54 -90.62 -0.23 -1.65 16 15 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 16 C -0.14 -2.37 7.56 37.16 0.28 -2.08 16 17 C 0.03 0.67 4.45 -27.89 -0.12 0.55 16 18 C -0.51 -13.85 8.22 -34.44 -0.28 -14.13 16 19 H 0.06 1.49 7.15 -52.48 -0.38 1.12 16 20 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 21 N -0.90 -26.46 13.29 55.43 0.74 -25.73 16 22 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 26 H 0.07 1.14 7.37 -51.93 -0.38 0.76 16 27 H 0.04 0.65 7.44 -51.93 -0.39 0.26 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.07 1.01 7.73 -51.93 -0.40 0.61 16 30 H 0.08 1.05 6.32 -51.93 -0.33 0.72 16 31 H 0.08 0.97 7.20 -51.93 -0.37 0.59 16 32 H 0.07 0.58 8.03 -51.93 -0.42 0.16 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 38 H 0.12 1.36 4.04 -51.93 -0.21 1.15 16 39 H 0.04 0.43 8.08 -51.93 -0.42 0.01 16 40 H 0.07 1.21 5.84 -51.93 -0.30 0.91 16 41 H 0.04 0.58 7.78 -51.93 -0.40 0.18 16 42 H 0.04 0.61 7.61 -51.93 -0.39 0.21 16 43 H 0.04 0.60 6.34 -51.92 -0.33 0.27 16 44 H 0.07 1.28 6.69 -51.93 -0.35 0.93 16 45 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 356.63 15.07 5.37 5.37 Total: -1.00 -30.47 356.63 -8.69 -39.16 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -8.43 Total: -1.76 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -0.17 Total: -8.68 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: -0.52 Total: -41.18 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.47 -8.69 -39.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602626586.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.186 kcal (2) G-P(sol) polarization free energy of solvation -30.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds